EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSELUG00000001811 (Gene tree)
Gene ID
105008385
Gene Symbol
pabpc1l
Alias
fi20g03|wu:fi20g03|zgc:55855
Full Name
embryonic polyadenylate-binding protein
Gene Type
protein_coding
Species
Esox_lucius
Status
putative
Strand
Plus strand
Length
99001 bases
Position
chrLG12:27230378-27329378
Accession
105008385
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSELUP00000000196PABPPF00658.181.2e-2811
ENSELUP00000000191PABPPF00658.181.5e-2811
ENSELUP00000000193PABPPF00658.181.6e-2811
ENSELUP00000026059PABPPF00658.181.6e-2811
ENSELUP00000026058PABPPF00658.181.6e-2811
ENSELUP00000000196RRM_1PF00076.222.3e-8614
ENSELUP00000000196RRM_1PF00076.222.3e-8624
ENSELUP00000000196RRM_1PF00076.222.3e-8634
ENSELUP00000000196RRM_1PF00076.222.3e-8644
ENSELUP00000026058RRM_1PF00076.223.9e-8614
ENSELUP00000026058RRM_1PF00076.223.9e-8624
ENSELUP00000026058RRM_1PF00076.223.9e-8634
ENSELUP00000026058RRM_1PF00076.223.9e-8644
ENSELUP00000000193RRM_1PF00076.224e-8614
ENSELUP00000000193RRM_1PF00076.224e-8624
ENSELUP00000000193RRM_1PF00076.224e-8634
ENSELUP00000000193RRM_1PF00076.224e-8644
ENSELUP00000026059RRM_1PF00076.224e-8614
ENSELUP00000026059RRM_1PF00076.224e-8624
ENSELUP00000026059RRM_1PF00076.224e-8634
ENSELUP00000026059RRM_1PF00076.224e-8644
ENSELUP00000000191RRM_1PF00076.224.2e-8614
ENSELUP00000000191RRM_1PF00076.224.2e-8624
ENSELUP00000000191RRM_1PF00076.224.2e-8634
ENSELUP00000000191RRM_1PF00076.224.2e-8644
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSELUT00000019479-3195XM_020051424ENSELUP00000000193656 (aa)XP_019906983UPI000973201D
ENSELUT00000019473-3535-ENSELUP00000026058659 (aa)--
ENSELUT00000019482-1680-ENSELUP00000000196559 (aa)--
ENSELUT00000019474-3961XM_020051425ENSELUP00000026059656 (aa)XP_019906984UPI000973201D
ENSELUT00000019477-3880XM_010867675ENSELUP00000000191629 (aa)XP_010865977UPI000576A893
Gene Model
Click here to download ENSELUG00000001811's gene model file
Pathways
Pathway IDPathway NameSource
els03013RNA transportKEGG
els03015mRNA surveillance pathwayKEGG
els03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000001811's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSELUG00000001811pabpc1l5635.616ENSELUG00000013477celf3b6435.616
ENSELUG00000001811pabpc1l6836.047ENSELUG00000007383celf5b5636.047
ENSELUG00000001811pabpc1l6735.789ENSELUG00000006905-6335.789
ENSELUG00000001811pabpc1l6536.000ENSELUG00000012561rbm195836.000
ENSELUG00000001811pabpc1l9970.533ENSELUG00000003614pabpc1a9970.533
ENSELUG00000001811pabpc1l6736.145ENSELUG00000023043elavl39236.145
ENSELUG00000001811pabpc1l5736.047ENSELUG00000023173celf16836.047
