EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000001805 (Gene tree)
Gene ID: 105020382
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 190904 bases
Position: chrLG23:14510961-14701864
Accession: 105020382
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000000200	TUDOR	PF00567.24	7.4e-27	1	1
ENSELUP00000000200	SNase	PF00565.17	3.2e-67	1	4
ENSELUP00000000200	SNase	PF00565.17	3.2e-67	2	4
ENSELUP00000000200	SNase	PF00565.17	3.2e-67	3	4
ENSELUP00000000200	SNase	PF00565.17	3.2e-67	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000019487	-	4684	XM_010887370	ENSELUP00000000200	946 (aa)	XP_010885672	-

Gene Model

Click here to download ENSELUG00000001805's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000001805's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000001805	snd1	95	83.055	ENSG00000197157	SND1	99	82.127	Homo_sapiens
ENSELUG00000001805	snd1	96	89.341	ENSAPOG00000017599	snd1	99	89.341	Acanthochromis_polyacanthus
ENSELUG00000001805	snd1	98	81.358	ENSAMEG00000004664	SND1	95	81.358	Ailuropoda_melanoleuca
ENSELUG00000001805	snd1	96	86.154	ENSACIG00000003551	snd1	99	86.154	Amphilophus_citrinellus
ENSELUG00000001805	snd1	96	89.560	ENSAOCG00000014166	snd1	99	89.560	Amphiprion_ocellaris
ENSELUG00000001805	snd1	96	89.451	ENSAPEG00000007067	snd1	99	89.451	Amphiprion_percula
ENSELUG00000001805	snd1	95	88.939	ENSATEG00000018475	snd1	89	88.939	Anabas_testudineus
ENSELUG00000001805	snd1	95	83.166	ENSANAG00000034463	SND1	99	83.296	Aotus_nancymaae
ENSELUG00000001805	snd1	96	88.462	ENSACLG00000022897	snd1	99	88.462	Astatotilapia_calliptera
ENSELUG00000001805	snd1	97	89.266	ENSAMXG00000016318	snd1	99	89.266	Astyanax_mexicanus
ENSELUG00000001805	snd1	95	83.166	ENSBTAG00000010692	SND1	99	82.237	Bos_taurus
ENSELUG00000001805	snd1	95	46.270	WBGene00006626	tsn-1	98	46.270	Caenorhabditis_elegans
ENSELUG00000001805	snd1	95	83.055	ENSCJAG00000017668	SND1	99	83.183	Callithrix_jacchus
ENSELUG00000001805	snd1	96	82.346	ENSCAFG00000001700	SND1	99	82.346	Canis_familiaris
ENSELUG00000001805	snd1	96	82.346	ENSCAFG00020021639	SND1	99	82.346	Canis_lupus_dingo
ENSELUG00000001805	snd1	95	83.055	ENSCHIG00000023390	SND1	98	83.183	Capra_hircus
ENSELUG00000001805	snd1	68	85.140	ENSTSYG00000004979	SND1	96	85.140	Carlito_syrichta
ENSELUG00000001805	snd1	96	71.397	ENSCAPG00000010677	SND1	99	71.397	Cavia_aperea
ENSELUG00000001805	snd1	95	82.832	ENSCPOG00000006251	SND1	99	81.908	Cavia_porcellus
ENSELUG00000001805	snd1	95	83.166	ENSCCAG00000036847	SND1	98	83.296	Cebus_capucinus
ENSELUG00000001805	snd1	95	83.278	ENSCATG00000035214	SND1	99	83.409	Cercocebus_atys
ENSELUG00000001805	snd1	95	82.943	ENSCLAG00000011796	SND1	98	83.278	Chinchilla_lanigera
ENSELUG00000001805	snd1	95	83.278	ENSCSAG00000010182	SND1	99	82.346	Chlorocebus_sabaeus
ENSELUG00000001805	snd1	75	76.471	ENSCHOG00000002218	SND1	86	76.471	Choloepus_hoffmanni
ENSELUG00000001805	snd1	96	83.224	ENSCPBG00000018094	SND1	99	83.224	Chrysemys_picta_bellii
ENSELUG00000001805	snd1	95	56.954	ENSCING00000000524	-	99	56.013	Ciona_intestinalis
ENSELUG00000001805	snd1	96	57.096	ENSCSAVG00000008807	-	99	56.893	Ciona_savignyi
