EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000002409 (Gene tree)
Gene ID: 105012432
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 21587 bases
Position: chrLG10:17579489-17601075
Accession: 105012432
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000026491	PUF	PF00806.19	2.4e-70	1	8
ENSELUP00000026491	PUF	PF00806.19	2.4e-70	2	8
ENSELUP00000026491	PUF	PF00806.19	2.4e-70	3	8
ENSELUP00000026491	PUF	PF00806.19	2.4e-70	4	8
ENSELUP00000026491	PUF	PF00806.19	2.4e-70	5	8
ENSELUP00000026491	PUF	PF00806.19	2.4e-70	6	8
ENSELUP00000026491	PUF	PF00806.19	2.4e-70	7	8
ENSELUP00000026491	PUF	PF00806.19	2.4e-70	8	8
ENSELUP00000026497	PUF	PF00806.19	9.9e-69	1	8
ENSELUP00000026497	PUF	PF00806.19	9.9e-69	2	8
ENSELUP00000026497	PUF	PF00806.19	9.9e-69	3	8
ENSELUP00000026497	PUF	PF00806.19	9.9e-69	4	8
ENSELUP00000026497	PUF	PF00806.19	9.9e-69	5	8
ENSELUP00000026497	PUF	PF00806.19	9.9e-69	6	8
ENSELUP00000026497	PUF	PF00806.19	9.9e-69	7	8
ENSELUP00000026497	PUF	PF00806.19	9.9e-69	8	8
ENSELUP00000000857	PUF	PF00806.19	1e-68	1	8
ENSELUP00000000857	PUF	PF00806.19	1e-68	2	8
ENSELUP00000000857	PUF	PF00806.19	1e-68	3	8
ENSELUP00000000857	PUF	PF00806.19	1e-68	4	8
ENSELUP00000000857	PUF	PF00806.19	1e-68	5	8
ENSELUP00000000857	PUF	PF00806.19	1e-68	6	8
ENSELUP00000000857	PUF	PF00806.19	1e-68	7	8
ENSELUP00000000857	PUF	PF00806.19	1e-68	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000018363	-	6344	-	ENSELUP00000000857	1165 (aa)	-	-
ENSELUT00000018373	-	6338	XM_010873265	ENSELUP00000026497	1163 (aa)	XP_010871567	UPI00057736CE
ENSELUT00000018386	-	2733	-	ENSELUP00000026491	910 (aa)	-	-

Gene Model

Click here to download ENSELUG00000002409's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000002409's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000002409	pum1	94	70.864	ENSELUG00000014997	pum2	94	64.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000002409	pum1	95	93.237	ENSG00000134644	PUM1	100	83.354	Homo_sapiens
ENSELUG00000002409	pum1	100	92.373	ENSAPOG00000021632	pum1	100	96.386	Acanthochromis_polyacanthus
ENSELUG00000002409	pum1	100	83.457	ENSAMEG00000017656	PUM1	97	76.253	Ailuropoda_melanoleuca
ENSELUG00000002409	pum1	100	90.238	ENSACIG00000021013	pum1	100	89.060	Amphilophus_citrinellus
ENSELUG00000002409	pum1	100	92.373	ENSAOCG00000003944	pum1	100	96.386	Amphiprion_ocellaris
ENSELUG00000002409	pum1	100	92.373	ENSAPEG00000014550	pum1	100	96.386	Amphiprion_percula
ENSELUG00000002409	pum1	100	92.373	ENSATEG00000016004	pum1	100	96.386	Anabas_testudineus
ENSELUG00000002409	pum1	100	83.560	ENSAPLG00000009351	PUM1	100	76.398	Anas_platyrhynchos
ENSELUG00000002409	pum1	100	83.002	ENSACAG00000000682	PUM1	98	76.422	Anolis_carolinensis
ENSELUG00000002409	pum1	93	92.995	ENSANAG00000027865	PUM1	100	83.354	Aotus_nancymaae
