EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000003159 (Gene tree)
Gene ID: 105006211
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 8713 bases
Position: chrLG05:12689681-12698393
Accession: 105006211
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000001710	DND1_DSRM	PF14709.7	3.7e-26	1	1
ENSELUP00000001710	RRM_1	PF00076.22	4e-41	1	3
ENSELUP00000001710	RRM_1	PF00076.22	4e-41	2	3
ENSELUP00000001710	RRM_1	PF00076.22	4e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000016906	-	2427	XM_010864637	ENSELUP00000001710	590 (aa)	XP_010862939	UPI0005766328

Gene Model

Click here to download ENSELUG00000003159's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000003159's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000003159	a1cf	50	53.356	ENSELUG00000013519	syncripl	53	53.242
ENSELUG00000003159	a1cf	75	59.111	ENSELUG00000006148	rbm47	63	66.276
ENSELUG00000003159	a1cf	52	63.816	ENSELUG00000008166	rbm46	78	64.527

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000003159	a1cf	100	79.833	ENSG00000148584	A1CF	100	87.562	Homo_sapiens
ENSELUG00000003159	a1cf	100	77.649	ENSAPOG00000008259	a1cf	100	78.010	Acanthochromis_polyacanthus
ENSELUG00000003159	a1cf	100	78.930	ENSAMEG00000000523	A1CF	100	78.261	Ailuropoda_melanoleuca
ENSELUG00000003159	a1cf	100	79.772	ENSACIG00000008632	a1cf	100	80.587	Amphilophus_citrinellus
ENSELUG00000003159	a1cf	100	78.818	ENSAOCG00000023744	a1cf	96	87.246	Amphiprion_ocellaris
ENSELUG00000003159	a1cf	100	79.803	ENSAPEG00000009537	a1cf	100	81.117	Amphiprion_percula
ENSELUG00000003159	a1cf	100	81.759	ENSATEG00000013720	a1cf	100	82.248	Anabas_testudineus
ENSELUG00000003159	a1cf	100	80.504	ENSAPLG00000002964	A1CF	100	79.496	Anas_platyrhynchos
ENSELUG00000003159	a1cf	100	78.655	ENSACAG00000015269	A1CF	100	78.655	Anolis_carolinensis
ENSELUG00000003159	a1cf	100	78.333	ENSANAG00000019974	A1CF	100	77.500	Aotus_nancymaae
ENSELUG00000003159	a1cf	100	81.198	ENSACLG00000017428	a1cf	100	82.030	Astatotilapia_calliptera
ENSELUG00000003159	a1cf	100	80.858	ENSAMXG00000018180	a1cf	100	80.858	Astyanax_mexicanus
ENSELUG00000003159	a1cf	100	78.203	ENSBTAG00000021195	A1CF	100	77.537	Bos_taurus
ENSELUG00000003159	a1cf	100	79.833	ENSCJAG00000005045	A1CF	100	79.000	Callithrix_jacchus
ENSELUG00000003159	a1cf	100	79.229	ENSCAFG00000015581	A1CF	100	78.559	Canis_familiaris
ENSELUG00000003159	a1cf	100	79.229	ENSCAFG00020026421	A1CF	98	81.544	Canis_lupus_dingo
ENSELUG00000003159	a1cf	100	79.201	ENSCHIG00000020411	A1CF	100	78.369	Capra_hircus
ENSELUG00000003159	a1cf	97	77.855	ENSTSYG00000001755	A1CF	100	77.345	Carlito_syrichta
