EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000001560 (Gene tree)
Gene ID: 105007398
Gene Symbol: -
Alias: zgc:109966
Full Name: poly(rC)-binding protein 3
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 32974 bases
Position: chrLG16:5045823-5078796
Accession: 105007398
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000009435	KH_1	PF00013.29	8.1e-55	1	3
ENSELUP00000009435	KH_1	PF00013.29	8.1e-55	2	3
ENSELUP00000009435	KH_1	PF00013.29	8.1e-55	3	3
ENSELUP00000009424	KH_1	PF00013.29	1.2e-50	1	3
ENSELUP00000009424	KH_1	PF00013.29	1.2e-50	2	3
ENSELUP00000009424	KH_1	PF00013.29	1.2e-50	3	3
ENSELUP00000009435	KH_2	PF07650.17	2.2e-14	1	1
ENSELUP00000009424	KH_2	PF07650.17	1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000003883	-	1056	-	ENSELUP00000009424	351 (aa)	-	-
ENSELUT00000003842	-	5481	XM_013131193	ENSELUP00000009435	361 (aa)	XP_012986647	-

Gene Model

Click here to download ENSELUG00000001560's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000001560's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000001560	-	97	58.074	ENSELUG00000001870	-	84	52.239
ENSELUG00000001560	-	100	83.014	ENSELUG00000003521	pcbp3	100	90.935
ENSELUG00000001560	-	93	34.524	ENSELUG00000013808	fubp3	66	39.062
ENSELUG00000001560	-	73	45.882	ENSELUG00000004017	hnrpkl	61	44.444
ENSELUG00000001560	-	70	37.662	ENSELUG00000008445	-	61	37.209
ENSELUG00000001560	-	83	80.795	ENSELUG00000010754	PCBP2	96	78.165
ENSELUG00000001560	-	97	58.523	ENSELUG00000018204	pcbp4	79	58.503
ENSELUG00000001560	-	80	38.462	ENSELUG00000007990	fubp1	51	38.462
ENSELUG00000001560	-	85	79.233	ENSELUG00000014427	pcbp2	96	79.233
ENSELUG00000001560	-	72	35.915	ENSELUG00000010676	igf2bp2a	65	35.915
ENSELUG00000001560	-	73	30.579	ENSELUG00000016310	khsrp	56	40.625
ENSELUG00000001560	-	69	41.772	ENSELUG00000017375	nova1	60	39.706
ENSELUG00000001560	-	92	33.099	ENSELUG00000005947	igf2bp3	69	33.099
ENSELUG00000001560	-	79	35.938	ENSELUG00000009949	-	63	35.938
ENSELUG00000001560	-	94	65.588	ENSELUG00000019784	zgc:110045	71	73.633
ENSELUG00000001560	-	69	50.000	ENSELUG00000002820	hnrnpk	56	50.000
ENSELUG00000001560	-	82	32.117	ENSELUG00000014974	igf2bp1	61	32.117

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000001560	-	98	85.057	ENSAPOG00000020003	pcbp3	86	94.839	Acanthochromis_polyacanthus
ENSELUG00000001560	-	91	98.777	ENSAPOG00000016582	-	100	98.777	Acanthochromis_polyacanthus
ENSELUG00000001560	-	97	83.662	ENSAMEG00000001697	-	95	87.240	Ailuropoda_melanoleuca
ENSELUG00000001560	-	99	85.552	ENSACIG00000002739	-	97	93.396	Amphilophus_citrinellus
ENSELUG00000001560	-	96	86.842	ENSACIG00000010933	pcbp3	100	88.286	Amphilophus_citrinellus