ENSELUG00000002409	pum1	92	87.418	ENSACLG00000019354	pum1	100	88.920	Astatotilapia_calliptera
ENSELUG00000002409	pum1	100	80.844	ENSAMXG00000020607	pum1	96	82.378	Astyanax_mexicanus
ENSELUG00000002409	pum1	95	93.720	ENSBTAG00000018979	PUM1	100	83.619	Bos_taurus
ENSELUG00000002409	pum1	95	93.237	ENSCJAG00000006035	PUM1	100	83.599	Callithrix_jacchus
ENSELUG00000002409	pum1	100	83.437	ENSCAFG00000011205	PUM1	100	75.352	Canis_familiaris
ENSELUG00000002409	pum1	88	93.237	ENSCAFG00020024616	PUM1	98	84.304	Canis_lupus_dingo
ENSELUG00000002409	pum1	95	93.237	ENSCHIG00000012952	PUM1	100	78.225	Capra_hircus
ENSELUG00000002409	pum1	100	83.560	ENSTSYG00000008868	PUM1	100	84.300	Carlito_syrichta
ENSELUG00000002409	pum1	100	83.292	ENSCPOG00000031613	PUM1	100	83.109	Cavia_porcellus
ENSELUG00000002409	pum1	95	93.720	ENSCATG00000017991	PUM1	100	83.354	Cercocebus_atys
ENSELUG00000002409	pum1	95	92.995	ENSCLAG00000007662	PUM1	100	83.109	Chinchilla_lanigera
ENSELUG00000002409	pum1	100	81.829	ENSCSAG00000001028	PUM1	100	75.224	Chlorocebus_sabaeus
ENSELUG00000002409	pum1	91	69.355	ENSCHOG00000010245	PUM1	93	67.070	Choloepus_hoffmanni
ENSELUG00000002409	pum1	95	93.237	ENSCPBG00000009288	PUM1	100	93.237	Chrysemys_picta_bellii
ENSELUG00000002409	pum1	95	93.237	ENSCANG00000042606	PUM1	100	83.354	Colobus_angolensis_palliatus
ENSELUG00000002409	pum1	100	83.354	ENSCGRG00001024949	Pum1	100	82.966	Cricetulus_griseus_chok1gshd
ENSELUG00000002409	pum1	100	83.354	ENSCGRG00000014197	Pum1	100	82.966	Cricetulus_griseus_crigri
ENSELUG00000002409	pum1	92	87.034	ENSCSEG00000015981	pum1	100	88.454	Cynoglossus_semilaevis
ENSELUG00000002409	pum1	100	92.373	ENSCVAG00000007043	pum1	100	88.396	Cyprinodon_variegatus
ENSELUG00000002409	pum1	100	89.474	ENSDARG00000099256	pum1	100	82.040	Danio_rerio
ENSELUG00000002409	pum1	100	84.054	ENSDNOG00000010939	PUM1	100	76.316	Dasypus_novemcinctus
ENSELUG00000002409	pum1	87	92.995	ENSDORG00000001875	Pum1	100	59.310	Dipodomys_ordii
ENSELUG00000002409	pum1	87	100.000	ENSETEG00000004355	PUM1	87	73.403	Echinops_telfairi
ENSELUG00000002409	pum1	100	83.787	ENSEASG00005010813	PUM1	100	76.543	Equus_asinus_asinus
ENSELUG00000002409	pum1	100	83.787	ENSECAG00000021369	PUM1	100	76.398	Equus_caballus
ENSELUG00000002409	pum1	80	92.222	ENSEEUG00000003871	PUM1	74	92.667	Erinaceus_europaeus
ENSELUG00000002409	pum1	95	93.720	ENSFCAG00000010374	PUM1	100	83.476	Felis_catus
ENSELUG00000002409	pum1	100	83.558	ENSFALG00000001214	PUM1	97	76.128	Ficedula_albicollis
ENSELUG00000002409	pum1	100	83.292	ENSFDAG00000011319	PUM1	100	83.109	Fukomys_damarensis
ENSELUG00000002409	pum1	71	95.463	ENSGMOG00000010491	pum1	100	85.690	Gadus_morhua
ENSELUG00000002409	pum1	93	91.935	ENSGALG00000042598	PUM1	99	91.935	Gallus_gallus