ENSELUG00000001811pabpc1l5136.047ENSELUG00000018986celf5a6134.848
ENSELUG00000001811pabpc1l6530.682ENSELUG00000005615-6730.682
ENSELUG00000001811pabpc1l7049.527ENSELUG00000005247-8449.527
ENSELUG00000001811pabpc1l6736.145ENSELUG00000010026ELAVL28336.145
ENSELUG00000001811pabpc1l6431.034ENSELUG00000006033ncl5133.793
ENSELUG00000001811pabpc1l6030.303ENSELUG00000022826-7530.303
ENSELUG00000001811pabpc1l6754.310ENSELUG00000005389-9754.310
ENSELUG00000001811pabpc1l9976.629ENSELUG00000015062-9876.629
ENSELUG00000001811pabpc1l5336.047ENSELUG00000005848-6136.047
ENSELUG00000001811pabpc1l5435.616ENSELUG00000006121celf3a6335.616
ENSELUG00000001811pabpc1l6732.500ENSELUG00000008025elavl48032.500
ENSELUG00000001811pabpc1l6430.256ENSELUG00000017686trnau1apa5930.256
ENSELUG00000001811pabpc1l9966.254ENSELUG00000003195pabpc49767.081
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSELUG00000001811pabpc1l9970.288ENSG00000101104PABPC1L9877.538Homo_sapiens
ENSELUG00000001811pabpc1l9976.000ENSAPOG00000010842pabpc1l9976.000Acanthochromis_polyacanthus
ENSELUG00000001811pabpc1l9577.389ENSAMEG00000004099PABPC1L10065.692Ailuropoda_melanoleuca
ENSELUG00000001811pabpc1l9982.670ENSACIG00000021004-10082.670Amphilophus_citrinellus
ENSELUG00000001811pabpc1l9582.759ENSAOCG00000006167-10077.742Amphiprion_ocellaris
ENSELUG00000001811pabpc1l10077.715ENSAPEG00000010558-9986.239Amphiprion_percula
ENSELUG00000001811pabpc1l10081.487ENSATEG00000007428pabpc1l10082.437Anabas_testudineus
ENSELUG00000001811pabpc1l9880.094ENSAPLG00000008415PABPC1L9979.310Anas_platyrhynchos
ENSELUG00000001811pabpc1l9581.422ENSACAG00000011841PABPC1L9975.394Anolis_carolinensis
ENSELUG00000001811pabpc1l9969.586ENSANAG00000026826PABPC1L9969.586Aotus_nancymaae
ENSELUG00000001811pabpc1l10080.604ENSACLG00000024791pabpc1l10080.604Astatotilapia_calliptera
ENSELUG00000001811pabpc1l9786.139ENSAMXG00000013552pabpc1l10082.567Astyanax_mexicanus
ENSELUG00000001811pabpc1l6587.500ENSBTAG00000055300-10087.500Bos_taurus
ENSELUG00000001811pabpc1l6769.106ENSBTAG00000016849PABPC1L7569.231Bos_taurus
ENSELUG00000001811pabpc1l9970.064ENSCJAG00000017628PABPC1L9970.064Callithrix_jacchus
ENSELUG00000001811pabpc1l6678.736ENSCJAG00000038506-10078.736Callithrix_jacchus
ENSELUG00000001811pabpc1l9379.775ENSCAFG00000009573PABPC1L10064.472Canis_familiaris
ENSELUG00000001811pabpc1l9969.697ENSCAFG00020013828PABPC1L9969.697Canis_lupus_dingo
ENSELUG00000001811pabpc1l9868.994ENSCHIG00000025759PABPC1L9168.994Capra_hircus
ENSELUG00000001811pabpc1l9969.059ENSTSYG00000006645PABPC1L9969.059Carlito_syrichta
ENSELUG00000001811pabpc1l9963.929ENSCAPG00000014519PABPC1L9963.929Cavia_aperea
ENSELUG00000001811pabpc1l9967.143ENSCPOG00000013633PABPC1L9967.143Cavia_porcellus