ENSELUG00000001560	-	86	97.419	ENSAOCG00000008592	-	98	97.419	Amphiprion_ocellaris
ENSELUG00000001560	-	90	86.349	ENSAOCG00000007806	-	97	94.346	Amphiprion_ocellaris
ENSELUG00000001560	-	99	84.746	ENSAPEG00000005209	-	97	96.141	Amphiprion_percula
ENSELUG00000001560	-	100	82.920	ENSAPEG00000008011	pcbp3	100	90.625	Amphiprion_percula
ENSELUG00000001560	-	99	85.755	ENSATEG00000009833	-	97	95.820	Anabas_testudineus
ENSELUG00000001560	-	96	87.647	ENSATEG00000015787	-	100	88.288	Anabas_testudineus
ENSELUG00000001560	-	97	83.095	ENSAPLG00000002975	-	95	93.060	Anas_platyrhynchos
ENSELUG00000001560	-	94	73.569	ENSAPLG00000008951	-	82	75.683	Anas_platyrhynchos
ENSELUG00000001560	-	97	78.674	ENSACAG00000009819	-	94	84.356	Anolis_carolinensis
ENSELUG00000001560	-	97	83.799	ENSACAG00000004607	-	98	83.799	Anolis_carolinensis
ENSELUG00000001560	-	82	96.491	ENSANAG00000030702	-	96	96.491	Aotus_nancymaae
ENSELUG00000001560	-	91	98.165	ENSACLG00000003801	-	100	98.165	Astatotilapia_calliptera
ENSELUG00000001560	-	96	85.057	ENSACLG00000011835	pcbp3	100	89.773	Astatotilapia_calliptera
ENSELUG00000001560	-	94	63.533	ENSAMXG00000001760	zgc:110045	72	67.477	Astyanax_mexicanus
ENSELUG00000001560	-	96	84.524	ENSAMXG00000013588	-	100	92.258	Astyanax_mexicanus
ENSELUG00000001560	-	100	84.298	ENSAMXG00000003440	pcbp3	100	92.286	Astyanax_mexicanus
ENSELUG00000001560	-	86	92.400	ENSCAFG00020019472	-	88	92.400	Canis_lupus_dingo
ENSELUG00000001560	-	91	92.145	ENSCSAG00000007440	-	94	92.145	Chlorocebus_sabaeus
ENSELUG00000001560	-	94	87.113	ENSCPBG00000000733	-	75	81.232	Chrysemys_picta_bellii
ENSELUG00000001560	-	88	93.417	ENSCPBG00000012151	-	95	93.417	Chrysemys_picta_bellii
ENSELUG00000001560	-	96	84.866	ENSCSEG00000000822	pcbp3	99	93.226	Cynoglossus_semilaevis
ENSELUG00000001560	-	99	73.151	ENSCSEG00000016984	-	94	81.013	Cynoglossus_semilaevis
ENSELUG00000001560	-	100	83.149	ENSCVAG00000014482	pcbp3	100	90.341	Cyprinodon_variegatus
ENSELUG00000001560	-	91	98.165	ENSCVAG00000005262	-	100	98.165	Cyprinodon_variegatus
ENSELUG00000001560	-	99	86.072	ENSDARG00000054378	pcbp3	100	92.571	Danio_rerio
ENSELUG00000001560	-	97	72.701	ENSETEG00000015988	-	95	82.838	Echinops_telfairi
ENSELUG00000001560	-	92	59.524	ENSEBUG00000005495	pcbp3	74	70.445	Eptatretus_burgeri
ENSELUG00000001560	-	97	70.085	ENSEBUG00000007485	-	92	82.648	Eptatretus_burgeri
ENSELUG00000001560	-	82	73.606	ENSEBUG00000016192	pcbp3	99	73.606	Eptatretus_burgeri
ENSELUG00000001560	-	84	97.030	ENSFALG00000003949	-	95	97.030	Ficedula_albicollis
ENSELUG00000001560	-	94	73.352	ENSFALG00000004411	-	77	75.683	Ficedula_albicollis
