EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000003121 (Gene tree)
Gene ID: 105020274
Gene Symbol: RUXF
Alias: Sm-F
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 2168 bases
Position: chrLG23:10862471-10864638
Accession: 105020274
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000001690	LSM	PF01423.22	2.3e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000016976	-	520	XM_010887159	ENSELUP00000001690	86 (aa)	XP_010885461	C1BXD8

Gene Model

Click here to download ENSELUG00000003121's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000003121's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000003121	RUXF	100	96.512	ENSELUG00000007737	RUXF	99	96.512
ENSELUG00000003121	RUXF	77	48.485	ENSELUG00000014301	LSM6	83	48.485

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000003121	RUXF	87	94.667	ENSG00000139343	SNRPF	87	94.667	Homo_sapiens
ENSELUG00000003121	RUXF	99	97.647	ENSAPOG00000003377	snrpf	66	97.647	Acanthochromis_polyacanthus
ENSELUG00000003121	RUXF	86	94.595	ENSAMEG00000002166	-	87	94.595	Ailuropoda_melanoleuca
ENSELUG00000003121	RUXF	88	81.579	ENSAMEG00000018718	-	87	82.667	Ailuropoda_melanoleuca
ENSELUG00000003121	RUXF	98	97.619	ENSACIG00000013216	snrpf	99	97.619	Amphilophus_citrinellus
ENSELUG00000003121	RUXF	98	97.619	ENSAOCG00000015108	snrpf	99	97.619	Amphiprion_ocellaris
ENSELUG00000003121	RUXF	98	97.619	ENSAPEG00000022022	snrpf	99	97.619	Amphiprion_percula
ENSELUG00000003121	RUXF	98	97.619	ENSATEG00000022625	snrpf	90	97.619	Anabas_testudineus
ENSELUG00000003121	RUXF	86	93.243	ENSACAG00000014073	SNRPF	85	93.243	Anolis_carolinensis
ENSELUG00000003121	RUXF	83	88.732	ENSANAG00000020297	-	65	88.732	Aotus_nancymaae
ENSELUG00000003121	RUXF	87	66.667	ENSANAG00000025860	-	85	66.667	Aotus_nancymaae
ENSELUG00000003121	RUXF	87	94.667	ENSANAG00000032845	SNRPF	87	94.667	Aotus_nancymaae
ENSELUG00000003121	RUXF	98	97.619	ENSACLG00000016066	snrpf	99	97.619	Astatotilapia_calliptera
ENSELUG00000003121	RUXF	100	97.674	ENSAMXG00000007421	snrpf	100	97.674	Astyanax_mexicanus
ENSELUG00000003121	RUXF	87	94.667	ENSBTAG00000016271	SNRPF	87	94.667	Bos_taurus
ENSELUG00000003121	RUXF	91	89.744	ENSBTAG00000050012	-	93	89.333	Bos_taurus
ENSELUG00000003121	RUXF	90	71.429	WBGene00004918	snr-5	85	73.611	Caenorhabditis_elegans
ENSELUG00000003121	RUXF	87	94.667	ENSCJAG00000002705	-	87	94.667	Callithrix_jacchus
ENSELUG00000003121	RUXF	87	94.667	ENSCAFG00000006395	-	68	94.667	Canis_familiaris
ENSELUG00000003121	RUXF	85	86.301	ENSCAFG00000031151	-	85	89.041	Canis_familiaris
ENSELUG00000003121	RUXF	85	86.301	ENSCAFG00020010823	-	85	89.041	Canis_lupus_dingo