ENSELUG00000002409	pum1	100	91.511	ENSGAFG00000015617	pum1	100	95.904	Gambusia_affinis
ENSELUG00000002409	pum1	99	91.304	ENSGACG00000005717	pum1	100	88.366	Gasterosteus_aculeatus
ENSELUG00000002409	pum1	93	92.137	ENSGAGG00000001290	PUM1	99	92.137	Gopherus_agassizii
ENSELUG00000002409	pum1	95	93.237	ENSGGOG00000011983	PUM1	100	83.354	Gorilla_gorilla
ENSELUG00000002409	pum1	100	92.373	ENSHBUG00000018718	pum1	100	89.164	Haplochromis_burtoni
ENSELUG00000002409	pum1	100	83.292	ENSHGLG00000013819	Pum1	100	82.987	Heterocephalus_glaber_female
ENSELUG00000002409	pum1	100	83.292	ENSHGLG00100008621	Pum1	100	82.987	Heterocephalus_glaber_male
ENSELUG00000002409	pum1	92	83.738	ENSHCOG00000005149	pum1	100	83.955	Hippocampus_comes
ENSELUG00000002409	pum1	100	88.571	ENSIPUG00000020421	pum1	100	81.643	Ictalurus_punctatus
ENSELUG00000002409	pum1	100	83.787	ENSSTOG00000010757	PUM1	100	83.476	Ictidomys_tridecemlineatus
ENSELUG00000002409	pum1	100	83.911	ENSJJAG00000000530	Pum1	100	83.476	Jaculus_jaculus
ENSELUG00000002409	pum1	100	90.678	ENSKMAG00000003481	pum1	100	88.481	Kryptolebias_marmoratus
ENSELUG00000002409	pum1	100	93.220	ENSLBEG00000002527	pum1	100	88.908	Labrus_bergylta
ENSELUG00000002409	pum1	100	80.074	ENSLACG00000017188	PUM1	99	73.645	Latimeria_chalumnae
ENSELUG00000002409	pum1	100	88.089	ENSLOCG00000005210	pum1	99	79.867	Lepisosteus_oculatus
ENSELUG00000002409	pum1	100	82.200	ENSLAFG00000003178	PUM1	100	75.144	Loxodonta_africana
ENSELUG00000002409	pum1	95	93.720	ENSMFAG00000010291	PUM1	100	83.354	Macaca_fascicularis
ENSELUG00000002409	pum1	95	93.237	ENSMMUG00000013520	PUM1	100	83.354	Macaca_mulatta
ENSELUG00000002409	pum1	95	93.237	ENSMNEG00000034639	PUM1	100	83.354	Macaca_nemestrina
ENSELUG00000002409	pum1	95	93.237	ENSMLEG00000038743	PUM1	100	83.354	Mandrillus_leucophaeus
ENSELUG00000002409	pum1	100	93.220	ENSMAMG00000011606	pum1	100	89.164	Mastacembelus_armatus
ENSELUG00000002409	pum1	100	92.373	ENSMZEG00005005834	pum1	100	89.164	Maylandia_zebra
ENSELUG00000002409	pum1	100	83.416	ENSMGAG00000000724	PUM1	100	78.328	Meleagris_gallopavo
ENSELUG00000002409	pum1	100	83.251	ENSMAUG00000022090	Pum1	100	83.436	Mesocricetus_auratus
ENSELUG00000002409	pum1	99	81.908	ENSMICG00000012213	-	100	90.338	Microcebus_murinus
ENSELUG00000002409	pum1	95	93.237	ENSMICG00000007713	-	100	83.354	Microcebus_murinus
ENSELUG00000002409	pum1	100	83.395	ENSMOCG00000015463	Pum1	100	83.088	Microtus_ochrogaster
ENSELUG00000002409	pum1	92	95.663	ENSMMOG00000019817	pum1	77	96.368	Mola_mola
ENSELUG00000002409	pum1	100	82.324	ENSMODG00000017067	PUM1	100	75.802	Monodelphis_domestica
ENSELUG00000002409	pum1	85	96.145	ENSMALG00000016399	pum1	100	96.386	Monopterus_albus
ENSELUG00000002409	pum1	100	83.002	MGP_CAROLIEiJ_G0026549	Pum1	100	82.864	Mus_caroli