ENSELUG00000001805	snd1	95	83.278	ENSCANG00000035119	SND1	99	82.346	Colobus_angolensis_palliatus
ENSELUG00000001805	snd1	95	82.832	ENSCGRG00001022514	Snd1	98	83.110	Cricetulus_griseus_chok1gshd
ENSELUG00000001805	snd1	94	82.957	ENSCGRG00000012277	Snd1	99	82.957	Cricetulus_griseus_crigri
ENSELUG00000001805	snd1	96	87.596	ENSCSEG00000008661	snd1	99	87.596	Cynoglossus_semilaevis
ENSELUG00000001805	snd1	96	88.145	ENSCVAG00000010316	snd1	99	88.145	Cyprinodon_variegatus
ENSELUG00000001805	snd1	97	88.280	ENSDARG00000006766	snd1	98	90.553	Danio_rerio
ENSELUG00000001805	snd1	94	81.102	ENSDNOG00000006795	SND1	99	81.102	Dasypus_novemcinctus
ENSELUG00000001805	snd1	95	82.943	ENSDORG00000000336	Snd1	99	82.018	Dipodomys_ordii
ENSELUG00000001805	snd1	95	49.299	FBgn0035121	Tudor-SN	99	48.936	Drosophila_melanogaster
ENSELUG00000001805	snd1	86	85.294	ENSETEG00000000375	SND1	92	85.294	Echinops_telfairi
ENSELUG00000001805	snd1	58	66.488	ENSEBUG00000014201	-	84	76.630	Eptatretus_burgeri
ENSELUG00000001805	snd1	95	82.127	ENSEASG00005008513	SND1	99	81.230	Equus_asinus_asinus
ENSELUG00000001805	snd1	95	83.278	ENSECAG00000011451	SND1	99	82.237	Equus_caballus
ENSELUG00000001805	snd1	95	74.247	ENSEEUG00000014737	SND1	99	73.575	Erinaceus_europaeus
ENSELUG00000001805	snd1	96	82.237	ENSFCAG00000008289	SND1	99	82.237	Felis_catus
ENSELUG00000001805	snd1	95	82.832	ENSFDAG00000015881	SND1	99	81.908	Fukomys_damarensis
ENSELUG00000001805	snd1	96	86.574	ENSFHEG00000004093	snd1	99	88.182	Fundulus_heteroclitus
ENSELUG00000001805	snd1	72	81.586	ENSGMOG00000018932	snd1	65	81.586	Gadus_morhua
ENSELUG00000001805	snd1	96	88.694	ENSGAFG00000008421	snd1	99	89.414	Gambusia_affinis
ENSELUG00000001805	snd1	96	58.198	ENSGACG00000019793	snd1	99	58.198	Gasterosteus_aculeatus
ENSELUG00000001805	snd1	95	83.278	ENSGGOG00000009614	SND1	99	83.409	Gorilla_gorilla
ENSELUG00000001805	snd1	96	88.462	ENSHBUG00000019135	snd1	99	88.462	Haplochromis_burtoni
ENSELUG00000001805	snd1	95	82.943	ENSHGLG00000003618	SND1	98	83.278	Heterocephalus_glaber_female
ENSELUG00000001805	snd1	96	82.359	ENSHGLG00100012449	SND1	99	82.359	Heterocephalus_glaber_male
ENSELUG00000001805	snd1	96	88.364	ENSHCOG00000005266	snd1	99	88.364	Hippocampus_comes
ENSELUG00000001805	snd1	97	87.076	ENSIPUG00000013279	snd1	99	87.076	Ictalurus_punctatus
ENSELUG00000001805	snd1	95	83.055	ENSSTOG00000002140	SND1	99	82.127	Ictidomys_tridecemlineatus
ENSELUG00000001805	snd1	95	83.166	ENSJJAG00000009561	Snd1	99	82.237	Jaculus_jaculus
ENSELUG00000001805	snd1	96	88.901	ENSKMAG00000016997	snd1	99	88.901	Kryptolebias_marmoratus
ENSELUG00000001805	snd1	96	91.107	ENSLBEG00000013563	snd1	99	89.572	Labrus_bergylta
ENSELUG00000001805	snd1	95	87.072	ENSLOCG00000015537	snd1	99	86.834	Lepisosteus_oculatus
ENSELUG00000001805	snd1	96	82.675	ENSLAFG00000009696	SND1	99	82.675	Loxodonta_africana
ENSELUG00000001805	snd1	95	83.278	ENSMFAG00000038114	SND1	99	83.409	Macaca_fascicularis
ENSELUG00000001805	snd1	95	83.278	ENSMMUG00000015432	SND1	99	82.346	Macaca_mulatta
ENSELUG00000001805	snd1	95	83.278	ENSMNEG00000039808	SND1	99	83.427	Macaca_nemestrina
ENSELUG00000001805	snd1	95	83.166	ENSMLEG00000029040	SND1	99	83.315	Mandrillus_leucophaeus