ENSELUG00000001560	-	99	84.746	ENSFHEG00000006539	-	97	95.498	Fundulus_heteroclitus
ENSELUG00000001560	-	96	86.607	ENSFHEG00000016615	pcbp3	97	92.744	Fundulus_heteroclitus
ENSELUG00000001560	-	95	67.806	ENSGMOG00000008611	-	100	70.393	Gadus_morhua
ENSELUG00000001560	-	99	72.900	ENSGMOG00000011992	pcbp3	96	81.381	Gadus_morhua
ENSELUG00000001560	-	97	85.070	ENSGALG00000004394	-	98	90.217	Gallus_gallus
ENSELUG00000001560	-	94	81.081	ENSGALG00000013155	-	97	81.790	Gallus_gallus
ENSELUG00000001560	-	91	98.165	ENSGAFG00000010274	-	100	98.165	Gambusia_affinis
ENSELUG00000001560	-	96	84.928	ENSGAFG00000011430	pcbp3	96	86.486	Gambusia_affinis
ENSELUG00000001560	-	97	80.000	ENSGACG00000014955	-	97	81.303	Gasterosteus_aculeatus
ENSELUG00000001560	-	99	82.192	ENSGACG00000002266	-	97	91.239	Gasterosteus_aculeatus
ENSELUG00000001560	-	81	89.513	ENSGAGG00000000271	-	100	89.513	Gopherus_agassizii
ENSELUG00000001560	-	70	89.947	ENSGAGG00000006956	-	78	89.947	Gopherus_agassizii
ENSELUG00000001560	-	96	85.303	ENSHBUG00000010697	pcbp3	98	94.194	Haplochromis_burtoni
ENSELUG00000001560	-	91	98.165	ENSHBUG00000021782	-	100	98.165	Haplochromis_burtoni
ENSELUG00000001560	-	99	80.282	ENSHCOG00000006067	-	97	92.926	Hippocampus_comes
ENSELUG00000001560	-	100	83.149	ENSHCOG00000017868	pcbp3	100	90.598	Hippocampus_comes
ENSELUG00000001560	-	99	85.920	ENSIPUG00000006238	pcbp3	97	95.177	Ictalurus_punctatus
ENSELUG00000001560	-	100	82.920	ENSKMAG00000003046	pcbp3	100	90.625	Kryptolebias_marmoratus
ENSELUG00000001560	-	91	97.248	ENSKMAG00000018530	-	100	97.248	Kryptolebias_marmoratus
ENSELUG00000001560	-	99	82.768	ENSLBEG00000006201	pcbp3	96	93.610	Labrus_bergylta
ENSELUG00000001560	-	91	82.530	ENSLBEG00000006542	-	100	82.530	Labrus_bergylta
ENSELUG00000001560	-	94	79.178	ENSLACG00000010386	pcbp3	76	81.215	Latimeria_chalumnae
ENSELUG00000001560	-	94	73.352	ENSLACG00000010804	zgc:110045	76	75.758	Latimeria_chalumnae
ENSELUG00000001560	-	94	78.698	ENSLOCG00000005058	zgc:110045	79	83.436	Lepisosteus_oculatus
ENSELUG00000001560	-	97	85.185	ENSLOCG00000009369	pcbp3	95	91.641	Lepisosteus_oculatus
ENSELUG00000001560	-	98	84.884	ENSMAMG00000022336	pcbp3	93	94.516	Mastacembelus_armatus
ENSELUG00000001560	-	99	84.615	ENSMAMG00000011620	-	97	94.534	Mastacembelus_armatus
ENSELUG00000001560	-	96	85.345	ENSMZEG00005008993	pcbp3	100	88.000	Maylandia_zebra
ENSELUG00000001560	-	100	79.494	ENSMZEG00005014882	-	100	89.053	Maylandia_zebra
ENSELUG00000001560	-	93	79.592	ENSMGAG00000001883	-	96	81.503	Meleagris_gallopavo
ENSELUG00000001560	-	94	73.569	ENSMGAG00000006794	-	77	75.683	Meleagris_gallopavo
ENSELUG00000001560	-	86	93.590	ENSMMOG00000000730	pcbp3	88	93.590	Mola_mola
