EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000002322 (Gene tree)
Gene ID: 105014097
Gene Symbol: lsm1 (1 of many)
Alias: zgc:101136
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 7679 bases
Position: chrLG13:8450251-8457929
Accession: 105014097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000026447	LSM	PF01423.22	5.7e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000018503	-	2569	XM_010876116	ENSELUP00000026447	133 (aa)	XP_010874418	UPI000181FD09

Gene Model

Click here to download ENSELUG00000002322's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000002322's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000002322	lsm1	100	80.451	ENSELUG00000023374	lsm1	100	80.451
ENSELUG00000002322	lsm1	51	36.232	ENSELUG00000010138	lsm8	72	36.232

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000002322	lsm1	100	86.466	ENSG00000175324	LSM1	100	86.466	Homo_sapiens
ENSELUG00000002322	lsm1	100	93.233	ENSAPOG00000010833	lsm1	100	93.233	Acanthochromis_polyacanthus
ENSELUG00000002322	lsm1	100	86.466	ENSAMEG00000011141	LSM1	100	86.466	Ailuropoda_melanoleuca
ENSELUG00000002322	lsm1	58	97.403	ENSACIG00000019593	lsm1	64	97.403	Amphilophus_citrinellus
ENSELUG00000002322	lsm1	100	93.233	ENSAOCG00000017096	lsm1	100	93.233	Amphiprion_ocellaris
ENSELUG00000002322	lsm1	100	93.233	ENSAOCG00000017997	-	100	93.233	Amphiprion_ocellaris
ENSELUG00000002322	lsm1	100	93.233	ENSAPEG00000011669	lsm1	100	93.233	Amphiprion_percula
ENSELUG00000002322	lsm1	100	94.737	ENSATEG00000022266	lsm1	100	94.737	Anabas_testudineus
ENSELUG00000002322	lsm1	100	86.466	ENSANAG00000027785	LSM1	100	86.466	Aotus_nancymaae
ENSELUG00000002322	lsm1	100	95.489	ENSACLG00000011400	lsm1	100	95.489	Astatotilapia_calliptera
ENSELUG00000002322	lsm1	100	84.211	ENSAMXG00000005441	lsm1	100	84.211	Astyanax_mexicanus
ENSELUG00000002322	lsm1	100	85.714	ENSBTAG00000001612	LSM1	100	85.714	Bos_taurus
ENSELUG00000002322	lsm1	70	56.989	WBGene00003076	lsm-1	73	56.989	Caenorhabditis_elegans
ENSELUG00000002322	lsm1	100	85.714	ENSCJAG00000048015	LSM1	100	85.714	Callithrix_jacchus
ENSELUG00000002322	lsm1	100	86.466	ENSCAFG00000006113	LSM1	100	86.466	Canis_familiaris
ENSELUG00000002322	lsm1	100	86.466	ENSCAFG00020001822	LSM1	100	86.466	Canis_lupus_dingo
ENSELUG00000002322	lsm1	100	86.466	ENSCHIG00000013194	LSM1	100	86.466	Capra_hircus
ENSELUG00000002322	lsm1	100	86.466	ENSTSYG00000010394	LSM1	100	86.466	Carlito_syrichta
ENSELUG00000002322	lsm1	100	86.466	ENSCPOG00000032671	LSM1	100	86.466	Cavia_porcellus
ENSELUG00000002322	lsm1	100	86.466	ENSCCAG00000037171	LSM1	100	86.466	Cebus_capucinus
ENSELUG00000002322	lsm1	100	86.466	ENSCATG00000020377	LSM1	100	86.466	Cercocebus_atys
ENSELUG00000002322	lsm1	100	84.962	ENSCLAG00000001137	LSM1	100	84.962	Chinchilla_lanigera