ENSELUG00000001811pabpc1l9969.219ENSCCAG00000023338PABPC1L9970.016Cebus_capucinus
ENSELUG00000001811pabpc1l9970.447ENSCATG00000034065PABPC1L9970.952Cercocebus_atys
ENSELUG00000001811pabpc1l9967.143ENSCLAG00000005298PABPC1L9967.302Chinchilla_lanigera
ENSELUG00000001811pabpc1l9970.128ENSCSAG00000014242PABPC1L9970.973Chlorocebus_sabaeus
ENSELUG00000001811pabpc1l7881.651ENSCPBG00000017755-9981.716Chrysemys_picta_bellii
ENSELUG00000001811pabpc1l5587.500ENSCPBG00000007810-8387.500Chrysemys_picta_bellii
ENSELUG00000001811pabpc1l8766.949ENSCING00000002796-9751.172Ciona_intestinalis
ENSELUG00000001811pabpc1l9476.087ENSCSAVG00000003102-10083.221Ciona_savignyi
ENSELUG00000001811pabpc1l9977.174ENSCSAVG00000004246-9670.694Ciona_savignyi
ENSELUG00000001811pabpc1l9966.824ENSCANG00000037530PABPC1L9967.033Colobus_angolensis_palliatus
ENSELUG00000001811pabpc1l9962.618ENSCGRG00001021938Pabpc1l9962.618Cricetulus_griseus_chok1gshd
ENSELUG00000001811pabpc1l9962.618ENSCGRG00000007946Pabpc1l9962.618Cricetulus_griseus_crigri
ENSELUG00000001811pabpc1l9977.058ENSCSEG00000021295pabpc1l9977.058Cynoglossus_semilaevis
ENSELUG00000001811pabpc1l10080.190ENSCVAG00000015943-9995.385Cyprinodon_variegatus
ENSELUG00000001811pabpc1l9982.250ENSDARG00000002597pabpc1l8895.385Danio_rerio
ENSELUG00000001811pabpc1l9971.019ENSDNOG00000048450PABPC1L9971.019Dasypus_novemcinctus
ENSELUG00000001811pabpc1l9967.834ENSDORG00000001067Pabpc1l9967.834Dipodomys_ordii
ENSELUG00000001811pabpc1l9977.642ENSETEG00000009969PABPC1L7277.642Echinops_telfairi
ENSELUG00000001811pabpc1l6585.714ENSEASG00005023408-10085.714Equus_asinus_asinus
ENSELUG00000001811pabpc1l6073.596ENSEASG00005023407-7173.596Equus_asinus_asinus
ENSELUG00000001811pabpc1l7268.919ENSECAG00000040139-8467.373Equus_caballus
ENSELUG00000001811pabpc1l9967.675ENSEEUG00000005978PABPC1L9967.675Erinaceus_europaeus
ENSELUG00000001811pabpc1l9970.476ENSFCAG00000011692PABPC1L9970.476Felis_catus
ENSELUG00000001811pabpc1l8573.840ENSFALG00000005372PABPC1L9073.840Ficedula_albicollis
ENSELUG00000001811pabpc1l9967.177ENSFDAG00000008291PABPC1L9967.007Fukomys_damarensis
ENSELUG00000001811pabpc1l10081.558ENSFHEG00000003398pabpc1l10081.558Fundulus_heteroclitus
ENSELUG00000001811pabpc1l9389.130ENSGMOG00000004437pabpc1l9980.255Gadus_morhua
ENSELUG00000001811pabpc1l9574.579ENSGALG00000004123PABPC1L9881.884Gallus_gallus
ENSELUG00000001811pabpc1l10077.912ENSGAFG00000021057pabpc1l10077.912Gambusia_affinis
ENSELUG00000001811pabpc1l9980.952ENSGACG00000002792pabpc1l10080.952Gasterosteus_aculeatus
ENSELUG00000001811pabpc1l9983.333ENSGAGG00000000589PABPC1L9883.333Gopherus_agassizii