ENSELUG00000003159	a1cf	100	74.691	ENSCAPG00000017386	A1CF	100	74.679	Cavia_aperea
ENSELUG00000003159	a1cf	100	79.500	ENSCPOG00000009807	A1CF	100	78.500	Cavia_porcellus
ENSELUG00000003159	a1cf	100	80.134	ENSCCAG00000018168	A1CF	100	79.299	Cebus_capucinus
ENSELUG00000003159	a1cf	100	78.595	ENSCATG00000043715	A1CF	100	77.759	Cercocebus_atys
ENSELUG00000003159	a1cf	100	79.368	ENSCLAG00000010424	A1CF	100	78.536	Chinchilla_lanigera
ENSELUG00000003159	a1cf	100	80.100	ENSCSAG00000007032	A1CF	100	79.264	Chlorocebus_sabaeus
ENSELUG00000003159	a1cf	98	75.336	ENSCHOG00000009089	A1CF	98	74.329	Choloepus_hoffmanni
ENSELUG00000003159	a1cf	100	80.504	ENSCPBG00000026464	A1CF	100	80.504	Chrysemys_picta_bellii
ENSELUG00000003159	a1cf	100	79.933	ENSCANG00000038032	A1CF	100	79.097	Colobus_angolensis_palliatus
ENSELUG00000003159	a1cf	100	79.368	ENSCGRG00001017413	A1cf	100	78.702	Cricetulus_griseus_chok1gshd
ENSELUG00000003159	a1cf	100	78.869	ENSCGRG00000017332	A1cf	100	78.369	Cricetulus_griseus_crigri
ENSELUG00000003159	a1cf	100	79.868	ENSCSEG00000002361	a1cf	100	80.033	Cynoglossus_semilaevis
ENSELUG00000003159	a1cf	100	80.130	ENSCVAG00000010520	a1cf	100	80.945	Cyprinodon_variegatus
ENSELUG00000003159	a1cf	100	85.284	ENSDARG00000002968	a1cf	100	85.284	Danio_rerio
ENSELUG00000003159	a1cf	100	78.536	ENSDNOG00000002829	A1CF	100	78.037	Dasypus_novemcinctus
ENSELUG00000003159	a1cf	80	84.727	ENSETEG00000012527	A1CF	81	84.727	Echinops_telfairi
ENSELUG00000003159	a1cf	100	79.104	ENSEASG00005012924	A1CF	100	78.275	Equus_asinus_asinus
ENSELUG00000003159	a1cf	100	78.773	ENSECAG00000010424	A1CF	100	77.944	Equus_caballus
ENSELUG00000003159	a1cf	81	68.487	ENSEEUG00000000013	A1CF	97	68.627	Erinaceus_europaeus
ENSELUG00000003159	a1cf	100	77.926	ENSFCAG00000011179	A1CF	100	77.090	Felis_catus
ENSELUG00000003159	a1cf	100	79.496	ENSFALG00000013183	A1CF	100	79.496	Ficedula_albicollis
ENSELUG00000003159	a1cf	100	77.537	ENSFDAG00000019371	A1CF	100	76.539	Fukomys_damarensis
ENSELUG00000003159	a1cf	100	73.301	ENSFHEG00000019652	a1cf	96	88.281	Fundulus_heteroclitus
ENSELUG00000003159	a1cf	100	78.878	ENSGMOG00000018943	a1cf	100	78.089	Gadus_morhua
ENSELUG00000003159	a1cf	95	80.389	ENSGALG00000003765	A1CF	97	79.329	Gallus_gallus
ENSELUG00000003159	a1cf	100	74.918	ENSGAFG00000014868	a1cf	100	74.918	Gambusia_affinis
ENSELUG00000003159	a1cf	100	79.605	ENSGACG00000010241	a1cf	100	80.263	Gasterosteus_aculeatus
ENSELUG00000003159	a1cf	96	79.335	ENSGAGG00000016508	A1CF	98	79.335	Gopherus_agassizii
ENSELUG00000003159	a1cf	100	79.833	ENSGGOG00000009670	A1CF	100	78.833	Gorilla_gorilla
