EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSELUG00000003195 (Gene tree)
Gene ID
105015806
Gene Symbol
pabpc4
Alias
cb12|sb:cb12
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Esox_lucius
Status
putative
Strand
Plus strand
Length
12329 bases
Position
chrLG15:20369329-20381657
Accession
105015806
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSELUP00000001760PABPPF00658.181.8e-3111
ENSELUP00000001760RRM_5PF13893.64.1e-0911
ENSELUP00000001760RRM_1PF00076.222.7e-8814
ENSELUP00000001760RRM_1PF00076.222.7e-8824
ENSELUP00000001760RRM_1PF00076.222.7e-8834
ENSELUP00000001760RRM_1PF00076.222.7e-8844
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSELUT00000016857-4798XM_010879216ENSELUP00000001760639 (aa)XP_010877518UPI000576A3AD
Gene Model
Click here to download ENSELUG00000003195's gene model file
Pathways
Pathway IDPathway NameSource
els03013RNA transportKEGG
els03015mRNA surveillance pathwayKEGG
els03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000003195's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSELUG00000003195pabpc45733.113ENSELUG00000008024elavl1a9233.113
ENSELUG00000003195pabpc45934.940ENSELUG00000008025elavl48034.940
ENSELUG00000003195pabpc46155.975ENSELUG00000005247-8555.975
ENSELUG00000003195pabpc49767.081ENSELUG00000001811pabpc1l9966.254
ENSELUG00000003195pabpc45137.500ENSELUG00000005848-5137.500
ENSELUG00000003195pabpc45836.145ENSELUG00000010026ELAVL28536.145
ENSELUG00000003195pabpc45430.357ENSELUG00000020089-5730.357
ENSELUG00000003195pabpc45836.145ENSELUG00000023043elavl39236.145
ENSELUG00000003195pabpc49774.608ENSELUG00000015062-9874.138
ENSELUG00000003195pabpc45760.811ENSELUG00000005389-9360.811
ENSELUG00000003195pabpc49776.115ENSELUG00000003614pabpc1a9875.637
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSELUG00000003195pabpc49983.201ENSG00000090621PABPC49994.595Homo_sapiens
ENSELUG00000003195pabpc49992.857ENSAPOG00000001161pabpc49893.153Acanthochromis_polyacanthus
ENSELUG00000003195pabpc49749.206ENSAMEG00000015083-9847.937Ailuropoda_melanoleuca
ENSELUG00000003195pabpc49880.938ENSAMEG00000011535-9980.213Ailuropoda_melanoleuca
ENSELUG00000003195pabpc410092.175ENSACIG00000023343pabpc49892.994Amphilophus_citrinellus
ENSELUG00000003195pabpc49992.698ENSAOCG00000021529pabpc49892.994Amphiprion_ocellaris
ENSELUG00000003195pabpc49992.698ENSAPEG00000019196pabpc49892.994Amphiprion_percula
ENSELUG00000003195pabpc49991.918ENSATEG00000007402pabpc49892.210Anabas_testudineus
ENSELUG00000003195pabpc49986.478ENSAPLG00000009729-9986.054Anas_platyrhynchos
ENSELUG00000003195pabpc49885.461ENSACAG00000002544PABPC49984.973Anolis_carolinensis
ENSELUG00000003195pabpc49884.019ENSANAG00000025079PABPC49983.439Aotus_nancymaae
ENSELUG00000003195pabpc410092.175ENSACLG00000019558pabpc49892.994Astatotilapia_calliptera
ENSELUG00000003195pabpc49986.499ENSAMXG00000018779pabpc49987.420Astyanax_mexicanus
ENSELUG00000003195pabpc45782.143ENSBTAG00000048536-9382.143Bos_taurus
ENSELUG00000003195pabpc49981.538ENSBTAG00000017125PABPC49981.747Bos_taurus