ENSELUG00000002322	lsm1	100	86.466	ENSCSAG00000015485	LSM1	100	86.466	Chlorocebus_sabaeus
ENSELUG00000002322	lsm1	100	85.714	ENSCHOG00000006030	LSM1	100	85.714	Choloepus_hoffmanni
ENSELUG00000002322	lsm1	95	79.528	ENSCPBG00000006569	LSM1	86	79.528	Chrysemys_picta_bellii
ENSELUG00000002322	lsm1	99	63.636	ENSCING00000013536	-	100	62.879	Ciona_intestinalis
ENSELUG00000002322	lsm1	100	86.466	ENSCANG00000019173	LSM1	100	86.466	Colobus_angolensis_palliatus
ENSELUG00000002322	lsm1	100	85.714	ENSCGRG00001024560	-	100	85.714	Cricetulus_griseus_chok1gshd
ENSELUG00000002322	lsm1	80	72.973	ENSCGRG00001002259	-	97	72.973	Cricetulus_griseus_chok1gshd
ENSELUG00000002322	lsm1	80	72.973	ENSCGRG00000013603	-	97	72.973	Cricetulus_griseus_crigri
ENSELUG00000002322	lsm1	100	85.714	ENSCGRG00000006554	-	100	85.714	Cricetulus_griseus_crigri
ENSELUG00000002322	lsm1	100	93.985	ENSCSEG00000010570	lsm1	92	93.985	Cynoglossus_semilaevis
ENSELUG00000002322	lsm1	100	92.481	ENSCSEG00000008319	lsm1	92	92.481	Cynoglossus_semilaevis
ENSELUG00000002322	lsm1	100	93.233	ENSCVAG00000003871	lsm1	100	93.233	Cyprinodon_variegatus
ENSELUG00000002322	lsm1	100	83.459	ENSDARG00000043177	lsm1	100	83.459	Danio_rerio
ENSELUG00000002322	lsm1	100	85.714	ENSDNOG00000032911	-	100	85.714	Dasypus_novemcinctus
ENSELUG00000002322	lsm1	100	86.466	ENSDNOG00000046387	-	100	86.466	Dasypus_novemcinctus
ENSELUG00000002322	lsm1	89	68.067	ENSDNOG00000046620	-	100	68.067	Dasypus_novemcinctus
ENSELUG00000002322	lsm1	99	81.818	ENSDNOG00000030989	-	99	81.818	Dasypus_novemcinctus
ENSELUG00000002322	lsm1	100	86.466	ENSDORG00000028172	Lsm1	100	86.466	Dipodomys_ordii
ENSELUG00000002322	lsm1	93	58.871	FBgn0261067	LSm1	91	58.871	Drosophila_melanogaster
ENSELUG00000002322	lsm1	100	84.962	ENSEASG00005016677	LSM1	100	84.962	Equus_asinus_asinus
ENSELUG00000002322	lsm1	100	84.962	ENSECAG00000010461	LSM1	100	84.962	Equus_caballus
ENSELUG00000002322	lsm1	72	79.167	ENSEEUG00000015181	LSM1	97	79.167	Erinaceus_europaeus
ENSELUG00000002322	lsm1	100	86.466	ENSFCAG00000039335	LSM1	100	86.466	Felis_catus
ENSELUG00000002322	lsm1	89	84.746	ENSFALG00000006723	LSM1	100	84.746	Ficedula_albicollis
ENSELUG00000002322	lsm1	100	86.466	ENSFDAG00000007658	LSM1	100	86.466	Fukomys_damarensis
ENSELUG00000002322	lsm1	100	93.233	ENSFHEG00000009556	lsm1	100	93.233	Fundulus_heteroclitus
ENSELUG00000002322	lsm1	100	94.737	ENSGMOG00000016651	lsm1	98	94.737	Gadus_morhua
ENSELUG00000002322	lsm1	100	84.962	ENSGALG00000003245	LSM1	100	84.962	Gallus_gallus
ENSELUG00000002322	lsm1	100	93.233	ENSGAFG00000011355	lsm1	100	93.233	Gambusia_affinis
ENSELUG00000002322	lsm1	100	95.489	ENSGACG00000011763	lsm1	98	95.489	Gasterosteus_aculeatus
ENSELUG00000002322	lsm1	100	86.466	ENSGAGG00000024065	LSM1	100	86.466	Gopherus_agassizii
