EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000003395 (Gene tree)
Gene ID: 105023618
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 8886 bases
Position: chrLG15:7855539-7864424
Accession: 105023618
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000001977	SRP54	PF00448.22	1.5e-77	1	1
ENSELUP00000001999	SRP54	PF00448.22	1.5e-77	1	1
ENSELUP00000001977	SRP54_N	PF02881.19	2.9e-19	1	1
ENSELUP00000001999	SRP54_N	PF02881.19	2.9e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000016463	-	2389	-	ENSELUP00000001999	504 (aa)	-	UPI0005761461
ENSELUT00000016487	-	2285	XM_010892964	ENSELUP00000001977	504 (aa)	XP_010891266	UPI0005761461

Gene Model

Click here to download ENSELUG00000003395's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000003395's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000003395	srp54	100	95.238	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSELUG00000003395	srp54	100	98.016	ENSAPOG00000011314	srp54	100	98.016	Acanthochromis_polyacanthus
ENSELUG00000003395	srp54	100	95.238	ENSAMEG00000015544	SRP54	100	95.238	Ailuropoda_melanoleuca
ENSELUG00000003395	srp54	89	96.214	ENSACIG00000022831	srp54	97	96.214	Amphilophus_citrinellus
ENSELUG00000003395	srp54	100	98.016	ENSAOCG00000019401	srp54	100	98.016	Amphiprion_ocellaris
ENSELUG00000003395	srp54	100	98.016	ENSAPEG00000001977	srp54	100	98.016	Amphiprion_percula
ENSELUG00000003395	srp54	100	98.016	ENSATEG00000013877	srp54	100	98.016	Anabas_testudineus
ENSELUG00000003395	srp54	94	94.515	ENSAPLG00000010125	SRP54	95	94.515	Anas_platyrhynchos
ENSELUG00000003395	srp54	100	94.643	ENSACAG00000002103	-	100	94.643	Anolis_carolinensis
ENSELUG00000003395	srp54	86	91.705	ENSACAG00000010631	-	100	91.705	Anolis_carolinensis
ENSELUG00000003395	srp54	65	78.852	ENSACAG00000001124	-	100	78.852	Anolis_carolinensis
ENSELUG00000003395	srp54	100	95.238	ENSANAG00000022133	SRP54	100	95.238	Aotus_nancymaae
ENSELUG00000003395	srp54	100	97.817	ENSACLG00000015866	srp54	100	97.817	Astatotilapia_calliptera
ENSELUG00000003395	srp54	100	97.421	ENSAMXG00000032669	SRP54	100	97.421	Astyanax_mexicanus
ENSELUG00000003395	srp54	100	95.238	ENSBTAG00000019085	SRP54	100	95.238	Bos_taurus
ENSELUG00000003395	srp54	98	73.092	WBGene00009012	F21D5.7	100	73.092	Caenorhabditis_elegans
ENSELUG00000003395	srp54	100	95.238	ENSCJAG00000006581	SRP54	100	95.238	Callithrix_jacchus
ENSELUG00000003395	srp54	100	95.238	ENSCAFG00000013331	SRP54	100	95.238	Canis_familiaris
ENSELUG00000003395	srp54	100	95.238	ENSCAFG00020023427	SRP54	100	95.238	Canis_lupus_dingo
ENSELUG00000003395	srp54	100	95.238	ENSCHIG00000026345	SRP54	100	95.238	Capra_hircus
ENSELUG00000003395	srp54	100	95.040	ENSTSYG00000002680	-	100	95.040	Carlito_syrichta
ENSELUG00000003395	srp54	94	84.000	ENSTSYG00000035333	-	93	84.000	Carlito_syrichta
ENSELUG00000003395	srp54	94	61.633	ENSCAPG00000008780	SRP54	100	61.633	Cavia_aperea
ENSELUG00000003395	srp54	100	94.841	ENSCPOG00000003691	SRP54	100	94.841	Cavia_porcellus