ENSELUG00000003121	RUXF	91	83.333	ENSCAFG00020013161	-	74	91.429	Canis_lupus_dingo
ENSELUG00000003121	RUXF	94	88.889	ENSTSYG00000031636	-	61	90.411	Carlito_syrichta
ENSELUG00000003121	RUXF	87	81.333	ENSTSYG00000030635	-	87	81.333	Carlito_syrichta
ENSELUG00000003121	RUXF	87	89.474	ENSTSYG00000036502	-	87	89.474	Carlito_syrichta
ENSELUG00000003121	RUXF	86	94.595	ENSCAPG00000007242	SNRPF	87	94.595	Cavia_aperea
ENSELUG00000003121	RUXF	87	94.667	ENSCPOG00000013898	SNRPF	87	94.667	Cavia_porcellus
ENSELUG00000003121	RUXF	100	83.721	ENSCCAG00000033627	-	59	84.000	Cebus_capucinus
ENSELUG00000003121	RUXF	100	94.186	ENSCCAG00000017356	-	87	94.667	Cebus_capucinus
ENSELUG00000003121	RUXF	87	94.667	ENSCCAG00000037378	-	87	94.667	Cebus_capucinus
ENSELUG00000003121	RUXF	87	94.667	ENSCLAG00000007200	SNRPF	87	94.667	Chinchilla_lanigera
ENSELUG00000003121	RUXF	87	94.667	ENSCSAG00000003602	-	61	94.667	Chlorocebus_sabaeus
ENSELUG00000003121	RUXF	74	93.750	ENSCHOG00000009392	SNRPF	100	93.750	Choloepus_hoffmanni
ENSELUG00000003121	RUXF	100	83.721	ENSCPBG00000001985	-	89	85.333	Chrysemys_picta_bellii
ENSELUG00000003121	RUXF	87	86.667	ENSCPBG00000006227	-	87	86.667	Chrysemys_picta_bellii
ENSELUG00000003121	RUXF	99	89.412	ENSCPBG00000024287	-	60	90.541	Chrysemys_picta_bellii
ENSELUG00000003121	RUXF	100	88.372	ENSCPBG00000026463	-	87	89.333	Chrysemys_picta_bellii
ENSELUG00000003121	RUXF	99	84.706	ENSCSAVG00000007498	-	84	86.486	Ciona_savignyi
ENSELUG00000003121	RUXF	87	94.667	ENSCGRG00001017100	-	87	94.667	Cricetulus_griseus_chok1gshd
ENSELUG00000003121	RUXF	87	89.333	ENSCGRG00001008965	-	58	89.333	Cricetulus_griseus_chok1gshd
ENSELUG00000003121	RUXF	93	90.000	ENSCGRG00000018878	-	94	89.333	Cricetulus_griseus_crigri
ENSELUG00000003121	RUXF	87	94.667	ENSCGRG00000000336	-	87	94.667	Cricetulus_griseus_crigri
ENSELUG00000003121	RUXF	100	96.512	ENSCSEG00000004748	snrpf	100	96.512	Cynoglossus_semilaevis
ENSELUG00000003121	RUXF	99	97.647	ENSCVAG00000000397	snrpf	67	97.647	Cyprinodon_variegatus
ENSELUG00000003121	RUXF	100	95.455	ENSDARG00000105037	snrpf	100	95.455	Danio_rerio
ENSELUG00000003121	RUXF	87	93.333	ENSDNOG00000048989	-	67	93.333	Dasypus_novemcinctus
ENSELUG00000003121	RUXF	87	78.667	ENSDNOG00000049373	-	65	78.667	Dasypus_novemcinctus
ENSELUG00000003121	RUXF	69	91.525	ENSDORG00000029740	-	72	91.525	Dipodomys_ordii
ENSELUG00000003121	RUXF	84	86.111	ENSDORG00000025351	-	100	86.111	Dipodomys_ordii
ENSELUG00000003121	RUXF	98	75.000	FBgn0000426	SmF	83	78.082	Drosophila_melanogaster
ENSELUG00000003121	RUXF	87	94.667	ENSETEG00000001558	-	87	94.667	Echinops_telfairi
ENSELUG00000003121	RUXF	95	75.610	ENSEBUG00000001793	-	72	86.567	Eptatretus_burgeri