ENSELUG00000001560	-	99	85.920	ENSMMOG00000005216	-	97	95.177	Mola_mola
ENSELUG00000001560	-	75	79.909	ENSMODG00000027884	-	94	79.909	Monodelphis_domestica
ENSELUG00000001560	-	97	86.880	ENSMALG00000000691	pcbp3	100	88.319	Monopterus_albus
ENSELUG00000001560	-	97	79.603	ENSMPUG00000001779	-	87	84.520	Mustela_putorius_furo
ENSELUG00000001560	-	96	87.611	ENSNBRG00000016409	-	100	88.000	Neolamprologus_brichardi
ENSELUG00000001560	-	97	86.207	ENSNBRG00000016714	-	100	89.053	Neolamprologus_brichardi
ENSELUG00000001560	-	93	85.503	ENSOPRG00000003431	-	98	85.503	Ochotona_princeps
ENSELUG00000001560	-	97	83.333	ENSONIG00000012122	-	98	84.986	Oreochromis_niloticus
ENSELUG00000001560	-	99	85.440	ENSONIG00000004611	-	97	97.749	Oreochromis_niloticus
ENSELUG00000001560	-	84	96.700	ENSOCUG00000002696	-	86	96.700	Oryctolagus_cuniculus
ENSELUG00000001560	-	86	97.419	ENSORLG00000000059	pcbp3	100	97.419	Oryzias_latipes
ENSELUG00000001560	-	90	97.546	ENSORLG00000022739	-	99	97.546	Oryzias_latipes
ENSELUG00000001560	-	90	97.239	ENSORLG00020006124	-	99	97.239	Oryzias_latipes_hni
ENSELUG00000001560	-	86	97.419	ENSORLG00020012671	pcbp3	97	97.419	Oryzias_latipes_hni
ENSELUG00000001560	-	90	97.546	ENSORLG00015008051	-	99	97.546	Oryzias_latipes_hsok
ENSELUG00000001560	-	86	97.419	ENSORLG00015000429	pcbp3	97	97.419	Oryzias_latipes_hsok
ENSELUG00000001560	-	99	85.632	ENSOMEG00000020162	-	97	97.428	Oryzias_melastigma
ENSELUG00000001560	-	82	96.441	ENSOMEG00000020811	pcbp3	97	96.441	Oryzias_melastigma
ENSELUG00000001560	-	97	82.022	ENSOGAG00000008044	-	98	82.022	Otolemur_garnettii
ENSELUG00000001560	-	70	86.559	ENSPKIG00000020913	-	83	86.559	Paramormyrops_kingsleyae
ENSELUG00000001560	-	91	97.554	ENSPKIG00000019329	pcbp3	100	97.554	Paramormyrops_kingsleyae
ENSELUG00000001560	-	85	77.395	ENSPSIG00000008350	-	72	77.395	Pelodiscus_sinensis
ENSELUG00000001560	-	97	75.071	ENSPSIG00000014970	-	95	84.062	Pelodiscus_sinensis
ENSELUG00000001560	-	97	84.900	ENSPMGG00000022383	pcbp3	100	90.571	Periophthalmus_magnuspinnatus
ENSELUG00000001560	-	69	89.840	ENSPMAG00000004637	-	97	89.840	Petromyzon_marinus
ENSELUG00000001560	-	98	63.944	ENSPMAG00000004551	pcbp3	91	73.438	Petromyzon_marinus
ENSELUG00000001560	-	97	84.615	ENSPCIG00000028092	-	96	92.130	Phascolarctos_cinereus
ENSELUG00000001560	-	96	86.416	ENSPLAG00000011449	pcbp3	100	76.250	Poecilia_latipinna
ENSELUG00000001560	-	98	87.464	ENSPLAG00000004074	-	89	91.562	Poecilia_latipinna
ENSELUG00000001560	-	98	88.081	ENSPMEG00000006653	-	100	88.824	Poecilia_mexicana
ENSELUG00000001560	-	96	85.630	ENSPMEG00000021239	pcbp3	100	89.831	Poecilia_mexicana