ENSELUG00000003195pabpc49884.019ENSCJAG00000002512-9983.439Callithrix_jacchus
ENSELUG00000003195pabpc47379.911ENSCJAG00000045953-8578.125Callithrix_jacchus
ENSELUG00000003195pabpc49884.335ENSCAFG00000003081PABPC49983.758Canis_familiaris
ENSELUG00000003195pabpc49584.514ENSCAFG00020004161PABPC49980.365Canis_lupus_dingo
ENSELUG00000003195pabpc49865.571ENSCHIG00000023385-9865.197Capra_hircus
ENSELUG00000003195pabpc49980.816ENSCHIG00000019398-9980.213Capra_hircus
ENSELUG00000003195pabpc49884.177ENSTSYG00000006532PABPC49983.599Carlito_syrichta
ENSELUG00000003195pabpc49883.861ENSCAPG00000015984PABPC49983.280Cavia_aperea
ENSELUG00000003195pabpc49884.177ENSCPOG00000009552PABPC49983.599Cavia_porcellus
ENSELUG00000003195pabpc49884.019ENSCCAG00000037306PABPC49983.439Cebus_capucinus
ENSELUG00000003195pabpc49884.177ENSCATG00000042164PABPC49983.599Cercocebus_atys
ENSELUG00000003195pabpc49884.177ENSCLAG00000011899PABPC49983.599Chinchilla_lanigera
ENSELUG00000003195pabpc49880.938ENSCSAG00000001135PABPC49980.213Chlorocebus_sabaeus
ENSELUG00000003195pabpc48488.684ENSCHOG00000005327PABPC47889.218Choloepus_hoffmanni
ENSELUG00000003195pabpc49986.950ENSCPBG00000001038PABPC49986.529Chrysemys_picta_bellii
ENSELUG00000003195pabpc49884.320ENSCANG00000034177PABPC49983.736Colobus_angolensis_palliatus
ENSELUG00000003195pabpc49881.920ENSCGRG00001018166Pabpc49882.428Cricetulus_griseus_chok1gshd
ENSELUG00000003195pabpc49782.172ENSCGRG00000009777Pabpc49882.553Cricetulus_griseus_crigri
ENSELUG00000003195pabpc410092.019ENSCSEG00000000130pabpc49892.675Cynoglossus_semilaevis
ENSELUG00000003195pabpc49892.504ENSCVAG00000019246pabpc49993.366Cyprinodon_variegatus
ENSELUG00000003195pabpc49893.631ENSDARG00000059259pabpc410093.399Danio_rerio
ENSELUG00000003195pabpc49883.481ENSDNOG00000018444-9982.826Dasypus_novemcinctus
ENSELUG00000003195pabpc49981.567ENSDORG00000011581Pabpc49982.031Dipodomys_ordii
ENSELUG00000003195pabpc48554.579ENSETEG00000009172-9953.480Echinops_telfairi
ENSELUG00000003195pabpc49890.323ENSETEG00000018453-8390.323Echinops_telfairi
ENSELUG00000003195pabpc49775.835ENSEBUG00000000992pabpc49975.439Eptatretus_burgeri
ENSELUG00000003195pabpc49677.398ENSEBUG00000013782pabpc49977.244Eptatretus_burgeri
ENSELUG00000003195pabpc49881.089ENSEASG00005014119PABPC49980.365Equus_asinus_asinus
ENSELUG00000003195pabpc49881.089ENSECAG00000009396PABPC49980.365Equus_caballus
ENSELUG00000003195pabpc49779.109ENSEEUG00000002962PABPC49978.539Erinaceus_europaeus
ENSELUG00000003195pabpc49884.335ENSFCAG00000015254-9983.758Felis_catus
ENSELUG00000003195pabpc49986.635ENSFALG00000000543PABPC49986.212Ficedula_albicollis
ENSELUG00000003195pabpc49880.694ENSFDAG00000020016-9980.213Fukomys_damarensis
ENSELUG00000003195pabpc48953.814ENSFDAG00000010581-9951.127Fukomys_damarensis
ENSELUG00000003195pabpc410092.488ENSFHEG00000007548pabpc49893.153Fundulus_heteroclitus
ENSELUG00000003195pabpc410090.141ENSGMOG00000019025pabpc49891.083Gadus_morhua
ENSELUG00000003195pabpc49987.046ENSGALG00000003800PABPC49986.624Gallus_gallus
ENSELUG00000003195pabpc49995.215ENSGAFG00000018195pabpc49897.778Gambusia_affinis
