EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000002886 (Gene tree)
Gene ID: 105014801
Gene Symbol: sbno1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 18004 bases
Position: chrLG14:6342593-6360596
Accession: 105014801
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000026821	ResIII	PF04851.15	1.4e-07	1	1
ENSELUP00000026854	ResIII	PF04851.15	1.4e-07	1	1
ENSELUP00000001353	ResIII	PF04851.15	1.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000017572	-	4110	-	ENSELUP00000001328	1369 (aa)	-	-
ENSELUT00000017545	-	6788	XM_010877401	ENSELUP00000026821	1415 (aa)	XP_010875703	UPI000576971A
ENSELUT00000017486	-	7212	XM_010877399	ENSELUP00000026854	1415 (aa)	XP_010875701	UPI000576971A
ENSELUT00000017513	-	7173	XM_010877403	ENSELUP00000001353	1402 (aa)	XP_010875705	UPI0005763D88

Gene Model

Click here to download ENSELUG00000002886's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000002886's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000002886	sbno1	75	58.480	ENSELUG00000020457	si:ch73-63e15.2	64	64.172

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000002886	sbno1	99	77.778	ENSG00000139697	SBNO1	99	77.707	Homo_sapiens
ENSELUG00000002886	sbno1	82	87.348	ENSAPOG00000003196	sbno1	98	87.608	Acanthochromis_polyacanthus
ENSELUG00000002886	sbno1	99	77.825	ENSAMEG00000015151	SBNO1	99	77.754	Ailuropoda_melanoleuca
ENSELUG00000002886	sbno1	99	80.409	ENSACIG00000008088	sbno1	99	80.761	Amphilophus_citrinellus
ENSELUG00000002886	sbno1	99	82.896	ENSAOCG00000014859	sbno1	99	83.109	Amphiprion_ocellaris
ENSELUG00000002886	sbno1	99	82.825	ENSAPEG00000006069	sbno1	99	83.038	Amphiprion_percula
ENSELUG00000002886	sbno1	99	84.158	ENSATEG00000006667	sbno1	100	84.158	Anabas_testudineus
ENSELUG00000002886	sbno1	98	78.320	ENSAPLG00000015674	SBNO1	99	78.224	Anas_platyrhynchos
ENSELUG00000002886	sbno1	98	78.255	ENSACAG00000015441	SBNO1	88	78.020	Anolis_carolinensis
ENSELUG00000002886	sbno1	94	86.933	ENSANAG00000029958	-	99	86.486	Aotus_nancymaae
ENSELUG00000002886	sbno1	99	78.663	ENSACLG00000024913	sbno1	100	77.580	Astatotilapia_calliptera
ENSELUG00000002886	sbno1	99	85.319	ENSAMXG00000019473	sbno1	100	85.957	Astyanax_mexicanus
ENSELUG00000002886	sbno1	100	78.116	ENSBTAG00000020505	SBNO1	100	78.045	Bos_taurus
ENSELUG00000002886	sbno1	99	78.059	ENSCJAG00000016599	SBNO1	99	77.989	Callithrix_jacchus
ENSELUG00000002886	sbno1	99	77.949	ENSCAFG00000007503	SBNO1	97	88.294	Canis_familiaris
ENSELUG00000002886	sbno1	95	84.865	ENSCAFG00020015363	SBNO1	99	84.865	Canis_lupus_dingo
ENSELUG00000002886	sbno1	95	86.691	ENSCHIG00000008382	SBNO1	99	86.691	Capra_hircus