ENSELUG00000001560	-	96	84.366	ENSPREG00000015736	pcbp3	99	92.628	Poecilia_reticulata
ENSELUG00000001560	-	99	85.920	ENSPREG00000020585	-	97	95.177	Poecilia_reticulata
ENSELUG00000001560	-	86	94.516	ENSPNYG00000012326	pcbp3	95	94.516	Pundamilia_nyererei
ENSELUG00000001560	-	99	85.920	ENSPNYG00000013205	-	97	95.177	Pundamilia_nyererei
ENSELUG00000001560	-	96	84.570	ENSPNAG00000008541	-	98	92.857	Pygocentrus_nattereri
ENSELUG00000001560	-	86	98.392	ENSPNAG00000015104	pcbp3	97	98.392	Pygocentrus_nattereri
ENSELUG00000001560	-	84	97.360	ENSRNOG00000001245	Pcbp3	95	97.360	Rattus_norvegicus
ENSELUG00000001560	-	97	76.230	ENSRBIG00000028177	-	95	81.341	Rhinopithecus_bieti
ENSELUG00000001560	-	97	83.051	ENSSHAG00000007890	-	95	91.022	Sarcophilus_harrisii
ENSELUG00000001560	-	100	82.873	ENSSFOG00015014706	pcbp3	100	89.714	Scleropages_formosus
ENSELUG00000001560	-	91	98.165	ENSSFOG00015010205	pcbp3	100	98.165	Scleropages_formosus
ENSELUG00000001560	-	96	74.927	ENSSFOG00015007118	-	93	85.430	Scleropages_formosus
ENSELUG00000001560	-	98	85.174	ENSSMAG00000011929	pcbp3	97	94.839	Scophthalmus_maximus
ENSELUG00000001560	-	91	97.859	ENSSMAG00000003135	-	100	97.859	Scophthalmus_maximus
ENSELUG00000001560	-	91	92.424	ENSSDUG00000008502	-	100	92.424	Seriola_dumerili
ENSELUG00000001560	-	96	87.611	ENSSDUG00000011608	pcbp3	99	87.463	Seriola_dumerili
ENSELUG00000001560	-	96	87.611	ENSSLDG00000008518	pcbp3	99	87.463	Seriola_lalandi_dorsalis
ENSELUG00000001560	-	91	98.777	ENSSLDG00000020161	-	100	98.777	Seriola_lalandi_dorsalis
ENSELUG00000001560	-	94	74.438	ENSSPUG00000013214	-	88	86.082	Sphenodon_punctatus
ENSELUG00000001560	-	100	73.333	ENSSPAG00000023341	-	100	78.286	Stegastes_partitus
ENSELUG00000001560	-	90	86.667	ENSSPAG00000004190	-	97	94.346	Stegastes_partitus
ENSELUG00000001560	-	84	90.429	ENSTGUG00000008158	-	95	90.429	Taeniopygia_guttata
ENSELUG00000001560	-	97	80.845	ENSTGUG00000003316	-	95	87.926	Taeniopygia_guttata
ENSELUG00000001560	-	82	98.561	ENSTRUG00000006280	-	89	98.561	Takifugu_rubripes
ENSELUG00000001560	-	100	83.565	ENSTRUG00000013604	pcbp3	100	92.059	Takifugu_rubripes
ENSELUG00000001560	-	97	83.616	ENSTTRG00000015075	-	98	83.287	Tursiops_truncatus
ENSELUG00000001560	-	90	74.561	ENSXETG00000010491	pcbp2	77	74.788	Xenopus_tropicalis
ENSELUG00000001560	-	97	80.845	ENSXETG00000011483	pcbp1	95	89.474	Xenopus_tropicalis
ENSELUG00000001560	-	97	84.181	ENSXCOG00000020481	pcbp3	100	89.831	Xiphophorus_couchianus
ENSELUG00000001560	-	100	82.920	ENSXMAG00000008175	pcbp3	100	90.625	Xiphophorus_maculatus
ENSELUG00000001560	-	91	98.471	ENSXMAG00000028711	-	100	98.471	Xiphophorus_maculatus