ENSELUG00000001805	snd1	96	88.681	ENSMAMG00000011739	snd1	99	88.681	Mastacembelus_armatus
ENSELUG00000001805	snd1	96	88.462	ENSMZEG00005005681	snd1	99	88.462	Maylandia_zebra
ENSELUG00000001805	snd1	95	83.278	ENSMICG00000000097	SND1	99	82.346	Microcebus_murinus
ENSELUG00000001805	snd1	95	83.278	ENSMOCG00000005040	Snd1	99	82.346	Microtus_ochrogaster
ENSELUG00000001805	snd1	96	89.133	ENSMMOG00000001795	snd1	99	89.133	Mola_mola
ENSELUG00000001805	snd1	95	82.497	ENSMODG00000015182	SND1	99	81.579	Monodelphis_domestica
ENSELUG00000001805	snd1	96	88.901	ENSMALG00000012071	snd1	99	88.901	Monopterus_albus
ENSELUG00000001805	snd1	95	83.055	MGP_CAROLIEiJ_G0028159	Snd1	99	83.250	Mus_caroli
ENSELUG00000001805	snd1	95	82.832	ENSMUSG00000001424	Snd1	99	81.908	Mus_musculus
ENSELUG00000001805	snd1	95	83.055	MGP_PahariEiJ_G0021917	Snd1	100	83.250	Mus_pahari
ENSELUG00000001805	snd1	95	83.055	MGP_SPRETEiJ_G0029159	Snd1	99	82.127	Mus_spretus
ENSELUG00000001805	snd1	96	81.908	ENSMPUG00000006545	SND1	99	81.469	Mustela_putorius_furo
ENSELUG00000001805	snd1	94	82.274	ENSMLUG00000017130	SND1	99	81.605	Myotis_lucifugus
ENSELUG00000001805	snd1	95	83.278	ENSNGAG00000011186	Snd1	99	82.346	Nannospalax_galili
ENSELUG00000001805	snd1	96	88.462	ENSNBRG00000006681	snd1	99	88.462	Neolamprologus_brichardi
ENSELUG00000001805	snd1	96	82.585	ENSNLEG00000012263	SND1	99	83.946	Nomascus_leucogenys
ENSELUG00000001805	snd1	88	85.294	ENSOPRG00000013405	SND1	92	85.294	Ochotona_princeps
ENSELUG00000001805	snd1	95	82.943	ENSODEG00000011502	SND1	99	82.237	Octodon_degus
ENSELUG00000001805	snd1	97	88.403	ENSONIG00000011481	snd1	97	88.403	Oreochromis_niloticus
ENSELUG00000001805	snd1	94	82.697	ENSOANG00000000817	SND1	97	82.697	Ornithorhynchus_anatinus
ENSELUG00000001805	snd1	96	81.579	ENSOCUG00000001620	SND1	99	81.579	Oryctolagus_cuniculus
ENSELUG00000001805	snd1	95	88.715	ENSORLG00000015201	snd1	99	88.145	Oryzias_latipes
ENSELUG00000001805	snd1	95	88.939	ENSORLG00020013991	snd1	99	88.364	Oryzias_latipes_hni
ENSELUG00000001805	snd1	95	88.939	ENSORLG00015012436	snd1	99	88.364	Oryzias_latipes_hsok
ENSELUG00000001805	snd1	96	88.474	ENSOMEG00000006406	snd1	99	88.474	Oryzias_melastigma
ENSELUG00000001805	snd1	95	83.092	ENSOGAG00000013356	SND1	94	82.166	Otolemur_garnettii
ENSELUG00000001805	snd1	94	80.834	ENSOARG00000002149	SND1	99	80.834	Ovis_aries
ENSELUG00000001805	snd1	95	83.166	ENSPPAG00000042947	SND1	99	83.296	Pan_paniscus
ENSELUG00000001805	snd1	96	82.237	ENSPPRG00000004494	SND1	99	82.237	Panthera_pardus
ENSELUG00000001805	snd1	96	82.127	ENSPTIG00000014214	SND1	99	82.127	Panthera_tigris_altaica
ENSELUG00000001805	snd1	95	83.166	ENSPTRG00000023911	SND1	99	83.296	Pan_troglodytes
ENSELUG00000001805	snd1	94	83.409	ENSPANG00000011997	SND1	99	83.409	Papio_anubis
ENSELUG00000001805	snd1	95	85.651	ENSPKIG00000023494	snd1	99	85.605	Paramormyrops_kingsleyae
ENSELUG00000001805	snd1	89	88.544	ENSPMGG00000003629	snd1	100	88.544	Periophthalmus_magnuspinnatus
ENSELUG00000001805	snd1	95	83.166	ENSPEMG00000010240	Snd1	99	82.237	Peromyscus_maniculatus_bairdii
ENSELUG00000001805	snd1	94	72.748	ENSPMAG00000007915	-	99	72.635	Petromyzon_marinus