ENSELUG00000003195pabpc410090.469ENSGACG00000007179pabpc49891.097Gasterosteus_aculeatus
ENSELUG00000003195pabpc49987.107ENSGAGG00000001888PABPC49986.688Gopherus_agassizii
ENSELUG00000003195pabpc49884.019ENSGGOG00000004002PABPC49983.439Gorilla_gorilla
ENSELUG00000003195pabpc410092.019ENSHBUG00000020206pabpc49892.834Haplochromis_burtoni
ENSELUG00000003195pabpc49884.019ENSHGLG00000011162PABPC49983.439Heterocephalus_glaber_female
ENSELUG00000003195pabpc49884.019ENSHGLG00100001580PABPC49983.439Heterocephalus_glaber_male
ENSELUG00000003195pabpc410090.767ENSHCOG00000012694pabpc49892.516Hippocampus_comes
ENSELUG00000003195pabpc49791.761ENSIPUG00000016620pabpc49891.680Ictalurus_punctatus
ENSELUG00000003195pabpc49983.201ENSSTOG00000010416PABPC49982.748Ictidomys_tridecemlineatus
ENSELUG00000003195pabpc49880.526ENSJJAG00000007781Pabpc49980.469Jaculus_jaculus
ENSELUG00000003195pabpc49990.610ENSKMAG00000013597pabpc49891.256Kryptolebias_marmoratus
ENSELUG00000003195pabpc410091.732ENSLBEG00000013654pabpc49892.687Labrus_bergylta
ENSELUG00000003195pabpc49986.813ENSLACG00000011907PABPC49986.551Latimeria_chalumnae
ENSELUG00000003195pabpc49991.837ENSLOCG00000001877pabpc49992.516Lepisosteus_oculatus
ENSELUG00000003195pabpc49983.360ENSLAFG00000000151PABPC49982.907Loxodonta_africana
ENSELUG00000003195pabpc49884.177ENSMFAG00000041481PABPC49983.599Macaca_fascicularis
ENSELUG00000003195pabpc49880.938ENSMMUG00000007497PABPC49980.213Macaca_mulatta
ENSELUG00000003195pabpc49884.177ENSMNEG00000043054PABPC49983.599Macaca_nemestrina
ENSELUG00000003195pabpc49884.177ENSMLEG00000040716PABPC49983.599Mandrillus_leucophaeus
ENSELUG00000003195pabpc49992.698ENSMAMG00000010025pabpc49892.994Mastacembelus_armatus
ENSELUG00000003195pabpc410092.019ENSMZEG00005006141pabpc49892.834Maylandia_zebra
ENSELUG00000003195pabpc49883.108ENSMGAG00000005408PABPC49982.624Meleagris_gallopavo
ENSELUG00000003195pabpc47178.095ENSMAUG00000001295-9777.143Mesocricetus_auratus
ENSELUG00000003195pabpc47589.583ENSMAUG00000019763-8289.796Mesocricetus_auratus
ENSELUG00000003195pabpc45678.947ENSMAUG00000004089-9678.947Mesocricetus_auratus
ENSELUG00000003195pabpc49873.759ENSMICG00000036729-9973.036Microcebus_murinus
ENSELUG00000003195pabpc48882.416ENSMICG00000016633-9982.028Microcebus_murinus
ENSELUG00000003195pabpc49983.412ENSMOCG00000006763Pabpc49883.439Microtus_ochrogaster
ENSELUG00000003195pabpc410088.576ENSMMOG00000002363pabpc49887.912Mola_mola
ENSELUG00000003195pabpc49782.949ENSMODG00000017657-9982.192Monodelphis_domestica
ENSELUG00000003195pabpc45970.133ENSMODG00000018051-9670.133Monodelphis_domestica
ENSELUG00000003195pabpc49992.247ENSMALG00000011017pabpc49892.540Monopterus_albus
ENSELUG00000003195pabpc49771.354MGP_CAROLIEiJ_G0024864-9972.987Mus_caroli
ENSELUG00000003195pabpc49879.789MGP_CAROLIEiJ_G0026435-10095.035Mus_caroli
ENSELUG00000003195pabpc49982.567ENSMUSG00000011257Pabpc49993.976Mus_musculus
ENSELUG00000003195pabpc49979.789MGP_PahariEiJ_G0028765Pabpc410095.745Mus_pahari