ENSELUG00000002886	sbno1	99	78.059	ENSTSYG00000012749	SBNO1	99	80.651	Carlito_syrichta
ENSELUG00000002886	sbno1	91	86.667	ENSCAPG00000000384	SBNO1	99	86.667	Cavia_aperea
ENSELUG00000002886	sbno1	95	86.667	ENSCPOG00000008109	SBNO1	99	86.667	Cavia_porcellus
ENSELUG00000002886	sbno1	99	73.725	ENSCCAG00000035316	SBNO1	99	75.540	Cebus_capucinus
ENSELUG00000002886	sbno1	93	86.715	ENSCATG00000008239	SBNO1	99	86.715	Cercocebus_atys
ENSELUG00000002886	sbno1	95	86.667	ENSCLAG00000008995	SBNO1	99	86.667	Chinchilla_lanigera
ENSELUG00000002886	sbno1	82	84.021	ENSCSAG00000002064	SBNO1	99	84.021	Chlorocebus_sabaeus
ENSELUG00000002886	sbno1	96	74.251	ENSCHOG00000008814	SBNO1	96	74.251	Choloepus_hoffmanni
ENSELUG00000002886	sbno1	98	78.540	ENSCPBG00000025968	SBNO1	99	78.156	Chrysemys_picta_bellii
ENSELUG00000002886	sbno1	99	74.314	ENSCANG00000042688	-	99	74.173	Colobus_angolensis_palliatus
ENSELUG00000002886	sbno1	95	85.612	ENSCGRG00001017470	Sbno1	99	85.612	Cricetulus_griseus_chok1gshd
ENSELUG00000002886	sbno1	95	85.612	ENSCGRG00000004756	Sbno1	99	85.612	Cricetulus_griseus_crigri
ENSELUG00000002886	sbno1	99	81.857	ENSCSEG00000011919	sbno1	100	82.908	Cynoglossus_semilaevis
ENSELUG00000002886	sbno1	99	82.790	ENSCVAG00000007038	sbno1	100	83.003	Cyprinodon_variegatus
ENSELUG00000002886	sbno1	99	84.687	ENSDARG00000099080	sbno1	99	85.114	Danio_rerio
ENSELUG00000002886	sbno1	99	81.143	ENSDNOG00000017147	SBNO1	96	81.143	Dasypus_novemcinctus
ENSELUG00000002886	sbno1	99	73.629	ENSDORG00000015261	Sbno1	99	73.540	Dipodomys_ordii
ENSELUG00000002886	sbno1	93	75.472	ENSETEG00000005620	SBNO1	93	75.472	Echinops_telfairi
ENSELUG00000002886	sbno1	75	61.781	ENSEBUG00000013823	sbno1	93	61.460	Eptatretus_burgeri
ENSELUG00000002886	sbno1	51	75.589	ENSEASG00005012595	-	92	75.346	Equus_asinus_asinus
ENSELUG00000002886	sbno1	99	77.989	ENSECAG00000006127	SBNO1	98	79.364	Equus_caballus
ENSELUG00000002886	sbno1	82	83.060	ENSEEUG00000003793	SBNO1	82	83.060	Erinaceus_europaeus
ENSELUG00000002886	sbno1	99	78.129	ENSFCAG00000015331	SBNO1	99	78.059	Felis_catus
ENSELUG00000002886	sbno1	98	78.105	ENSFALG00000009273	SBNO1	99	78.224	Ficedula_albicollis
ENSELUG00000002886	sbno1	95	83.877	ENSFDAG00000014232	SBNO1	99	82.709	Fukomys_damarensis
ENSELUG00000002886	sbno1	99	82.649	ENSFHEG00000007360	sbno1	100	82.578	Fundulus_heteroclitus
ENSELUG00000002886	sbno1	95	83.772	ENSGMOG00000018229	sbno1	99	83.859	Gadus_morhua
ENSELUG00000002886	sbno1	89	77.147	ENSGALG00000003392	SBNO1	99	78.025	Gallus_gallus
ENSELUG00000002886	sbno1	99	82.849	ENSGAFG00000003960	sbno1	100	82.991	Gambusia_affinis