ENSELUG00000001805	snd1	95	83.055	ENSPCIG00000011561	SND1	99	82.127	Phascolarctos_cinereus
ENSELUG00000001805	snd1	96	88.255	ENSPFOG00000001557	snd1	99	88.255	Poecilia_formosa
ENSELUG00000001805	snd1	99	86.596	ENSPLAG00000018459	snd1	99	86.596	Poecilia_latipinna
ENSELUG00000001805	snd1	96	88.474	ENSPMEG00000006803	snd1	99	88.474	Poecilia_mexicana
ENSELUG00000001805	snd1	96	88.474	ENSPREG00000002189	snd1	99	88.474	Poecilia_reticulata
ENSELUG00000001805	snd1	88	85.294	ENSPPYG00000017972	SND1	99	85.294	Pongo_abelii
ENSELUG00000001805	snd1	95	73.021	ENSPCAG00000011305	SND1	99	72.368	Procavia_capensis
ENSELUG00000001805	snd1	95	83.278	ENSPCOG00000026791	SND1	99	83.427	Propithecus_coquereli
ENSELUG00000001805	snd1	95	81.159	ENSPVAG00000013945	SND1	99	80.263	Pteropus_vampyrus
ENSELUG00000001805	snd1	96	88.462	ENSPNYG00000000932	snd1	99	88.462	Pundamilia_nyererei
ENSELUG00000001805	snd1	97	88.171	ENSPNAG00000001206	snd1	99	88.171	Pygocentrus_nattereri
ENSELUG00000001805	snd1	95	83.055	ENSRNOG00000031173	Snd1	99	82.346	Rattus_norvegicus
ENSELUG00000001805	snd1	69	84.249	ENSRBIG00000027782	-	93	85.660	Rhinopithecus_bieti
ENSELUG00000001805	snd1	95	83.278	ENSRROG00000033020	SND1	99	82.346	Rhinopithecus_roxellana
ENSELUG00000001805	snd1	95	83.055	ENSSBOG00000032461	SND1	99	83.183	Saimiri_boliviensis_boliviensis
ENSELUG00000001805	snd1	94	80.000	ENSSHAG00000015359	SND1	99	80.000	Sarcophilus_harrisii
ENSELUG00000001805	snd1	96	85.932	ENSSFOG00015001103	snd1	99	85.932	Scleropages_formosus
ENSELUG00000001805	snd1	97	88.986	ENSSMAG00000001932	snd1	95	88.986	Scophthalmus_maximus
ENSELUG00000001805	snd1	97	89.387	ENSSDUG00000002699	snd1	94	89.387	Seriola_dumerili
ENSELUG00000001805	snd1	96	82.198	ENSSLDG00000001950	snd1	99	82.198	Seriola_lalandi_dorsalis
ENSELUG00000001805	snd1	83	78.414	ENSSARG00000004877	SND1	92	78.414	Sorex_araneus
ENSELUG00000001805	snd1	60	79.275	ENSSPUG00000017586	SND1	96	79.275	Sphenodon_punctatus
ENSELUG00000001805	snd1	70	89.358	ENSSPAG00000021398	snd1	98	89.358	Stegastes_partitus
ENSELUG00000001805	snd1	95	83.055	ENSSSCG00000016590	SND1	99	82.127	Sus_scrofa
ENSELUG00000001805	snd1	96	88.945	ENSTRUG00000014067	snd1	99	87.816	Takifugu_rubripes
ENSELUG00000001805	snd1	96	88.364	ENSTNIG00000011019	snd1	99	88.364	Tetraodon_nigroviridis
ENSELUG00000001805	snd1	90	77.817	ENSTBEG00000003999	SND1	100	77.817	Tupaia_belangeri
ENSELUG00000001805	snd1	95	79.264	ENSTTRG00000006059	SND1	99	78.399	Tursiops_truncatus
ENSELUG00000001805	snd1	65	74.413	ENSUAMG00000002820	-	89	74.413	Ursus_americanus
ENSELUG00000001805	snd1	84	83.460	ENSUAMG00000005604	-	93	83.460	Ursus_americanus
ENSELUG00000001805	snd1	96	82.237	ENSUMAG00000005960	SND1	99	82.237	Ursus_maritimus
ENSELUG00000001805	snd1	70	85.294	ENSVPAG00000008302	SND1	74	85.294	Vicugna_pacos
ENSELUG00000001805	snd1	96	82.237	ENSVVUG00000007226	SND1	99	82.237	Vulpes_vulpes
ENSELUG00000001805	snd1	94	79.190	ENSXETG00000023043	snd1	100	79.157	Xenopus_tropicalis
ENSELUG00000001805	snd1	89	86.667	ENSXCOG00000013629	snd1	99	86.667	Xiphophorus_couchianus
ENSELUG00000001805	snd1	96	88.913	ENSXMAG00000011469	snd1	99	88.913	Xiphophorus_maculatus