ENSELUG00000001811pabpc1l9970.288ENSGGOG00000004584PABPC1L9970.494Gorilla_gorilla
ENSELUG00000001811pabpc1l10080.445ENSHBUG00000006134pabpc1l10080.445Haplochromis_burtoni
ENSELUG00000001811pabpc1l10067.874ENSHGLG00000008434PABPC1L9968.189Heterocephalus_glaber_female
ENSELUG00000001811pabpc1l6785.393ENSHGLG00100019506-10085.393Heterocephalus_glaber_male
ENSELUG00000001811pabpc1l10067.874ENSHGLG00100012151PABPC1L9968.189Heterocephalus_glaber_male
ENSELUG00000001811pabpc1l9684.634ENSHCOG00000009270pabpc1l10079.139Hippocampus_comes
ENSELUG00000001811pabpc1l6660.406ENSIPUG00000006780-9660.406Ictalurus_punctatus
ENSELUG00000001811pabpc1l10083.168ENSIPUG00000012602pabpc1l10082.753Ictalurus_punctatus
ENSELUG00000001811pabpc1l6562.431ENSIPUG00000006760-9162.431Ictalurus_punctatus
ENSELUG00000001811pabpc1l9969.427ENSSTOG00000003739PABPC1L9969.427Ictidomys_tridecemlineatus
ENSELUG00000001811pabpc1l9956.911ENSJJAG00000022406Pabpc1l9952.932Jaculus_jaculus
ENSELUG00000001811pabpc1l10079.048ENSKMAG00000016847pabpc1l10079.048Kryptolebias_marmoratus
ENSELUG00000001811pabpc1l10081.081ENSLBEG00000010084pabpc1l10081.081Labrus_bergylta
ENSELUG00000001811pabpc1l9781.532ENSLACG00000005762PABPC1L9876.766Latimeria_chalumnae
ENSELUG00000001811pabpc1l9984.335ENSLOCG00000007519pabpc1l9984.335Lepisosteus_oculatus
ENSELUG00000001811pabpc1l9968.927ENSLAFG00000003553PABPC1L10068.927Loxodonta_africana
ENSELUG00000001811pabpc1l9969.952ENSMFAG00000040365PABPC1L9970.794Macaca_fascicularis
ENSELUG00000001811pabpc1l9968.839ENSMNEG00000032298PABPC1L9969.683Macaca_nemestrina
ENSELUG00000001811pabpc1l9970.447ENSMLEG00000043139PABPC1L9970.952Mandrillus_leucophaeus
ENSELUG00000001811pabpc1l9780.851ENSMAMG00000011854pabpc1l9780.851Mastacembelus_armatus
ENSELUG00000001811pabpc1l10080.604ENSMZEG00005023713pabpc1l10080.604Maylandia_zebra
ENSELUG00000001811pabpc1l9979.817ENSMGAG00000003674PABPC1L9979.817Meleagris_gallopavo
ENSELUG00000001811pabpc1l9960.597ENSMOCG00000013186Pabpc1l9960.597Microtus_ochrogaster
ENSELUG00000001811pabpc1l9980.662ENSMMOG00000020574-9093.846Mola_mola
ENSELUG00000001811pabpc1l9772.168ENSMODG00000016198PABPC1L9972.168Monodelphis_domestica
ENSELUG00000001811pabpc1l9981.075ENSMALG00000021622pabpc1l10080.984Monopterus_albus
ENSELUG00000001811pabpc1l9961.189MGP_CAROLIEiJ_G0024627Pabpc1l9961.189Mus_caroli
ENSELUG00000001811pabpc1l9961.033ENSMUSG00000054582Pabpc1l9961.033Mus_musculus
ENSELUG00000001811pabpc1l10061.622MGP_PahariEiJ_G0026071Pabpc1l10061.622Mus_pahari
ENSELUG00000001811pabpc1l9961.189MGP_SPRETEiJ_G0025549Pabpc1l9961.189Mus_spretus
ENSELUG00000001811pabpc1l9970.159ENSMPUG00000017646PABPC1L9970.159Mustela_putorius_furo