ENSELUG00000002886	sbno1	95	82.759	ENSGACG00000015633	sbno1	99	82.485	Gasterosteus_aculeatus
ENSELUG00000002886	sbno1	96	87.713	ENSGAGG00000001065	SBNO1	99	86.871	Gopherus_agassizii
ENSELUG00000002886	sbno1	95	86.847	ENSGGOG00000015000	SBNO1	99	86.847	Gorilla_gorilla
ENSELUG00000002886	sbno1	99	72.747	ENSHBUG00000011910	sbno1	100	71.662	Haplochromis_burtoni
ENSELUG00000002886	sbno1	94	87.114	ENSHGLG00000014165	-	99	77.598	Heterocephalus_glaber_female
ENSELUG00000002886	sbno1	92	86.100	ENSHCOG00000003246	sbno1	95	86.100	Hippocampus_comes
ENSELUG00000002886	sbno1	99	85.674	ENSIPUG00000015830	Sbno1	98	86.170	Ictalurus_punctatus
ENSELUG00000002886	sbno1	95	86.847	ENSSTOG00000023221	SBNO1	99	86.847	Ictidomys_tridecemlineatus
ENSELUG00000002886	sbno1	95	82.703	ENSJJAG00000001741	Sbno1	99	82.703	Jaculus_jaculus
ENSELUG00000002886	sbno1	99	83.191	ENSKMAG00000009696	sbno1	99	83.724	Kryptolebias_marmoratus
ENSELUG00000002886	sbno1	99	83.534	ENSLBEG00000007623	sbno1	100	83.828	Labrus_bergylta
ENSELUG00000002886	sbno1	100	74.160	ENSLACG00000017227	SBNO1	100	75.789	Latimeria_chalumnae
ENSELUG00000002886	sbno1	100	84.096	ENSLOCG00000005725	sbno1	98	83.955	Lepisosteus_oculatus
ENSELUG00000002886	sbno1	99	77.426	ENSLAFG00000002135	SBNO1	99	77.356	Loxodonta_africana
ENSELUG00000002886	sbno1	95	83.601	ENSMFAG00000031429	SBNO1	99	83.601	Macaca_fascicularis
ENSELUG00000002886	sbno1	95	83.601	ENSMMUG00000011496	SBNO1	99	83.601	Macaca_mulatta
ENSELUG00000002886	sbno1	95	86.847	ENSMLEG00000033260	SBNO1	99	86.847	Mandrillus_leucophaeus
ENSELUG00000002886	sbno1	99	83.380	ENSMAMG00000005473	sbno1	100	83.487	Mastacembelus_armatus
ENSELUG00000002886	sbno1	98	78.505	ENSMGAG00000003274	SBNO1	99	78.405	Meleagris_gallopavo
ENSELUG00000002886	sbno1	50	75.823	ENSMAUG00000004834	-	98	75.931	Mesocricetus_auratus
ENSELUG00000002886	sbno1	94	84.029	ENSMICG00000006573	-	99	83.604	Microcebus_murinus
ENSELUG00000002886	sbno1	95	85.971	ENSMOCG00000009390	Sbno1	99	85.971	Microtus_ochrogaster
ENSELUG00000002886	sbno1	99	77.557	ENSMMOG00000008691	sbno1	99	78.298	Mola_mola
ENSELUG00000002886	sbno1	99	78.114	ENSMODG00000012470	SBNO1	98	77.817	Monodelphis_domestica
ENSELUG00000002886	sbno1	99	83.522	ENSMALG00000001056	sbno1	100	83.239	Monopterus_albus
ENSELUG00000002886	sbno1	99	77.817	MGP_CAROLIEiJ_G0027749	Sbno1	95	90.789	Mus_caroli
ENSELUG00000002886	sbno1	99	77.887	ENSMUSG00000038095	Sbno1	94	90.789	Mus_musculus
ENSELUG00000002886	sbno1	99	78.138	MGP_PahariEiJ_G0024329	Sbno1	95	90.789	Mus_pahari