ENSELUG00000003159	a1cf	100	80.098	ENSHBUG00000021959	a1cf	100	80.914	Haplochromis_burtoni
ENSELUG00000003159	a1cf	100	78.869	ENSHGLG00000008955	A1CF	100	78.203	Heterocephalus_glaber_female
ENSELUG00000003159	a1cf	100	78.203	ENSHGLG00100000518	A1CF	100	77.537	Heterocephalus_glaber_male
ENSELUG00000003159	a1cf	100	72.920	ENSHCOG00000017669	a1cf	100	75.530	Hippocampus_comes
ENSELUG00000003159	a1cf	91	88.848	ENSIPUG00000010367	a1cf	96	88.848	Ictalurus_punctatus
ENSELUG00000003159	a1cf	100	80.650	ENSKMAG00000006568	a1cf	100	81.789	Kryptolebias_marmoratus
ENSELUG00000003159	a1cf	99	82.815	ENSLBEG00000020994	a1cf	98	83.690	Labrus_bergylta
ENSELUG00000003159	a1cf	100	84.317	ENSLACG00000008061	A1CF	100	84.317	Latimeria_chalumnae
ENSELUG00000003159	a1cf	100	87.879	ENSLOCG00000006302	a1cf	100	87.037	Lepisosteus_oculatus
ENSELUG00000003159	a1cf	100	79.867	ENSLAFG00000015462	A1CF	100	80.033	Loxodonta_africana
ENSELUG00000003159	a1cf	100	78.595	ENSMFAG00000035948	A1CF	100	77.759	Macaca_fascicularis
ENSELUG00000003159	a1cf	100	78.595	ENSMMUG00000007077	A1CF	100	77.759	Macaca_mulatta
ENSELUG00000003159	a1cf	100	78.428	ENSMNEG00000031454	A1CF	100	77.592	Macaca_nemestrina
ENSELUG00000003159	a1cf	100	79.933	ENSMLEG00000037223	A1CF	100	79.097	Mandrillus_leucophaeus
ENSELUG00000003159	a1cf	100	79.051	ENSMAMG00000010402	a1cf	100	79.902	Mastacembelus_armatus
ENSELUG00000003159	a1cf	100	82.915	ENSMZEG00005013245	a1cf	100	82.915	Maylandia_zebra
ENSELUG00000003159	a1cf	100	80.201	ENSMGAG00000001507	A1CF	100	79.195	Meleagris_gallopavo
ENSELUG00000003159	a1cf	100	78.702	ENSMAUG00000007422	A1cf	100	78.037	Mesocricetus_auratus
ENSELUG00000003159	a1cf	100	77.649	ENSMICG00000003377	A1CF	100	77.980	Microcebus_murinus
ENSELUG00000003159	a1cf	100	79.534	ENSMOCG00000021536	A1cf	100	78.702	Microtus_ochrogaster
ENSELUG00000003159	a1cf	100	72.500	ENSMMOG00000009422	a1cf	100	73.333	Mola_mola
ENSELUG00000003159	a1cf	91	79.888	ENSMODG00000016478	A1CF	97	79.888	Monodelphis_domestica
ENSELUG00000003159	a1cf	100	78.752	ENSMALG00000012992	a1cf	100	78.583	Monopterus_albus
ENSELUG00000003159	a1cf	100	78.536	MGP_CAROLIEiJ_G0022873	A1cf	100	77.704	Mus_caroli
ENSELUG00000003159	a1cf	100	78.536	ENSMUSG00000052595	A1cf	99	81.414	Mus_musculus
ENSELUG00000003159	a1cf	100	78.037	MGP_PahariEiJ_G0014366	A1cf	100	77.038	Mus_pahari
ENSELUG00000003159	a1cf	100	78.369	MGP_SPRETEiJ_G0023792	A1cf	100	77.537	Mus_spretus
ENSELUG00000003159	a1cf	100	74.080	ENSMPUG00000016971	A1CF	100	73.579	Mustela_putorius_furo
ENSELUG00000003159	a1cf	100	78.869	ENSMLUG00000016071	A1CF	100	78.037	Myotis_lucifugus
ENSELUG00000003159	a1cf	100	79.534	ENSNGAG00000015136	A1cf	100	78.536	Nannospalax_galili