ENSELUG00000003395	srp54	90	94.762	ENSCCAG00000024179	SRP54	100	94.988	Cebus_capucinus
ENSELUG00000003395	srp54	100	95.238	ENSCATG00000034083	SRP54	100	95.238	Cercocebus_atys
ENSELUG00000003395	srp54	100	95.238	ENSCLAG00000015076	SRP54	100	95.238	Chinchilla_lanigera
ENSELUG00000003395	srp54	100	95.238	ENSCSAG00000015575	SRP54	100	95.238	Chlorocebus_sabaeus
ENSELUG00000003395	srp54	95	84.200	ENSCHOG00000008986	SRP54	100	84.200	Choloepus_hoffmanni
ENSELUG00000003395	srp54	100	95.238	ENSCPBG00000026195	SRP54	100	95.238	Chrysemys_picta_bellii
ENSELUG00000003395	srp54	100	82.341	ENSCING00000007380	-	100	82.341	Ciona_intestinalis
ENSELUG00000003395	srp54	100	95.238	ENSCANG00000028532	SRP54	100	95.238	Colobus_angolensis_palliatus
ENSELUG00000003395	srp54	100	95.238	ENSCGRG00001009525	-	100	95.238	Cricetulus_griseus_chok1gshd
ENSELUG00000003395	srp54	82	90.215	ENSCGRG00000009453	-	95	90.215	Cricetulus_griseus_crigri
ENSELUG00000003395	srp54	100	97.421	ENSCSEG00000012392	srp54	100	97.421	Cynoglossus_semilaevis
ENSELUG00000003395	srp54	100	98.016	ENSCVAG00000010395	srp54	100	98.016	Cyprinodon_variegatus
ENSELUG00000003395	srp54	100	98.214	ENSDARG00000098367	srp54	100	98.214	Danio_rerio
ENSELUG00000003395	srp54	100	95.238	ENSDNOG00000032525	SRP54	100	95.238	Dasypus_novemcinctus
ENSELUG00000003395	srp54	89	79.867	ENSDORG00000005159	-	98	79.867	Dipodomys_ordii
ENSELUG00000003395	srp54	96	79.381	FBgn0010747	Srp54k	98	78.916	Drosophila_melanogaster
ENSELUG00000003395	srp54	100	94.048	ENSETEG00000016307	-	100	94.048	Echinops_telfairi
ENSELUG00000003395	srp54	83	56.220	ENSETEG00000012102	-	99	56.220	Echinops_telfairi
ENSELUG00000003395	srp54	100	87.698	ENSEBUG00000009437	-	100	87.698	Eptatretus_burgeri
ENSELUG00000003395	srp54	100	95.238	ENSEASG00005002057	SRP54	100	95.238	Equus_asinus_asinus
ENSELUG00000003395	srp54	99	94.980	ENSECAG00000018042	SRP54	98	94.980	Equus_caballus
ENSELUG00000003395	srp54	100	79.563	ENSEEUG00000001511	SRP54	100	79.563	Erinaceus_europaeus
ENSELUG00000003395	srp54	100	95.040	ENSFCAG00000032033	SRP54	100	95.040	Felis_catus
ENSELUG00000003395	srp54	100	94.841	ENSFALG00000005995	SRP54	100	94.841	Ficedula_albicollis
ENSELUG00000003395	srp54	100	95.238	ENSFDAG00000016767	SRP54	100	95.238	Fukomys_damarensis
ENSELUG00000003395	srp54	100	97.619	ENSFHEG00000004263	srp54	100	97.619	Fundulus_heteroclitus
ENSELUG00000003395	srp54	95	92.887	ENSGMOG00000011391	srp54	100	92.887	Gadus_morhua
ENSELUG00000003395	srp54	100	94.841	ENSGALG00000023135	SRP54	100	94.841	Gallus_gallus
ENSELUG00000003395	srp54	100	98.214	ENSGAFG00000011586	srp54	100	98.214	Gambusia_affinis
ENSELUG00000003395	srp54	100	97.222	ENSGACG00000004181	srp54	100	97.222	Gasterosteus_aculeatus
ENSELUG00000003395	srp54	100	95.238	ENSGAGG00000014766	SRP54	100	95.238	Gopherus_agassizii
ENSELUG00000003395	srp54	100	95.238	ENSGGOG00000002926	SRP54	100	95.238	Gorilla_gorilla