ENSELUG00000003121	RUXF	87	94.667	ENSECAG00000019817	SNRPF	61	94.667	Equus_caballus
ENSELUG00000003121	RUXF	86	94.595	ENSEEUG00000013509	SNRPF	87	94.595	Erinaceus_europaeus
ENSELUG00000003121	RUXF	98	75.000	ENSFCAG00000031148	-	72	73.077	Felis_catus
ENSELUG00000003121	RUXF	87	72.000	ENSFCAG00000021942	-	87	72.000	Felis_catus
ENSELUG00000003121	RUXF	87	94.667	ENSFCAG00000029966	-	87	94.667	Felis_catus
ENSELUG00000003121	RUXF	86	94.595	ENSFALG00000010799	SNRPF	86	94.595	Ficedula_albicollis
ENSELUG00000003121	RUXF	87	94.667	ENSFDAG00000002831	-	87	94.667	Fukomys_damarensis
ENSELUG00000003121	RUXF	99	97.647	ENSFHEG00000003240	snrpf	75	97.647	Fundulus_heteroclitus
ENSELUG00000003121	RUXF	99	97.647	ENSGMOG00000007741	snrpf	100	97.647	Gadus_morhua
ENSELUG00000003121	RUXF	87	94.667	ENSGALG00000011409	SNRPF	87	94.667	Gallus_gallus
ENSELUG00000003121	RUXF	98	97.619	ENSGAFG00000016187	snrpf	97	97.619	Gambusia_affinis
ENSELUG00000003121	RUXF	99	98.824	ENSGACG00000020055	snrpf	100	98.824	Gasterosteus_aculeatus
ENSELUG00000003121	RUXF	86	87.838	ENSGAGG00000012945	-	69	89.333	Gopherus_agassizii
ENSELUG00000003121	RUXF	80	81.159	ENSGAGG00000014132	-	83	81.159	Gopherus_agassizii
ENSELUG00000003121	RUXF	74	90.625	ENSGAGG00000020974	-	54	90.625	Gopherus_agassizii
ENSELUG00000003121	RUXF	92	87.342	ENSGAGG00000022991	-	80	89.706	Gopherus_agassizii
ENSELUG00000003121	RUXF	70	85.000	ENSGAGG00000011163	-	86	87.755	Gopherus_agassizii
ENSELUG00000003121	RUXF	87	94.667	ENSGGOG00000001127	-	87	94.667	Gorilla_gorilla
ENSELUG00000003121	RUXF	98	76.190	ENSGGOG00000039936	-	83	73.333	Gorilla_gorilla
ENSELUG00000003121	RUXF	92	72.152	ENSGGOG00000039564	-	90	70.667	Gorilla_gorilla
ENSELUG00000003121	RUXF	87	94.667	ENSHGLG00000009108	SNRPF	87	94.667	Heterocephalus_glaber_female
ENSELUG00000003121	RUXF	87	93.333	ENSHGLG00000021172	-	87	93.333	Heterocephalus_glaber_female
ENSELUG00000003121	RUXF	87	93.333	ENSHGLG00100019596	-	87	93.333	Heterocephalus_glaber_male
ENSELUG00000003121	RUXF	86	94.595	ENSHGLG00100008103	-	87	94.595	Heterocephalus_glaber_male
ENSELUG00000003121	RUXF	73	85.714	ENSHCOG00000018663	snrpf	55	85.714	Hippocampus_comes
ENSELUG00000003121	RUXF	100	97.674	ENSIPUG00000018994	snrpf	100	97.674	Ictalurus_punctatus
ENSELUG00000003121	RUXF	87	94.667	ENSSTOG00000010434	-	87	94.667	Ictidomys_tridecemlineatus
ENSELUG00000003121	RUXF	100	76.744	ENSJJAG00000004558	-	89	77.333	Jaculus_jaculus
ENSELUG00000003121	RUXF	87	94.667	ENSJJAG00000011272	-	87	94.667	Jaculus_jaculus
ENSELUG00000003121	RUXF	78	88.060	ENSJJAG00000004828	-	86	89.286	Jaculus_jaculus