ENSELUG00000003159	a1cf	100	79.935	ENSNBRG00000001712	a1cf	100	80.750	Neolamprologus_brichardi
ENSELUG00000003159	a1cf	100	79.700	ENSNLEG00000012028	A1CF	100	78.869	Nomascus_leucogenys
ENSELUG00000003159	a1cf	94	78.508	ENSMEUG00000015909	A1CF	100	78.508	Notamacropus_eugenii
ENSELUG00000003159	a1cf	90	71.132	ENSOPRG00000010667	A1CF	97	69.963	Ochotona_princeps
ENSELUG00000003159	a1cf	100	80.750	ENSONIG00000019105	a1cf	100	80.914	Oreochromis_niloticus
ENSELUG00000003159	a1cf	80	79.661	ENSOANG00000007360	A1CF	99	79.661	Ornithorhynchus_anatinus
ENSELUG00000003159	a1cf	100	76.910	ENSOCUG00000011587	A1CF	100	76.412	Oryctolagus_cuniculus
ENSELUG00000003159	a1cf	100	80.699	ENSORLG00000013342	a1cf	100	80.699	Oryzias_latipes
ENSELUG00000003159	a1cf	100	80.196	ENSORLG00020000586	a1cf	100	81.015	Oryzias_latipes_hni
ENSELUG00000003159	a1cf	100	80.196	ENSORLG00015018569	a1cf	100	81.015	Oryzias_latipes_hsok
ENSELUG00000003159	a1cf	100	79.051	ENSOMEG00000013531	a1cf	100	79.051	Oryzias_melastigma
ENSELUG00000003159	a1cf	100	79.264	ENSOGAG00000012884	A1CF	100	79.599	Otolemur_garnettii
ENSELUG00000003159	a1cf	100	79.368	ENSOARG00000013695	A1CF	100	78.369	Ovis_aries
ENSELUG00000003159	a1cf	98	77.665	ENSPPAG00000028115	A1CF	99	82.164	Pan_paniscus
ENSELUG00000003159	a1cf	100	79.599	ENSPPRG00000012180	A1CF	100	78.763	Panthera_pardus
ENSELUG00000003159	a1cf	100	79.599	ENSPTIG00000021223	A1CF	100	78.763	Panthera_tigris_altaica
ENSELUG00000003159	a1cf	100	80.000	ENSPTRG00000002508	A1CF	100	79.000	Pan_troglodytes
ENSELUG00000003159	a1cf	100	78.595	ENSPANG00000021988	A1CF	100	77.759	Papio_anubis
ENSELUG00000003159	a1cf	100	87.940	ENSPKIG00000025176	a1cf	100	88.107	Paramormyrops_kingsleyae
ENSELUG00000003159	a1cf	100	79.328	ENSPSIG00000010318	A1CF	100	79.328	Pelodiscus_sinensis
ENSELUG00000003159	a1cf	98	70.940	ENSPMGG00000013359	a1cf	99	72.184	Periophthalmus_magnuspinnatus
ENSELUG00000003159	a1cf	100	79.700	ENSPEMG00000015021	A1cf	100	78.702	Peromyscus_maniculatus_bairdii
ENSELUG00000003159	a1cf	100	78.523	ENSPCIG00000002175	A1CF	100	78.523	Phascolarctos_cinereus
ENSELUG00000003159	a1cf	100	81.270	ENSPFOG00000006683	a1cf	100	82.248	Poecilia_formosa
ENSELUG00000003159	a1cf	100	81.270	ENSPFOG00000007437	-	100	82.248	Poecilia_formosa
ENSELUG00000003159	a1cf	100	79.967	ENSPLAG00000001210	-	100	80.945	Poecilia_latipinna
ENSELUG00000003159	a1cf	100	79.967	ENSPLAG00000000026	a1cf	100	80.945	Poecilia_latipinna
ENSELUG00000003159	a1cf	100	73.529	ENSPMEG00000015529	-	100	74.510	Poecilia_mexicana
ENSELUG00000003159	a1cf	100	72.386	ENSPMEG00000000921	a1cf	100	73.366	Poecilia_mexicana