ENSELUG00000002322	lsm1	100	86.466	ENSGGOG00000022658	LSM1	100	86.466	Gorilla_gorilla
ENSELUG00000002322	lsm1	100	95.489	ENSHBUG00000010897	lsm1	100	95.489	Haplochromis_burtoni
ENSELUG00000002322	lsm1	100	69.173	ENSHGLG00000017574	-	100	69.173	Heterocephalus_glaber_female
ENSELUG00000002322	lsm1	100	86.466	ENSHGLG00000005711	LSM1	100	86.466	Heterocephalus_glaber_female
ENSELUG00000002322	lsm1	100	86.466	ENSHGLG00100017660	LSM1	100	86.466	Heterocephalus_glaber_male
ENSELUG00000002322	lsm1	100	69.173	ENSHGLG00100012152	-	100	69.173	Heterocephalus_glaber_male
ENSELUG00000002322	lsm1	100	92.481	ENSHCOG00000017233	lsm1	100	92.481	Hippocampus_comes
ENSELUG00000002322	lsm1	100	82.707	ENSIPUG00000002312	LSM1	100	82.707	Ictalurus_punctatus
ENSELUG00000002322	lsm1	58	94.805	ENSSTOG00000026870	LSM1	94	94.805	Ictidomys_tridecemlineatus
ENSELUG00000002322	lsm1	100	86.466	ENSJJAG00000014605	-	100	86.466	Jaculus_jaculus
ENSELUG00000002322	lsm1	100	94.737	ENSKMAG00000003016	lsm1	100	94.737	Kryptolebias_marmoratus
ENSELUG00000002322	lsm1	100	93.985	ENSLBEG00000022352	lsm1	100	93.985	Labrus_bergylta
ENSELUG00000002322	lsm1	89	83.051	ENSLACG00000010947	LSM1	98	83.051	Latimeria_chalumnae
ENSELUG00000002322	lsm1	100	87.970	ENSLOCG00000015149	lsm1	100	87.970	Lepisosteus_oculatus
ENSELUG00000002322	lsm1	100	86.466	ENSLAFG00000003534	LSM1	100	86.466	Loxodonta_africana
ENSELUG00000002322	lsm1	100	86.466	ENSMFAG00000032661	LSM1	100	86.466	Macaca_fascicularis
ENSELUG00000002322	lsm1	100	86.466	ENSMLEG00000034535	LSM1	100	86.466	Mandrillus_leucophaeus
ENSELUG00000002322	lsm1	100	93.985	ENSMAMG00000007464	lsm1	100	93.985	Mastacembelus_armatus
ENSELUG00000002322	lsm1	100	95.489	ENSMZEG00005010321	lsm1	100	95.489	Maylandia_zebra
ENSELUG00000002322	lsm1	100	84.962	ENSMGAG00000002125	LSM1	100	84.962	Meleagris_gallopavo
ENSELUG00000002322	lsm1	100	86.466	ENSMICG00000030726	LSM1	100	86.466	Microcebus_murinus
ENSELUG00000002322	lsm1	100	85.714	ENSMOCG00000022817	Lsm1	100	85.714	Microtus_ochrogaster
ENSELUG00000002322	lsm1	100	93.233	ENSMMOG00000015466	lsm1	100	93.233	Mola_mola
ENSELUG00000002322	lsm1	100	85.714	ENSMODG00000010732	-	100	85.714	Monodelphis_domestica
ENSELUG00000002322	lsm1	58	97.403	ENSMALG00000001478	lsm1	82	97.403	Monopterus_albus
ENSELUG00000002322	lsm1	100	85.714	MGP_CAROLIEiJ_G0030930	Lsm1	100	85.714	Mus_caroli
ENSELUG00000002322	lsm1	100	85.714	ENSMUSG00000037296	Lsm1	91	94.872	Mus_musculus
ENSELUG00000002322	lsm1	100	85.714	MGP_PahariEiJ_G0021400	Lsm1	100	85.714	Mus_pahari
ENSELUG00000002322	lsm1	100	85.714	MGP_SPRETEiJ_G0032049	Lsm1	100	85.714	Mus_spretus
ENSELUG00000002322	lsm1	100	87.218	ENSMPUG00000009883	LSM1	100	87.218	Mustela_putorius_furo