ENSELUG00000003121	RUXF	100	80.233	ENSJJAG00000010502	-	89	81.333	Jaculus_jaculus
ENSELUG00000003121	RUXF	100	96.512	ENSKMAG00000013566	snrpf	100	96.512	Kryptolebias_marmoratus
ENSELUG00000003121	RUXF	100	96.512	ENSLBEG00000008800	snrpf	100	96.512	Labrus_bergylta
ENSELUG00000003121	RUXF	87	93.333	ENSLACG00000002456	-	64	93.333	Latimeria_chalumnae
ENSELUG00000003121	RUXF	100	97.674	ENSLOCG00000015744	snrpf	100	97.674	Lepisosteus_oculatus
ENSELUG00000003121	RUXF	86	94.595	ENSLAFG00000017426	SNRPF	86	94.595	Loxodonta_africana
ENSELUG00000003121	RUXF	98	96.429	ENSMAMG00000016593	snrpf	99	96.429	Mastacembelus_armatus
ENSELUG00000003121	RUXF	98	97.619	ENSMZEG00005014701	snrpf	99	97.619	Maylandia_zebra
ENSELUG00000003121	RUXF	85	94.521	ENSMGAG00000011453	-	66	94.521	Meleagris_gallopavo
ENSELUG00000003121	RUXF	73	93.651	ENSMAUG00000019737	-	85	93.651	Mesocricetus_auratus
ENSELUG00000003121	RUXF	97	72.289	ENSMAUG00000010289	-	86	72.222	Mesocricetus_auratus
ENSELUG00000003121	RUXF	87	90.667	ENSMAUG00000008799	-	87	90.667	Mesocricetus_auratus
ENSELUG00000003121	RUXF	73	93.651	ENSMAUG00000016909	-	85	93.651	Mesocricetus_auratus
ENSELUG00000003121	RUXF	87	88.000	ENSMICG00000030494	-	60	88.000	Microcebus_murinus
ENSELUG00000003121	RUXF	87	94.667	ENSMICG00000012153	-	87	94.667	Microcebus_murinus
ENSELUG00000003121	RUXF	87	81.333	ENSMOCG00000022166	-	82	81.333	Microtus_ochrogaster
ENSELUG00000003121	RUXF	87	94.667	ENSMOCG00000020437	Snrpf	87	94.667	Microtus_ochrogaster
ENSELUG00000003121	RUXF	79	77.941	ENSMOCG00000020220	-	87	77.941	Microtus_ochrogaster
ENSELUG00000003121	RUXF	99	96.471	ENSMMOG00000007127	snrpf	100	96.471	Mola_mola
ENSELUG00000003121	RUXF	87	94.667	ENSMODG00000008091	SNRPF	66	94.667	Monodelphis_domestica
ENSELUG00000003121	RUXF	98	97.619	ENSMALG00000012328	snrpf	99	97.619	Monopterus_albus
ENSELUG00000003121	RUXF	87	94.667	MGP_CAROLIEiJ_G0015735	-	87	94.667	Mus_caroli
ENSELUG00000003121	RUXF	87	94.667	ENSMUSG00000020018	Snrpf	87	94.667	Mus_musculus
ENSELUG00000003121	RUXF	87	94.667	MGP_PahariEiJ_G0031350	Snrpf	87	94.667	Mus_pahari
ENSELUG00000003121	RUXF	87	94.667	MGP_SPRETEiJ_G0016553	Snrpf	87	94.667	Mus_spretus
ENSELUG00000003121	RUXF	87	94.667	ENSMPUG00000007176	-	67	94.667	Mustela_putorius_furo
ENSELUG00000003121	RUXF	87	94.667	ENSMLUG00000027932	-	71	94.667	Myotis_lucifugus
ENSELUG00000003121	RUXF	100	75.581	ENSMLUG00000026269	-	71	73.333	Myotis_lucifugus
ENSELUG00000003121	RUXF	86	94.595	ENSMLUG00000013577	-	87	94.595	Myotis_lucifugus
ENSELUG00000003121	RUXF	87	94.667	ENSMLUG00000026149	-	71	94.667	Myotis_lucifugus
ENSELUG00000003121	RUXF	87	94.667	ENSMLUG00000029201	-	71	94.667	Myotis_lucifugus