ENSELUG00000002886	sbno1	99	77.958	MGP_SPRETEiJ_G0028747	Sbno1	95	90.789	Mus_spretus
ENSELUG00000002886	sbno1	99	78.129	ENSMPUG00000001658	SBNO1	99	78.044	Mustela_putorius_furo
ENSELUG00000002886	sbno1	99	77.778	ENSMLUG00000017159	SBNO1	99	77.707	Myotis_lucifugus
ENSELUG00000002886	sbno1	92	88.039	ENSNGAG00000012620	Sbno1	98	88.039	Nannospalax_galili
ENSELUG00000002886	sbno1	99	78.734	ENSNBRG00000019189	sbno1	100	78.078	Neolamprologus_brichardi
ENSELUG00000002886	sbno1	99	74.947	ENSNLEG00000001502	SBNO1	98	82.975	Nomascus_leucogenys
ENSELUG00000002886	sbno1	61	76.812	ENSMEUG00000008768	-	91	76.812	Notamacropus_eugenii
ENSELUG00000002886	sbno1	99	76.632	ENSOPRG00000011054	SBNO1	99	76.528	Ochotona_princeps
ENSELUG00000002886	sbno1	95	86.667	ENSODEG00000009997	SBNO1	99	86.667	Octodon_degus
ENSELUG00000002886	sbno1	99	81.953	ENSONIG00000015348	sbno1	100	81.657	Oreochromis_niloticus
ENSELUG00000002886	sbno1	100	76.073	ENSOCUG00000002441	SBNO1	94	77.028	Oryctolagus_cuniculus
ENSELUG00000002886	sbno1	99	82.873	ENSORLG00000001593	sbno1	100	82.566	Oryzias_latipes
ENSELUG00000002886	sbno1	99	83.215	ENSORLG00020015216	sbno1	100	82.566	Oryzias_latipes_hni
ENSELUG00000002886	sbno1	99	83.003	ENSORLG00015002726	sbno1	100	82.424	Oryzias_latipes_hsok
ENSELUG00000002886	sbno1	99	83.321	ENSOMEG00000019313	sbno1	99	82.798	Oryzias_melastigma
ENSELUG00000002886	sbno1	50	73.932	ENSOGAG00000010781	-	98	73.932	Otolemur_garnettii
ENSELUG00000002886	sbno1	100	77.949	ENSOARG00000004404	SBNO1	100	77.879	Ovis_aries
ENSELUG00000002886	sbno1	95	86.847	ENSPPAG00000024635	SBNO1	99	86.847	Pan_paniscus
ENSELUG00000002886	sbno1	99	78.129	ENSPPRG00000022092	SBNO1	99	78.059	Panthera_pardus
ENSELUG00000002886	sbno1	99	78.154	ENSPTIG00000017803	SBNO1	99	78.224	Panthera_tigris_altaica
ENSELUG00000002886	sbno1	95	86.847	ENSPTRG00000005597	SBNO1	99	86.847	Pan_troglodytes
ENSELUG00000002886	sbno1	95	86.847	ENSPANG00000011640	SBNO1	99	86.847	Papio_anubis
ENSELUG00000002886	sbno1	99	83.427	ENSPKIG00000001441	sbno1	100	83.980	Paramormyrops_kingsleyae
ENSELUG00000002886	sbno1	98	78.396	ENSPSIG00000009572	-	99	78.369	Pelodiscus_sinensis
ENSELUG00000002886	sbno1	92	74.334	ENSPSIG00000009256	-	100	74.257	Pelodiscus_sinensis
ENSELUG00000002886	sbno1	95	86.151	ENSPEMG00000016087	Sbno1	99	86.151	Peromyscus_maniculatus_bairdii
ENSELUG00000002886	sbno1	99	78.156	ENSPCIG00000010985	SBNO1	99	77.857	Phascolarctos_cinereus
ENSELUG00000002886	sbno1	99	83.203	ENSPFOG00000005069	sbno1	100	83.416	Poecilia_formosa
ENSELUG00000002886	sbno1	99	83.062	ENSPLAG00000015015	sbno1	100	83.274	Poecilia_latipinna