ENSELUG00000001811pabpc1l9866.403ENSMLUG00000006324PABPC1L9866.403Myotis_lucifugus
ENSELUG00000001811pabpc1l9963.507ENSNGAG00000010458Pabpc1l9963.507Nannospalax_galili
ENSELUG00000001811pabpc1l9984.123ENSNBRG00000016633pabpc1l10084.123Neolamprologus_brichardi
ENSELUG00000001811pabpc1l8480.645ENSMEUG00000007905-7780.645Notamacropus_eugenii
ENSELUG00000001811pabpc1l9968.421ENSOPRG00000011846PABPC1L9968.421Ochotona_princeps
ENSELUG00000001811pabpc1l6479.375ENSODEG00000002920-9779.375Octodon_degus
ENSELUG00000001811pabpc1l9965.614ENSODEG00000015482PABPC1L9965.614Octodon_degus
ENSELUG00000001811pabpc1l10080.763ENSONIG00000017314pabpc1l10080.763Oreochromis_niloticus
ENSELUG00000001811pabpc1l8377.419ENSOANG00000015793-10063.066Ornithorhynchus_anatinus
ENSELUG00000001811pabpc1l9482.418ENSOCUG00000003005PABPC1L9966.616Oryctolagus_cuniculus
ENSELUG00000001811pabpc1l9980.465ENSORLG00000010322pabpc1l10080.465Oryzias_latipes
ENSELUG00000001811pabpc1l9980.465ENSORLG00020021193pabpc1l10080.465Oryzias_latipes_hni
ENSELUG00000001811pabpc1l9980.465ENSORLG00015017018pabpc1l10080.465Oryzias_latipes_hsok
ENSELUG00000001811pabpc1l10078.664ENSOMEG00000010789pabpc1l10078.664Oryzias_melastigma
ENSELUG00000001811pabpc1l9969.157ENSOGAG00000032999PABPC1L9969.157Otolemur_garnettii
ENSELUG00000001811pabpc1l9969.649ENSOARG00000004578PABPC1L9969.649Ovis_aries
ENSELUG00000001811pabpc1l9970.128ENSPPAG00000039677PABPC1L9970.335Pan_paniscus
ENSELUG00000001811pabpc1l6968.000ENSPPRG00000019327-9868.000Panthera_pardus
ENSELUG00000001811pabpc1l9870.626ENSPTIG00000006524PABPC1L9970.626Panthera_tigris_altaica
ENSELUG00000001811pabpc1l7177.231ENSPTRG00000013531PABPC1L9877.231Pan_troglodytes
ENSELUG00000001811pabpc1l9970.447ENSPANG00000018788PABPC1L9970.952Papio_anubis
ENSELUG00000001811pabpc1l10083.333ENSPKIG00000007322pabpc1l10083.333Paramormyrops_kingsleyae
ENSELUG00000001811pabpc1l5982.443ENSPKIG00000016810-9382.443Paramormyrops_kingsleyae
ENSELUG00000001811pabpc1l7582.775ENSPSIG00000013289PABPC1L9982.775Pelodiscus_sinensis
ENSELUG00000001811pabpc1l6994.697ENSPMGG00000023117pabpc1l9994.697Periophthalmus_magnuspinnatus
ENSELUG00000001811pabpc1l7777.249ENSPMGG00000023121-9175.635Periophthalmus_magnuspinnatus
ENSELUG00000001811pabpc1l9960.502ENSPEMG00000020671Pabpc1l9961.453Peromyscus_maniculatus_bairdii
ENSELUG00000001811pabpc1l10081.081ENSPFOG00000013241pabpc1l10081.081Poecilia_formosa
ENSELUG00000001811pabpc1l10081.883ENSPLAG00000017490-10081.883Poecilia_latipinna
ENSELUG00000001811pabpc1l5895.385ENSPLAG00000023686-9295.385Poecilia_latipinna
ENSELUG00000001811pabpc1l10080.922ENSPMEG00000007677pabpc1l10080.922Poecilia_mexicana
ENSELUG00000001811pabpc1l5895.385ENSPMEG00000009185-8895.385Poecilia_mexicana