ENSELUG00000003395	srp54	100	97.817	ENSHBUG00000005678	srp54	100	97.817	Haplochromis_burtoni
ENSELUG00000003395	srp54	100	95.238	ENSHGLG00000002850	SRP54	100	95.238	Heterocephalus_glaber_female
ENSELUG00000003395	srp54	100	95.238	ENSHGLG00100005263	SRP54	100	95.238	Heterocephalus_glaber_male
ENSELUG00000003395	srp54	100	65.743	ENSHGLG00100007281	-	100	65.743	Heterocephalus_glaber_male
ENSELUG00000003395	srp54	100	95.833	ENSHCOG00000021127	srp54	100	95.833	Hippocampus_comes
ENSELUG00000003395	srp54	100	97.421	ENSIPUG00000001420	srp54	100	97.421	Ictalurus_punctatus
ENSELUG00000003395	srp54	100	95.238	ENSSTOG00000016023	SRP54	100	95.238	Ictidomys_tridecemlineatus
ENSELUG00000003395	srp54	87	73.409	ENSJJAG00000016404	-	100	73.409	Jaculus_jaculus
ENSELUG00000003395	srp54	100	90.476	ENSJJAG00000013417	-	100	90.476	Jaculus_jaculus
ENSELUG00000003395	srp54	100	97.619	ENSKMAG00000007707	srp54	100	97.619	Kryptolebias_marmoratus
ENSELUG00000003395	srp54	100	98.016	ENSLBEG00000021122	srp54	100	98.016	Labrus_bergylta
ENSELUG00000003395	srp54	100	98.016	ENSLBEG00000018690	srp54	100	98.016	Labrus_bergylta
ENSELUG00000003395	srp54	100	95.635	ENSLACG00000017890	SRP54	100	95.635	Latimeria_chalumnae
ENSELUG00000003395	srp54	100	97.421	ENSLOCG00000009440	srp54	100	97.421	Lepisosteus_oculatus
ENSELUG00000003395	srp54	100	95.238	ENSLAFG00000012007	SRP54	100	95.238	Loxodonta_africana
ENSELUG00000003395	srp54	100	95.238	ENSMFAG00000044371	SRP54	100	95.238	Macaca_fascicularis
ENSELUG00000003395	srp54	100	95.238	ENSMMUG00000015073	FAM177A1	100	95.238	Macaca_mulatta
ENSELUG00000003395	srp54	100	95.238	ENSMNEG00000006947	SRP54	100	95.238	Macaca_nemestrina
ENSELUG00000003395	srp54	100	95.238	ENSMLEG00000042251	SRP54	100	95.238	Mandrillus_leucophaeus
ENSELUG00000003395	srp54	100	97.817	ENSMAMG00000004803	srp54	100	97.817	Mastacembelus_armatus
ENSELUG00000003395	srp54	100	97.817	ENSMZEG00005027528	srp54	100	97.817	Maylandia_zebra
ENSELUG00000003395	srp54	100	90.316	ENSMGAG00000012481	SRP54	100	90.316	Meleagris_gallopavo
ENSELUG00000003395	srp54	100	95.437	ENSMAUG00000014447	-	100	95.437	Mesocricetus_auratus
ENSELUG00000003395	srp54	100	95.238	ENSMICG00000010270	SRP54	100	95.238	Microcebus_murinus
ENSELUG00000003395	srp54	87	95.000	ENSMOCG00000000948	-	100	95.000	Microtus_ochrogaster
ENSELUG00000003395	srp54	90	95.154	ENSMMOG00000020303	srp54	99	95.154	Mola_mola
ENSELUG00000003395	srp54	100	95.238	ENSMODG00000023150	-	100	95.238	Monodelphis_domestica
ENSELUG00000003395	srp54	100	95.238	ENSMODG00000012925	-	100	95.238	Monodelphis_domestica
ENSELUG00000003395	srp54	88	97.065	ENSMALG00000009163	srp54	98	97.065	Monopterus_albus
ENSELUG00000003395	srp54	100	95.437	MGP_CAROLIEiJ_G0017754	-	100	95.437	Mus_caroli
ENSELUG00000003395	srp54	100	95.437	ENSMUSG00000073079	Srp54a	100	96.364	Mus_musculus
ENSELUG00000003395	srp54	100	95.437	ENSMUSG00000112449	Srp54b	100	95.437	Mus_musculus