ENSELUG00000002409	pum1	100	83.127	ENSMUSG00000028580	Pum1	100	82.987	Mus_musculus
ENSELUG00000002409	pum1	100	83.127	MGP_PahariEiJ_G0028881	Pum1	100	82.987	Mus_pahari
ENSELUG00000002409	pum1	100	83.127	MGP_SPRETEiJ_G0027529	Pum1	100	83.109	Mus_spretus
ENSELUG00000002409	pum1	100	83.292	ENSMPUG00000015454	PUM1	100	76.214	Mustela_putorius_furo
ENSELUG00000002409	pum1	100	84.387	ENSMLUG00000006490	PUM1	100	76.069	Myotis_lucifugus
ENSELUG00000002409	pum1	100	83.787	ENSNGAG00000002378	Pum1	100	83.476	Nannospalax_galili
ENSELUG00000002409	pum1	100	89.201	ENSNBRG00000010689	pum1	100	91.698	Neolamprologus_brichardi
ENSELUG00000002409	pum1	95	90.097	ENSNLEG00000001151	PUM1	100	90.097	Nomascus_leucogenys
ENSELUG00000002409	pum1	75	90.909	ENSMEUG00000000976	-	69	81.769	Notamacropus_eugenii
ENSELUG00000002409	pum1	83	91.085	ENSOPRG00000001776	PUM1	75	89.720	Ochotona_princeps
ENSELUG00000002409	pum1	100	83.292	ENSODEG00000003465	PUM1	100	83.109	Octodon_degus
ENSELUG00000002409	pum1	100	92.373	ENSONIG00000002290	pum1	100	89.420	Oreochromis_niloticus
ENSELUG00000002409	pum1	83	67.909	ENSOANG00000004902	-	100	63.200	Ornithorhynchus_anatinus
ENSELUG00000002409	pum1	99	83.975	ENSOCUG00000008641	PUM1	99	76.277	Oryctolagus_cuniculus
ENSELUG00000002409	pum1	100	91.525	ENSORLG00000011482	pum1	100	88.180	Oryzias_latipes
ENSELUG00000002409	pum1	100	91.525	ENSORLG00020019461	pum1	100	88.265	Oryzias_latipes_hni
ENSELUG00000002409	pum1	100	90.678	ENSORLG00015011375	pum1	100	88.180	Oryzias_latipes_hsok
ENSELUG00000002409	pum1	92	97.590	ENSOMEG00000009312	pum1	100	95.663	Oryzias_melastigma
ENSELUG00000002409	pum1	100	79.408	ENSOGAG00000011063	PUM1	100	73.459	Otolemur_garnettii
ENSELUG00000002409	pum1	95	93.237	ENSOARG00000001899	PUM1	100	75.493	Ovis_aries
ENSELUG00000002409	pum1	95	93.237	ENSPPAG00000044003	PUM1	100	83.354	Pan_paniscus
ENSELUG00000002409	pum1	100	83.767	ENSPPRG00000001370	PUM1	100	83.476	Panthera_pardus
ENSELUG00000002409	pum1	100	83.519	ENSPTIG00000010798	PUM1	100	83.843	Panthera_tigris_altaica
ENSELUG00000002409	pum1	95	93.237	ENSPTRG00000000453	PUM1	100	83.354	Pan_troglodytes
ENSELUG00000002409	pum1	95	93.720	ENSPANG00000016338	PUM1	100	83.354	Papio_anubis
ENSELUG00000002409	pum1	95	94.686	ENSPKIG00000010578	pum1	100	81.346	Paramormyrops_kingsleyae
ENSELUG00000002409	pum1	100	83.767	ENSPSIG00000014118	PUM1	100	76.379	Pelodiscus_sinensis
ENSELUG00000002409	pum1	100	88.203	ENSPMGG00000005836	pum1	100	93.220	Periophthalmus_magnuspinnatus
ENSELUG00000002409	pum1	100	83.251	ENSPEMG00000010009	Pum1	100	83.436	Peromyscus_maniculatus_bairdii
ENSELUG00000002409	pum1	95	92.995	ENSPCIG00000014151	PUM1	100	92.995	Phascolarctos_cinereus
ENSELUG00000002409	pum1	94	96.667	ENSPFOG00000007289	pum1	99	91.525	Poecilia_formosa