ENSELUG00000003195pabpc49869.975MGP_SPRETEiJ_G0027415Pabpc410095.745Mus_spretus
ENSELUG00000003195pabpc49881.089ENSMPUG00000014414-9980.365Mustela_putorius_furo
ENSELUG00000003195pabpc49545.915ENSMPUG00000006836-10045.574Mustela_putorius_furo
ENSELUG00000003195pabpc49882.857ENSMLUG00000012068PABPC49982.428Myotis_lucifugus
ENSELUG00000003195pabpc49983.360ENSNGAG00000018292Pabpc49982.907Nannospalax_galili
ENSELUG00000003195pabpc46495.181ENSNBRG00000010047-7295.181Neolamprologus_brichardi
ENSELUG00000003195pabpc45996.635ENSNBRG00000009708pabpc49896.635Neolamprologus_brichardi
ENSELUG00000003195pabpc49884.177ENSNLEG00000011928PABPC49983.599Nomascus_leucogenys
ENSELUG00000003195pabpc48390.476ENSOPRG00000011984PABPC48690.476Ochotona_princeps
ENSELUG00000003195pabpc45281.429ENSODEG00000013457-10081.429Octodon_degus
ENSELUG00000003195pabpc49883.703ENSODEG00000006592-9983.121Octodon_degus
ENSELUG00000003195pabpc49875.738ENSODEG00000017434-9975.106Octodon_degus
ENSELUG00000003195pabpc410092.019ENSONIG00000008176pabpc49892.834Oreochromis_niloticus
ENSELUG00000003195pabpc49986.593ENSOANG00000010001PABPC49986.169Ornithorhynchus_anatinus
ENSELUG00000003195pabpc49580.818ENSOCUG00000000562PABPC48880.031Oryctolagus_cuniculus
ENSELUG00000003195pabpc49995.077ENSORLG00000017479pabpc49795.077Oryzias_latipes
ENSELUG00000003195pabpc49995.077ENSORLG00020018644pabpc49795.077Oryzias_latipes_hni
ENSELUG00000003195pabpc49995.077ENSORLG00015015042pabpc49795.077Oryzias_latipes_hsok
ENSELUG00000003195pabpc49991.587ENSOMEG00000014410pabpc49892.026Oryzias_melastigma
ENSELUG00000003195pabpc49981.260ENSOGAG00000004067PABPC49981.804Otolemur_garnettii
ENSELUG00000003195pabpc49980.816ENSOARG00000020060PABPC49980.213Ovis_aries
ENSELUG00000003195pabpc49884.019ENSPPAG00000043625PABPC49983.439Pan_paniscus
ENSELUG00000003195pabpc49884.335ENSPPRG00000024727PABPC49983.758Panthera_pardus
ENSELUG00000003195pabpc49884.335ENSPTIG00000005829PABPC49983.758Panthera_tigris_altaica
ENSELUG00000003195pabpc49884.019ENSPTRG00000000573PABPC49983.439Pan_troglodytes
ENSELUG00000003195pabpc49884.177ENSPANG00000009484PABPC49983.599Papio_anubis
ENSELUG00000003195pabpc49992.405ENSPKIG00000025356pabpc49992.144Paramormyrops_kingsleyae
ENSELUG00000003195pabpc49987.421ENSPSIG00000016892PABPC49987.005Pelodiscus_sinensis
ENSELUG00000003195pabpc410086.854ENSPMGG00000009073pabpc49887.580Periophthalmus_magnuspinnatus
ENSELUG00000003195pabpc49883.544ENSPEMG00000023569-9883.121Peromyscus_maniculatus_bairdii
ENSELUG00000003195pabpc49978.615ENSPEMG00000024193-9979.403Peromyscus_maniculatus_bairdii
ENSELUG00000003195pabpc49571.869ENSPMAG00000007885pabpc49970.825Petromyzon_marinus
ENSELUG00000003195pabpc48774.346ENSPMAG00000002836pabpc49975.218Petromyzon_marinus
ENSELUG00000003195pabpc49786.560ENSPCIG00000020674PABPC49992.476Phascolarctos_cinereus
ENSELUG00000003195pabpc410091.706ENSPFOG00000002682pabpc49892.357Poecilia_formosa
ENSELUG00000003195pabpc410091.862ENSPLAG00000010112pabpc49892.516Poecilia_latipinna
ENSELUG00000003195pabpc49892.516ENSPMEG00000019739pabpc49892.516Poecilia_mexicana