ENSELUG00000002322	lsm1	100	86.466	ENSMLUG00000003734	LSM1	100	86.466	Myotis_lucifugus
ENSELUG00000002322	lsm1	100	85.714	ENSNGAG00000003753	Lsm1	100	85.714	Nannospalax_galili
ENSELUG00000002322	lsm1	58	97.403	ENSNBRG00000017370	lsm1	66	97.403	Neolamprologus_brichardi
ENSELUG00000002322	lsm1	100	86.466	ENSNLEG00000029390	LSM1	100	86.466	Nomascus_leucogenys
ENSELUG00000002322	lsm1	100	85.714	ENSMEUG00000014077	LSM1	100	85.714	Notamacropus_eugenii
ENSELUG00000002322	lsm1	88	81.197	ENSOPRG00000000333	LSM1	100	81.197	Ochotona_princeps
ENSELUG00000002322	lsm1	100	86.466	ENSODEG00000004834	LSM1	100	86.466	Octodon_degus
ENSELUG00000002322	lsm1	100	95.489	ENSONIG00000010782	lsm1	100	95.489	Oreochromis_niloticus
ENSELUG00000002322	lsm1	100	85.714	ENSOANG00000003256	LSM1	100	85.714	Ornithorhynchus_anatinus
ENSELUG00000002322	lsm1	100	86.466	ENSOCUG00000015399	LSM1	100	86.466	Oryctolagus_cuniculus
ENSELUG00000002322	lsm1	100	95.489	ENSORLG00000030288	lsm1	100	95.489	Oryzias_latipes
ENSELUG00000002322	lsm1	100	95.489	ENSORLG00020003941	lsm1	100	95.489	Oryzias_latipes_hni
ENSELUG00000002322	lsm1	100	93.985	ENSORLG00020006213	-	86	93.985	Oryzias_latipes_hni
ENSELUG00000002322	lsm1	100	95.489	ENSORLG00015018350	lsm1	100	95.489	Oryzias_latipes_hsok
ENSELUG00000002322	lsm1	100	93.985	ENSOMEG00000012454	lsm1	100	93.985	Oryzias_melastigma
ENSELUG00000002322	lsm1	100	86.466	ENSOGAG00000015161	LSM1	100	86.466	Otolemur_garnettii
ENSELUG00000002322	lsm1	100	86.466	ENSOARG00000001317	LSM1	100	86.466	Ovis_aries
ENSELUG00000002322	lsm1	100	86.466	ENSPPAG00000032279	LSM1	100	86.466	Pan_paniscus
ENSELUG00000002322	lsm1	100	86.466	ENSPPRG00000014172	-	100	86.466	Panthera_pardus
ENSELUG00000002322	lsm1	100	86.466	ENSPTIG00000010289	LSM1	100	86.466	Panthera_tigris_altaica
ENSELUG00000002322	lsm1	100	86.466	ENSPTRG00000020169	LSM1	100	86.466	Pan_troglodytes
ENSELUG00000002322	lsm1	100	86.466	ENSPANG00000008814	LSM1	100	86.466	Papio_anubis
ENSELUG00000002322	lsm1	100	78.947	ENSPKIG00000019409	LSM1	99	78.947	Paramormyrops_kingsleyae
ENSELUG00000002322	lsm1	100	89.474	ENSPKIG00000001839	lsm1	100	89.474	Paramormyrops_kingsleyae
ENSELUG00000002322	lsm1	97	80.620	ENSPSIG00000012563	LSM1	98	80.620	Pelodiscus_sinensis
ENSELUG00000002322	lsm1	58	97.403	ENSPMGG00000022999	lsm1	73	97.403	Periophthalmus_magnuspinnatus
ENSELUG00000002322	lsm1	85	75.221	ENSPMAG00000002671	lsm1	100	75.221	Petromyzon_marinus
ENSELUG00000002322	lsm1	100	84.211	ENSPCIG00000008880	LSM1	100	84.211	Phascolarctos_cinereus
ENSELUG00000002322	lsm1	100	93.233	ENSPFOG00000016029	lsm1	100	93.233	Poecilia_formosa
ENSELUG00000002322	lsm1	100	93.233	ENSPLAG00000007879	lsm1	100	93.233	Poecilia_latipinna
ENSELUG00000002322	lsm1	100	93.233	ENSPMEG00000023550	lsm1	100	93.233	Poecilia_mexicana