ENSELUG00000003395	srp54	100	94.643	ENSMUSG00000079108	Srp54c	100	94.643	Mus_musculus
ENSELUG00000003395	srp54	100	95.437	MGP_PahariEiJ_G0029510	-	100	95.437	Mus_pahari
ENSELUG00000003395	srp54	100	95.238	ENSMPUG00000016302	SRP54	100	95.238	Mustela_putorius_furo
ENSELUG00000003395	srp54	100	94.643	ENSMLUG00000008958	SRP54	100	94.643	Myotis_lucifugus
ENSELUG00000003395	srp54	100	86.310	ENSNGAG00000019806	-	100	86.310	Nannospalax_galili
ENSELUG00000003395	srp54	87	97.500	ENSNBRG00000006000	srp54	100	97.500	Neolamprologus_brichardi
ENSELUG00000003395	srp54	100	95.238	ENSNLEG00000003496	SRP54	100	95.238	Nomascus_leucogenys
ENSELUG00000003395	srp54	67	98.214	ENSMEUG00000000138	-	76	98.214	Notamacropus_eugenii
ENSELUG00000003395	srp54	58	96.721	ENSOPRG00000014502	-	60	96.721	Ochotona_princeps
ENSELUG00000003395	srp54	100	95.238	ENSODEG00000004865	SRP54	100	95.238	Octodon_degus
ENSELUG00000003395	srp54	100	97.817	ENSONIG00000011768	srp54	100	97.817	Oreochromis_niloticus
ENSELUG00000003395	srp54	100	95.238	ENSOANG00000014051	SRP54	100	95.238	Ornithorhynchus_anatinus
ENSELUG00000003395	srp54	100	94.643	ENSOCUG00000007838	SRP54	100	94.643	Oryctolagus_cuniculus
ENSELUG00000003395	srp54	100	97.619	ENSORLG00000010027	srp54	100	97.619	Oryzias_latipes
ENSELUG00000003395	srp54	100	97.619	ENSORLG00020001878	srp54	100	97.619	Oryzias_latipes_hni
ENSELUG00000003395	srp54	100	97.619	ENSORLG00015021866	srp54	100	97.619	Oryzias_latipes_hsok
ENSELUG00000003395	srp54	100	97.421	ENSOMEG00000020952	srp54	100	97.421	Oryzias_melastigma
ENSELUG00000003395	srp54	100	95.238	ENSOGAG00000012188	SRP54	100	95.238	Otolemur_garnettii
ENSELUG00000003395	srp54	100	95.238	ENSOARG00000007160	SRP54	100	95.238	Ovis_aries
ENSELUG00000003395	srp54	100	95.238	ENSPPAG00000017434	SRP54	100	95.238	Pan_paniscus
ENSELUG00000003395	srp54	100	94.246	ENSPPRG00000014047	SRP54	100	94.246	Panthera_pardus
ENSELUG00000003395	srp54	100	95.040	ENSPTIG00000000744	SRP54	96	95.040	Panthera_tigris_altaica
ENSELUG00000003395	srp54	100	95.238	ENSPTRG00000006259	FAM177A1	100	95.238	Pan_troglodytes
ENSELUG00000003395	srp54	100	95.238	ENSPANG00000023853	SRP54	100	95.238	Papio_anubis
ENSELUG00000003395	srp54	100	97.817	ENSPKIG00000001953	srp54	100	97.817	Paramormyrops_kingsleyae
ENSELUG00000003395	srp54	100	95.040	ENSPSIG00000006476	SRP54	100	95.040	Pelodiscus_sinensis
ENSELUG00000003395	srp54	91	94.783	ENSPMGG00000004127	srp54	99	94.783	Periophthalmus_magnuspinnatus
ENSELUG00000003395	srp54	100	83.730	ENSPEMG00000019634	-	100	83.730	Peromyscus_maniculatus_bairdii
ENSELUG00000003395	srp54	100	89.881	ENSPMAG00000006078	-	100	89.881	Petromyzon_marinus
ENSELUG00000003395	srp54	100	95.238	ENSPCIG00000016175	SRP54	100	95.238	Phascolarctos_cinereus
ENSELUG00000003395	srp54	100	98.214	ENSPFOG00000008870	srp54	100	98.214	Poecilia_formosa
ENSELUG00000003395	srp54	100	98.214	ENSPLAG00000009889	srp54	100	98.214	Poecilia_latipinna
ENSELUG00000003395	srp54	100	98.214	ENSPMEG00000008601	srp54	100	98.214	Poecilia_mexicana