ENSELUG00000003195pabpc410092.175ENSPREG00000001589pabpc49892.834Poecilia_reticulata
ENSELUG00000003195pabpc49880.787ENSPPYG00000001506PABPC49980.061Pongo_abelii
ENSELUG00000003195pabpc49976.284ENSPCAG00000003341PABPC49975.647Procavia_capensis
ENSELUG00000003195pabpc49883.412ENSPCOG00000023725-9983.466Propithecus_coquereli
ENSELUG00000003195pabpc49868.134ENSPCOG00000025882-9769.159Propithecus_coquereli
ENSELUG00000003195pabpc49779.933ENSPVAG00000002187PABPC49979.293Pteropus_vampyrus
ENSELUG00000003195pabpc410092.175ENSPNYG00000006134pabpc49892.994Pundamilia_nyererei
ENSELUG00000003195pabpc49991.837ENSPNAG00000024355pabpc49992.516Pygocentrus_nattereri
ENSELUG00000003195pabpc49978.802ENSRNOG00000028592AABR07035074.19979.375Rattus_norvegicus
ENSELUG00000003195pabpc49980.952ENSRNOG00000015642Pabpc49981.562Rattus_norvegicus
ENSELUG00000003195pabpc49884.177ENSRBIG00000039761PABPC49983.599Rhinopithecus_bieti
ENSELUG00000003195pabpc49884.177ENSRROG00000033355PABPC49983.599Rhinopithecus_roxellana
ENSELUG00000003195pabpc49884.019ENSSBOG00000026193PABPC49983.439Saimiri_boliviensis_boliviensis
ENSELUG00000003195pabpc49786.400ENSSHAG00000018139PABPC49985.578Sarcophilus_harrisii
ENSELUG00000003195pabpc49990.701ENSSFOG00015023514pabpc49891.362Scleropages_formosus
ENSELUG00000003195pabpc410091.236ENSSMAG00000009007pabpc49892.344Scophthalmus_maximus
ENSELUG00000003195pabpc49992.381ENSSDUG00000012683pabpc49892.675Seriola_dumerili
ENSELUG00000003195pabpc49992.381ENSSLDG00000013025pabpc49892.675Seriola_lalandi_dorsalis
ENSELUG00000003195pabpc49974.699ENSSARG00000000310PABPC49973.939Sorex_araneus
ENSELUG00000003195pabpc49986.435ENSSPUG00000003204PABPC49986.010Sphenodon_punctatus
ENSELUG00000003195pabpc49992.540ENSSPAG00000009252pabpc49892.834Stegastes_partitus
ENSELUG00000003195pabpc48944.714ENSSSCG00000036170-9642.701Sus_scrofa
ENSELUG00000003195pabpc49984.202ENSSSCG00000003660-9983.758Sus_scrofa
ENSELUG00000003195pabpc49981.737ENSTGUG00000001266PABPC49982.326Taeniopygia_guttata
ENSELUG00000003195pabpc410090.923ENSTRUG00000005907pabpc49891.720Takifugu_rubripes
ENSELUG00000003195pabpc410084.194ENSTNIG00000016902pabpc49885.032Tetraodon_nigroviridis
ENSELUG00000003195pabpc49869.900ENSTBEG00000009035PABPC49969.192Tupaia_belangeri
ENSELUG00000003195pabpc49860.177ENSTTRG00000014340PABPC49968.350Tursiops_truncatus
ENSELUG00000003195pabpc49884.335ENSUAMG00000000303PABPC49983.758Ursus_americanus
ENSELUG00000003195pabpc49988.636ENSUMAG00000019585PABPC49891.041Ursus_maritimus
ENSELUG00000003195pabpc47869.527ENSVPAG00000010041PABPC47269.733Vicugna_pacos
ENSELUG00000003195pabpc49884.335ENSVVUG00000005215PABPC49983.758Vulpes_vulpes
ENSELUG00000003195pabpc49983.019ENSXETG00000010946pabpc49982.409Xenopus_tropicalis
ENSELUG00000003195pabpc46695.266ENSXETG00000027221-10095.266Xenopus_tropicalis
ENSELUG00000003195pabpc49994.723ENSXCOG00000013190pabpc49692.925Xiphophorus_couchianus
ENSELUG00000003195pabpc410092.019ENSXMAG00000019007pabpc49892.675Xiphophorus_maculatus

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