ENSELUG00000003159	a1cf	100	81.270	ENSPREG00000016298	a1cf	100	82.248	Poecilia_reticulata
ENSELUG00000003159	a1cf	100	78.536	ENSPPYG00000002819	A1CF	100	77.704	Pongo_abelii
ENSELUG00000003159	a1cf	79	62.762	ENSPCAG00000006463	A1CF	79	62.762	Procavia_capensis
ENSELUG00000003159	a1cf	100	79.236	ENSPCOG00000024172	A1CF	100	79.568	Propithecus_coquereli
ENSELUG00000003159	a1cf	100	81.566	ENSPNYG00000017944	a1cf	100	82.382	Pundamilia_nyererei
ENSELUG00000003159	a1cf	100	85.762	ENSPNAG00000007704	a1cf	100	85.762	Pygocentrus_nattereri
ENSELUG00000003159	a1cf	100	77.537	ENSRNOG00000033195	A1cf	100	77.704	Rattus_norvegicus
ENSELUG00000003159	a1cf	100	74.624	ENSRBIG00000042892	A1CF	100	76.070	Rhinopithecus_bieti
ENSELUG00000003159	a1cf	100	79.933	ENSRROG00000041398	A1CF	100	79.097	Rhinopithecus_roxellana
ENSELUG00000003159	a1cf	100	79.700	ENSSBOG00000021930	A1CF	100	78.869	Saimiri_boliviensis_boliviensis
ENSELUG00000003159	a1cf	100	79.431	ENSSHAG00000005096	A1CF	100	78.428	Sarcophilus_harrisii
ENSELUG00000003159	a1cf	100	86.589	ENSSFOG00015011774	a1cf	100	86.921	Scleropages_formosus
ENSELUG00000003159	a1cf	100	81.922	ENSSMAG00000013271	a1cf	100	82.085	Scophthalmus_maximus
ENSELUG00000003159	a1cf	100	82.537	ENSSDUG00000013930	a1cf	100	82.372	Seriola_dumerili
ENSELUG00000003159	a1cf	100	75.410	ENSSLDG00000004290	a1cf	100	75.410	Seriola_lalandi_dorsalis
ENSELUG00000003159	a1cf	97	68.089	ENSSARG00000005940	A1CF	96	69.406	Sorex_araneus
ENSELUG00000003159	a1cf	95	79.646	ENSSPUG00000006797	A1CF	95	78.584	Sphenodon_punctatus
ENSELUG00000003159	a1cf	100	80.033	ENSSSCG00000010431	A1CF	100	79.201	Sus_scrofa
ENSELUG00000003159	a1cf	100	80.100	ENSTGUG00000005090	A1CF	100	80.100	Taeniopygia_guttata
ENSELUG00000003159	a1cf	100	79.350	ENSTRUG00000001982	a1cf	100	79.350	Takifugu_rubripes
ENSELUG00000003159	a1cf	100	78.862	ENSTNIG00000003580	a1cf	100	78.862	Tetraodon_nigroviridis
ENSELUG00000003159	a1cf	98	71.986	ENSTTRG00000013190	A1CF	96	71.307	Tursiops_truncatus
ENSELUG00000003159	a1cf	100	77.926	ENSUAMG00000020065	A1CF	100	77.090	Ursus_americanus
ENSELUG00000003159	a1cf	100	79.362	ENSUMAG00000011162	A1CF	100	78.523	Ursus_maritimus
ENSELUG00000003159	a1cf	87	76.281	ENSVPAG00000006130	A1CF	86	75.142	Vicugna_pacos
ENSELUG00000003159	a1cf	100	78.224	ENSVVUG00000002504	A1CF	100	77.387	Vulpes_vulpes
ENSELUG00000003159	a1cf	100	76.351	ENSXETG00000006611	a1cf	100	76.351	Xenopus_tropicalis
ENSELUG00000003159	a1cf	100	81.967	ENSXCOG00000003302	a1cf	100	81.967	Xiphophorus_couchianus
ENSELUG00000003159	a1cf	100	83.115	ENSXMAG00000016703	a1cf	100	83.115	Xiphophorus_maculatus