ENSELUG00000002409	pum1	100	91.261	ENSPLAG00000007256	pum1	100	88.574	Poecilia_latipinna
ENSELUG00000002409	pum1	92	96.875	ENSPMEG00000019543	pum1	99	87.963	Poecilia_mexicana
ENSELUG00000002409	pum1	100	90.678	ENSPREG00000005195	pum1	100	90.678	Poecilia_reticulata
ENSELUG00000002409	pum1	100	83.540	ENSPPYG00000001621	PUM1	100	74.818	Pongo_abelii
ENSELUG00000002409	pum1	81	92.284	ENSPCAG00000001979	PUM1	73	92.901	Procavia_capensis
ENSELUG00000002409	pum1	95	93.237	ENSPCOG00000004398	PUM1	100	83.354	Propithecus_coquereli
ENSELUG00000002409	pum1	100	80.817	ENSPVAG00000005207	PUM1	97	74.382	Pteropus_vampyrus
ENSELUG00000002409	pum1	100	92.373	ENSPNYG00000009518	pum1	100	89.164	Pundamilia_nyererei
ENSELUG00000002409	pum1	100	86.951	ENSPNAG00000026728	pum1	99	83.902	Pygocentrus_nattereri
ENSELUG00000002409	pum1	100	83.623	ENSRNOG00000011709	Pum1	100	76.132	Rattus_norvegicus
ENSELUG00000002409	pum1	95	93.720	ENSRBIG00000042521	PUM1	100	83.354	Rhinopithecus_bieti
ENSELUG00000002409	pum1	95	93.237	ENSRROG00000020156	PUM1	100	83.354	Rhinopithecus_roxellana
ENSELUG00000002409	pum1	95	93.237	ENSSBOG00000032037	PUM1	100	83.476	Saimiri_boliviensis_boliviensis
ENSELUG00000002409	pum1	100	82.447	ENSSHAG00000010918	PUM1	100	75.885	Sarcophilus_harrisii
ENSELUG00000002409	pum1	100	94.068	ENSSMAG00000010918	pum1	100	96.386	Scophthalmus_maximus
ENSELUG00000002409	pum1	100	93.220	ENSSDUG00000009021	pum1	100	89.590	Seriola_dumerili
ENSELUG00000002409	pum1	100	93.220	ENSSLDG00000009667	pum1	100	89.518	Seriola_lalandi_dorsalis
ENSELUG00000002409	pum1	97	83.718	ENSSARG00000003055	PUM1	88	81.515	Sorex_araneus
ENSELUG00000002409	pum1	100	83.416	ENSSPUG00000006267	PUM1	100	76.296	Sphenodon_punctatus
ENSELUG00000002409	pum1	100	92.373	ENSSPAG00000016636	pum1	100	96.386	Stegastes_partitus
ENSELUG00000002409	pum1	100	91.734	ENSSSCG00000003591	PUM1	95	91.734	Sus_scrofa
ENSELUG00000002409	pum1	100	92.373	ENSTRUG00000013121	pum1	100	92.467	Takifugu_rubripes
ENSELUG00000002409	pum1	100	89.277	ENSTNIG00000016983	pum1	99	89.134	Tetraodon_nigroviridis
ENSELUG00000002409	pum1	87	87.805	ENSTBEG00000013810	PUM1	89	87.805	Tupaia_belangeri
ENSELUG00000002409	pum1	91	92.105	ENSTTRG00000007436	PUM1	88	78.681	Tursiops_truncatus
ENSELUG00000002409	pum1	98	82.621	ENSUAMG00000018262	-	100	74.797	Ursus_americanus
ENSELUG00000002409	pum1	95	93.720	ENSUMAG00000009211	PUM1	100	59.462	Ursus_maritimus
ENSELUG00000002409	pum1	100	83.911	ENSVPAG00000005902	PUM1	92	84.088	Vicugna_pacos
ENSELUG00000002409	pum1	95	93.720	ENSVVUG00000014631	PUM1	100	78.247	Vulpes_vulpes
ENSELUG00000002409	pum1	100	79.084	ENSXETG00000012904	pum1	99	72.391	Xenopus_tropicalis
ENSELUG00000002409	pum1	100	89.831	ENSXMAG00000002945	pum1	100	88.365	Xiphophorus_maculatus