ENSELUG00000002886	sbno1	99	83.144	ENSPMEG00000021212	sbno1	100	83.357	Poecilia_mexicana
ENSELUG00000002886	sbno1	99	82.790	ENSPREG00000017746	sbno1	99	86.391	Poecilia_reticulata
ENSELUG00000002886	sbno1	99	77.535	ENSPPYG00000005084	SBNO1	99	77.465	Pongo_abelii
ENSELUG00000002886	sbno1	88	70.651	ENSPCAG00000008634	SBNO1	88	70.430	Procavia_capensis
ENSELUG00000002886	sbno1	97	86.885	ENSPCOG00000024277	SBNO1	99	86.885	Propithecus_coquereli
ENSELUG00000002886	sbno1	87	87.078	ENSPVAG00000015304	SBNO1	87	87.078	Pteropus_vampyrus
ENSELUG00000002886	sbno1	99	81.883	ENSPNYG00000004291	sbno1	100	81.161	Pundamilia_nyererei
ENSELUG00000002886	sbno1	99	84.823	ENSPNAG00000015622	sbno1	100	84.894	Pygocentrus_nattereri
ENSELUG00000002886	sbno1	95	86.331	ENSRNOG00000001064	Sbno1	99	86.486	Rattus_norvegicus
ENSELUG00000002886	sbno1	95	86.847	ENSRROG00000034230	SBNO1	99	86.847	Rhinopithecus_roxellana
ENSELUG00000002886	sbno1	96	75.870	ENSSBOG00000015422	SBNO1	98	75.722	Saimiri_boliviensis_boliviensis
ENSELUG00000002886	sbno1	99	83.709	ENSSFOG00015019025	sbno1	100	83.357	Scleropages_formosus
ENSELUG00000002886	sbno1	99	83.593	ENSSMAG00000013640	sbno1	100	83.770	Scophthalmus_maximus
ENSELUG00000002886	sbno1	99	84.300	ENSSDUG00000023480	sbno1	97	88.338	Seriola_dumerili
ENSELUG00000002886	sbno1	99	84.300	ENSSLDG00000007928	sbno1	98	88.164	Seriola_lalandi_dorsalis
ENSELUG00000002886	sbno1	88	84.474	ENSSARG00000002594	SBNO1	88	84.474	Sorex_araneus
ENSELUG00000002886	sbno1	98	78.236	ENSSPUG00000012640	SBNO1	99	77.857	Sphenodon_punctatus
ENSELUG00000002886	sbno1	99	83.876	ENSSPAG00000016244	sbno1	100	84.017	Stegastes_partitus
ENSELUG00000002886	sbno1	99	78.030	ENSSSCG00000009776	SBNO1	99	77.959	Sus_scrofa
ENSELUG00000002886	sbno1	98	78.033	ENSTGUG00000005380	SBNO1	99	78.154	Taeniopygia_guttata
ENSELUG00000002886	sbno1	99	81.586	ENSTRUG00000018490	sbno1	99	80.581	Takifugu_rubripes
ENSELUG00000002886	sbno1	57	78.315	ENSTNIG00000013506	sbno1	99	79.349	Tetraodon_nigroviridis
ENSELUG00000002886	sbno1	99	78.059	ENSUAMG00000019671	SBNO1	99	77.989	Ursus_americanus
ENSELUG00000002886	sbno1	99	78.059	ENSUMAG00000004002	SBNO1	99	77.989	Ursus_maritimus
ENSELUG00000002886	sbno1	95	73.333	ENSVPAG00000007024	SBNO1	92	72.824	Vicugna_pacos
ENSELUG00000002886	sbno1	99	78.059	ENSVVUG00000027807	SBNO1	99	77.989	Vulpes_vulpes
ENSELUG00000002886	sbno1	99	74.789	ENSXETG00000031930	SBNO1	92	82.348	Xenopus_tropicalis
ENSELUG00000002886	sbno1	88	81.401	ENSXCOG00000011607	sbno1	99	78.154	Xiphophorus_couchianus
ENSELUG00000002886	sbno1	99	83.003	ENSXMAG00000002140	sbno1	100	83.215	Xiphophorus_maculatus