ENSELUG00000001811pabpc1l7487.651ENSPREG00000015886pabpc1l9987.651Poecilia_reticulata
ENSELUG00000001811pabpc1l9969.537ENSPPYG00000011042PABPC1L9970.382Pongo_abelii
ENSELUG00000001811pabpc1l7485.938ENSPCAG00000011787-7585.938Procavia_capensis
ENSELUG00000001811pabpc1l9969.475ENSPCOG00000020630PABPC1L9969.475Propithecus_coquereli
ENSELUG00000001811pabpc1l9968.900ENSPVAG00000012663PABPC1L9968.900Pteropus_vampyrus
ENSELUG00000001811pabpc1l9984.123ENSPNYG00000004101pabpc1l10084.123Pundamilia_nyererei
ENSELUG00000001811pabpc1l9685.294ENSPNAG00000021248pabpc1l10076.228Pygocentrus_nattereri
ENSELUG00000001811pabpc1l9961.295ENSRNOG00000012750Pabpc1l9961.514Rattus_norvegicus
ENSELUG00000001811pabpc1l9970.494ENSRBIG00000035381PABPC1L9970.701Rhinopithecus_bieti
ENSELUG00000001811pabpc1l9970.335ENSRROG00000044498PABPC1L9970.541Rhinopithecus_roxellana
ENSELUG00000001811pabpc1l9969.745ENSSBOG00000009532-9969.745Saimiri_boliviensis_boliviensis
ENSELUG00000001811pabpc1l9770.245ENSSHAG00000011446PABPC1L10070.245Sarcophilus_harrisii
ENSELUG00000001811pabpc1l10084.628ENSSFOG00015017304pabpc1l10084.628Scleropages_formosus
ENSELUG00000001811pabpc1l9987.810ENSSMAG00000010516pabpc1l9893.382Scophthalmus_maximus
ENSELUG00000001811pabpc1l10081.399ENSSDUG00000014743pabpc1l10081.399Seriola_dumerili
ENSELUG00000001811pabpc1l9885.071ENSSLDG00000006981pabpc1l9889.498Seriola_lalandi_dorsalis
ENSELUG00000001811pabpc1l9879.372ENSSPUG00000004233PABPC1L9975.079Sphenodon_punctatus
ENSELUG00000001811pabpc1l10081.614ENSSPAG00000017137pabpc1l10081.614Stegastes_partitus
ENSELUG00000001811pabpc1l9969.365ENSSSCG00000007382PABPC1L9969.365Sus_scrofa
ENSELUG00000001811pabpc1l9977.902ENSTGUG00000005114PABPC1L10077.902Taeniopygia_guttata
ENSELUG00000001811pabpc1l9781.148ENSTRUG00000011085pabpc1l9781.148Takifugu_rubripes
ENSELUG00000001811pabpc1l9979.520ENSTNIG00000017903pabpc1l9879.520Tetraodon_nigroviridis
ENSELUG00000001811pabpc1l9477.474ENSTBEG00000002851PABPC1L7977.474Tupaia_belangeri
ENSELUG00000001811pabpc1l9468.624ENSTTRG00000007618PABPC1L10068.791Tursiops_truncatus
ENSELUG00000001811pabpc1l9969.880ENSUAMG00000017682PABPC1L9969.880Ursus_americanus
ENSELUG00000001811pabpc1l7475.000ENSUMAG00000025436PABPC1L9375.000Ursus_maritimus
ENSELUG00000001811pabpc1l9781.395ENSVVUG00000018939PABPC1L9681.395Vulpes_vulpes
ENSELUG00000001811pabpc1l9681.553ENSXETG00000022831pabpc1l9972.742Xenopus_tropicalis
ENSELUG00000001811pabpc1l9883.810ENSXCOG00000005459pabpc1l9990.780Xiphophorus_couchianus
ENSELUG00000001811pabpc1l10080.817ENSXMAG00000017135pabpc1l10080.817Xiphophorus_maculatus

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