ENSELUG00000002322	lsm1	100	93.233	ENSPREG00000009574	lsm1	100	93.233	Poecilia_reticulata
ENSELUG00000002322	lsm1	100	86.466	ENSPPYG00000018521	LSM1	100	86.466	Pongo_abelii
ENSELUG00000002322	lsm1	100	86.466	ENSPCOG00000020901	-	100	86.466	Propithecus_coquereli
ENSELUG00000002322	lsm1	100	86.466	ENSPVAG00000006016	LSM1	100	86.466	Pteropus_vampyrus
ENSELUG00000002322	lsm1	100	95.489	ENSPNYG00000018067	lsm1	100	95.489	Pundamilia_nyererei
ENSELUG00000002322	lsm1	100	83.459	ENSPNAG00000013707	lsm1	100	83.459	Pygocentrus_nattereri
ENSELUG00000002322	lsm1	100	84.962	ENSRNOG00000015375	Lsm1	100	84.962	Rattus_norvegicus
ENSELUG00000002322	lsm1	100	86.466	ENSRBIG00000027449	LSM1	100	86.466	Rhinopithecus_bieti
ENSELUG00000002322	lsm1	100	86.466	ENSRROG00000036074	LSM1	100	86.466	Rhinopithecus_roxellana
ENSELUG00000002322	lsm1	83	43.966	YJL124C	LSM1	67	43.966	Saccharomyces_cerevisiae
ENSELUG00000002322	lsm1	100	85.714	ENSSHAG00000017260	LSM1	100	85.714	Sarcophilus_harrisii
ENSELUG00000002322	lsm1	100	88.722	ENSSFOG00015019528	lsm1	100	88.722	Scleropages_formosus
ENSELUG00000002322	lsm1	100	94.737	ENSSMAG00000004930	lsm1	100	94.737	Scophthalmus_maximus
ENSELUG00000002322	lsm1	100	93.233	ENSSDUG00000021823	lsm1	100	93.233	Seriola_dumerili
ENSELUG00000002322	lsm1	100	93.233	ENSSLDG00000012154	lsm1	100	93.233	Seriola_lalandi_dorsalis
ENSELUG00000002322	lsm1	100	86.466	ENSSPUG00000014878	LSM1	100	86.466	Sphenodon_punctatus
ENSELUG00000002322	lsm1	100	93.985	ENSSPAG00000020548	lsm1	100	93.985	Stegastes_partitus
ENSELUG00000002322	lsm1	100	86.466	ENSSSCG00000039058	LSM1	100	86.466	Sus_scrofa
ENSELUG00000002322	lsm1	100	85.714	ENSTGUG00000004793	LSM1	100	85.714	Taeniopygia_guttata
ENSELUG00000002322	lsm1	100	93.233	ENSTRUG00000025239	lsm1	100	93.233	Takifugu_rubripes
ENSELUG00000002322	lsm1	100	90.977	ENSTNIG00000004055	lsm1	100	90.977	Tetraodon_nigroviridis
ENSELUG00000002322	lsm1	88	83.761	ENSTBEG00000015884	LSM1	100	83.761	Tupaia_belangeri
ENSELUG00000002322	lsm1	100	86.466	ENSTTRG00000004482	LSM1	100	86.466	Tursiops_truncatus
ENSELUG00000002322	lsm1	100	86.466	ENSUAMG00000004103	LSM1	100	86.466	Ursus_americanus
ENSELUG00000002322	lsm1	100	86.466	ENSUMAG00000009132	LSM1	100	86.466	Ursus_maritimus
ENSELUG00000002322	lsm1	58	93.506	ENSVPAG00000011593	LSM1	100	93.506	Vicugna_pacos
ENSELUG00000002322	lsm1	61	66.667	ENSVVUG00000014880	-	86	66.667	Vulpes_vulpes
ENSELUG00000002322	lsm1	100	86.466	ENSVVUG00000020191	LSM1	100	86.466	Vulpes_vulpes
ENSELUG00000002322	lsm1	100	81.022	ENSXETG00000009004	lsm1	100	81.022	Xenopus_tropicalis
ENSELUG00000002322	lsm1	100	92.481	ENSXCOG00000015631	lsm1	100	92.481	Xiphophorus_couchianus
ENSELUG00000002322	lsm1	100	92.481	ENSXMAG00000026637	lsm1	100	92.481	Xiphophorus_maculatus