ENSELUG00000003121	RUXF	73	87.302	ENSNGAG00000005851	-	71	86.667	Nannospalax_galili
ENSELUG00000003121	RUXF	87	94.667	ENSNGAG00000024292	-	87	94.667	Nannospalax_galili
ENSELUG00000003121	RUXF	99	97.647	ENSNBRG00000011682	snrpf	87	97.647	Neolamprologus_brichardi
ENSELUG00000003121	RUXF	86	68.919	ENSMEUG00000000671	SNRPF	87	68.919	Notamacropus_eugenii
ENSELUG00000003121	RUXF	87	94.667	ENSODEG00000010328	-	87	94.667	Octodon_degus
ENSELUG00000003121	RUXF	87	93.333	ENSOCUG00000010925	SNRPF	66	93.333	Oryctolagus_cuniculus
ENSELUG00000003121	RUXF	99	97.647	ENSORLG00020008216	snrpf	100	97.647	Oryzias_latipes_hni
ENSELUG00000003121	RUXF	99	97.647	ENSORLG00015007418	snrpf	100	97.647	Oryzias_latipes_hsok
ENSELUG00000003121	RUXF	98	98.810	ENSOMEG00000003018	snrpf	99	98.810	Oryzias_melastigma
ENSELUG00000003121	RUXF	87	93.333	ENSOGAG00000030323	-	87	93.333	Otolemur_garnettii
ENSELUG00000003121	RUXF	87	94.667	ENSOARG00000011853	-	65	94.667	Ovis_aries
ENSELUG00000003121	RUXF	98	76.190	ENSPPAG00000037544	-	83	73.333	Pan_paniscus
ENSELUG00000003121	RUXF	92	72.152	ENSPPAG00000037479	-	91	70.667	Pan_paniscus
ENSELUG00000003121	RUXF	87	94.667	ENSPPRG00000005875	-	87	94.667	Panthera_pardus
ENSELUG00000003121	RUXF	98	73.810	ENSPPRG00000007449	-	77	73.333	Panthera_pardus
ENSELUG00000003121	RUXF	87	94.667	ENSPTIG00000007520	SNRPF	87	94.667	Panthera_tigris_altaica
ENSELUG00000003121	RUXF	98	76.190	ENSPTIG00000005117	-	89	73.333	Panthera_tigris_altaica
ENSELUG00000003121	RUXF	98	76.190	ENSPTRG00000043814	-	83	73.333	Pan_troglodytes
ENSELUG00000003121	RUXF	92	72.152	ENSPTRG00000047717	-	91	70.667	Pan_troglodytes
ENSELUG00000003121	RUXF	99	97.647	ENSPKIG00000014784	snrpf	93	97.647	Paramormyrops_kingsleyae
ENSELUG00000003121	RUXF	86	94.595	ENSPSIG00000016462	SNRPF	86	94.595	Pelodiscus_sinensis
ENSELUG00000003121	RUXF	99	96.471	ENSPMGG00000023548	snrpf	100	96.471	Periophthalmus_magnuspinnatus
ENSELUG00000003121	RUXF	87	94.667	ENSPEMG00000023326	Snrpf	87	94.667	Peromyscus_maniculatus_bairdii
ENSELUG00000003121	RUXF	98	97.619	ENSPLAG00000023932	snrpf	99	97.619	Poecilia_latipinna
ENSELUG00000003121	RUXF	98	97.619	ENSPMEG00000003377	snrpf	99	97.619	Poecilia_mexicana
ENSELUG00000003121	RUXF	98	97.619	ENSPREG00000022635	snrpf	97	97.619	Poecilia_reticulata
ENSELUG00000003121	RUXF	87	94.667	ENSPPYG00000004847	-	87	94.667	Pongo_abelii
ENSELUG00000003121	RUXF	87	94.667	ENSPCOG00000023833	-	87	94.667	Propithecus_coquereli
ENSELUG00000003121	RUXF	87	94.667	ENSPVAG00000009036	SNRPF	87	94.667	Pteropus_vampyrus
ENSELUG00000003121	RUXF	98	97.619	ENSPNYG00000021712	snrpf	99	97.619	Pundamilia_nyererei