ENSELUG00000003395	srp54	100	98.214	ENSPREG00000004505	srp54	100	98.214	Poecilia_reticulata
ENSELUG00000003395	srp54	100	90.476	ENSPPYG00000005739	SRP54	100	90.476	Pongo_abelii
ENSELUG00000003395	srp54	100	91.667	ENSPCAG00000006268	SRP54	100	91.667	Procavia_capensis
ENSELUG00000003395	srp54	100	93.267	ENSPCOG00000022473	SRP54	100	93.267	Propithecus_coquereli
ENSELUG00000003395	srp54	63	96.809	ENSPVAG00000010056	SRP54	82	96.809	Pteropus_vampyrus
ENSELUG00000003395	srp54	100	97.817	ENSPNYG00000009717	srp54	100	97.817	Pundamilia_nyererei
ENSELUG00000003395	srp54	100	97.619	ENSPNAG00000008544	srp54	100	97.619	Pygocentrus_nattereri
ENSELUG00000003395	srp54	100	95.238	ENSRNOG00000032776	Srp54a	100	95.238	Rattus_norvegicus
ENSELUG00000003395	srp54	100	95.238	ENSRROG00000041292	SRP54	100	95.238	Rhinopithecus_roxellana
ENSELUG00000003395	srp54	86	51.474	YPR088C	SRP54	95	47.126	Saccharomyces_cerevisiae
ENSELUG00000003395	srp54	94	94.937	ENSSBOG00000035145	SRP54	100	94.937	Saimiri_boliviensis_boliviensis
ENSELUG00000003395	srp54	68	94.169	ENSSHAG00000000671	SRP54	100	94.169	Sarcophilus_harrisii
ENSELUG00000003395	srp54	100	97.817	ENSSFOG00015013920	srp54	100	97.817	Scleropages_formosus
ENSELUG00000003395	srp54	100	91.760	ENSSMAG00000002441	srp54	100	91.760	Scophthalmus_maximus
ENSELUG00000003395	srp54	100	97.421	ENSSDUG00000018586	srp54	100	97.421	Seriola_dumerili
ENSELUG00000003395	srp54	100	97.619	ENSSLDG00000010476	srp54	100	97.619	Seriola_lalandi_dorsalis
ENSELUG00000003395	srp54	100	95.238	ENSSARG00000002744	SRP54	100	95.238	Sorex_araneus
ENSELUG00000003395	srp54	100	95.238	ENSSPUG00000013101	SRP54	100	95.238	Sphenodon_punctatus
ENSELUG00000003395	srp54	100	98.016	ENSSPAG00000002354	srp54	100	98.016	Stegastes_partitus
ENSELUG00000003395	srp54	100	95.238	ENSSSCG00000001955	SRP54	100	95.238	Sus_scrofa
ENSELUG00000003395	srp54	94	94.515	ENSTGUG00000011945	-	95	94.515	Taeniopygia_guttata
ENSELUG00000003395	srp54	100	97.024	ENSTRUG00000007057	srp54	100	97.024	Takifugu_rubripes
ENSELUG00000003395	srp54	100	96.429	ENSTNIG00000002589	srp54	100	96.429	Tetraodon_nigroviridis
ENSELUG00000003395	srp54	89	86.353	ENSTBEG00000011409	SRP54	100	86.353	Tupaia_belangeri
ENSELUG00000003395	srp54	100	86.310	ENSTTRG00000000928	SRP54	100	86.310	Tursiops_truncatus
ENSELUG00000003395	srp54	52	95.802	ENSUAMG00000012385	SRP54	100	95.802	Ursus_americanus
ENSELUG00000003395	srp54	100	95.238	ENSUMAG00000011234	SRP54	100	95.238	Ursus_maritimus
ENSELUG00000003395	srp54	94	94.726	ENSVPAG00000005668	SRP54	100	94.726	Vicugna_pacos
ENSELUG00000003395	srp54	100	95.238	ENSVVUG00000019962	SRP54	100	95.238	Vulpes_vulpes
ENSELUG00000003395	srp54	100	81.262	ENSXETG00000012290	srp54	100	81.262	Xenopus_tropicalis
ENSELUG00000003395	srp54	88	97.968	ENSXCOG00000004658	srp54	96	97.968	Xiphophorus_couchianus
ENSELUG00000003395	srp54	100	98.214	ENSXMAG00000018315	srp54	100	98.214	Xiphophorus_maculatus