ENSELUG00000003121	RUXF	98	98.810	ENSPNAG00000019117	snrpf	99	98.810	Pygocentrus_nattereri
ENSELUG00000003121	RUXF	87	94.667	ENSRNOG00000005556	Snrpf	87	94.667	Rattus_norvegicus
ENSELUG00000003121	RUXF	87	92.000	ENSRBIG00000030414	-	87	92.000	Rhinopithecus_bieti
ENSELUG00000003121	RUXF	87	92.000	ENSRROG00000021975	-	87	92.000	Rhinopithecus_roxellana
ENSELUG00000003121	RUXF	81	59.155	YPR182W	SMX3	83	59.155	Saccharomyces_cerevisiae
ENSELUG00000003121	RUXF	87	81.333	ENSSBOG00000032297	-	86	81.333	Saimiri_boliviensis_boliviensis
ENSELUG00000003121	RUXF	87	94.667	ENSSBOG00000012868	-	87	94.667	Saimiri_boliviensis_boliviensis
ENSELUG00000003121	RUXF	87	94.667	ENSSBOG00000036179	-	87	94.667	Saimiri_boliviensis_boliviensis
ENSELUG00000003121	RUXF	91	75.309	ENSSBOG00000027638	-	91	75.309	Saimiri_boliviensis_boliviensis
ENSELUG00000003121	RUXF	86	94.595	ENSSHAG00000012294	SNRPF	67	94.595	Sarcophilus_harrisii
ENSELUG00000003121	RUXF	74	96.875	ENSSFOG00015021523	snrpf	96	96.875	Scleropages_formosus
ENSELUG00000003121	RUXF	100	97.674	ENSSMAG00000005533	snrpf	99	97.674	Scophthalmus_maximus
ENSELUG00000003121	RUXF	76	96.923	ENSSDUG00000016283	snrpf	77	96.923	Seriola_dumerili
ENSELUG00000003121	RUXF	93	71.250	ENSSLDG00000003885	-	90	74.324	Seriola_lalandi_dorsalis
ENSELUG00000003121	RUXF	100	96.512	ENSSLDG00000005119	snrpf	100	96.512	Seriola_lalandi_dorsalis
ENSELUG00000003121	RUXF	85	94.521	ENSSPUG00000014590	-	86	94.521	Sphenodon_punctatus
ENSELUG00000003121	RUXF	99	97.647	ENSSPAG00000003283	snrpf	97	97.647	Stegastes_partitus
ENSELUG00000003121	RUXF	87	94.667	ENSSSCG00000000895	SNRPF	87	94.667	Sus_scrofa
ENSELUG00000003121	RUXF	67	94.828	ENSTRUG00000014956	snrpf	84	94.828	Takifugu_rubripes
ENSELUG00000003121	RUXF	100	96.512	ENSTNIG00000012672	snrpf	100	96.512	Tetraodon_nigroviridis
ENSELUG00000003121	RUXF	87	69.333	ENSTTRG00000006070	SNRPF	87	69.333	Tursiops_truncatus
ENSELUG00000003121	RUXF	87	94.667	ENSUAMG00000008176	-	87	94.667	Ursus_americanus
ENSELUG00000003121	RUXF	100	82.558	ENSUAMG00000001101	-	88	84.000	Ursus_americanus
ENSELUG00000003121	RUXF	87	94.667	ENSUMAG00000003528	-	87	94.667	Ursus_maritimus
ENSELUG00000003121	RUXF	87	84.000	ENSUMAG00000006177	-	88	84.000	Ursus_maritimus
ENSELUG00000003121	RUXF	87	94.667	ENSVPAG00000008712	-	87	94.667	Vicugna_pacos
ENSELUG00000003121	RUXF	91	87.179	ENSVVUG00000023821	-	96	86.667	Vulpes_vulpes
ENSELUG00000003121	RUXF	86	73.684	ENSXETG00000021630	snrpf	87	73.684	Xenopus_tropicalis
ENSELUG00000003121	RUXF	98	97.619	ENSXCOG00000013860	snrpf	97	97.619	Xiphophorus_couchianus
ENSELUG00000003121	RUXF	98	97.619	ENSXMAG00000015448	snrpf	99	97.619	Xiphophorus_maculatus