EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSELUG00000003614 (Gene tree)
Gene ID
105016474
Gene Symbol
pabpc1a
Alias
-
Full Name
polyadenylate-binding protein 1
Gene Type
protein_coding
Species
Esox_lucius
Status
putative
Strand
Plus strand
Length
5971 bases
Position
chrLG16:26652523-26658493
Accession
105016474
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSELUP00000002246PABPPF00658.187e-3211
ENSELUP00000002253PABPPF00658.187e-3211
ENSELUP00000002246RRM_1PF00076.221.2e-8814
ENSELUP00000002246RRM_1PF00076.221.2e-8824
ENSELUP00000002246RRM_1PF00076.221.2e-8834
ENSELUP00000002246RRM_1PF00076.221.2e-8844
ENSELUP00000002253RRM_1PF00076.221.2e-8814
ENSELUP00000002253RRM_1PF00076.221.2e-8824
ENSELUP00000002253RRM_1PF00076.221.2e-8834
ENSELUP00000002253RRM_1PF00076.221.2e-8844
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSELUT00000016039-3490-ENSELUP00000002246632 (aa)-UPI00057756AE
ENSELUT00000016025-3605XM_010880346ENSELUP00000002253632 (aa)XP_010878648UPI00057756AE
Gene Model
Click here to download ENSELUG00000003614's gene model file
Pathways
Pathway IDPathway NameSource
els03013RNA transportKEGG
els03015mRNA surveillance pathwayKEGG
els03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000003614's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSELUG00000003614pabpc1a5836.000ENSELUG00000012561rbm196236.000
ENSELUG00000003614pabpc1a9875.637ENSELUG00000003195pabpc49776.115
ENSELUG00000003614pabpc1a5738.554ENSELUG00000018986celf5a7436.559
ENSELUG00000003614pabpc1a10089.623ENSELUG00000015062-9989.623
ENSELUG00000003614pabpc1a5937.349ENSELUG00000023043elavl39237.349
ENSELUG00000003614pabpc1a5738.251ENSELUG00000012876sf3b45335.426
ENSELUG00000003614pabpc1a5733.333ENSELUG00000008024elavl1a8931.788
ENSELUG00000003614pabpc1a5936.145ENSELUG00000008025elavl48036.145
ENSELUG00000003614pabpc1a5036.986ENSELUG00000013477celf3b6036.986
ENSELUG00000003614pabpc1a5630.814ENSELUG00000020089-5730.814
ENSELUG00000003614pabpc1a6059.402ENSELUG00000005389-9759.402
ENSELUG00000003614pabpc1a6936.986ENSELUG00000006121celf3a9736.986
ENSELUG00000003614pabpc1a5937.349ENSELUG00000010026ELAVL28537.349
ENSELUG00000003614pabpc1a5930.508ENSELUG00000006033ncl5232.768
ENSELUG00000003614pabpc1a9970.533ENSELUG00000001811pabpc1l9970.533
ENSELUG00000003614pabpc1a6356.495ENSELUG00000005247-8856.495
ENSELUG00000003614pabpc1a6033.684ENSELUG00000007892rbms2b5133.684
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSELUG00000003614pabpc1a5879.592ENSG00000186288PABPC1L2A9879.592Homo_sapiens
ENSELUG00000003614pabpc1a5879.592ENSG00000184388PABPC1L2B9879.592Homo_sapiens
ENSELUG00000003614pabpc1a10091.667ENSAPOG00000017776pabpc1b9991.824Acanthochromis_polyacanthus
ENSELUG00000003614pabpc1a10094.182ENSAPOG00000015105pabpc1a9994.182Acanthochromis_polyacanthus
ENSELUG00000003614pabpc1a6079.592ENSAMEG00000019441-9879.592Ailuropoda_melanoleuca
ENSELUG00000003614pabpc1a10086.813ENSACIG00000018366pabpc1b9986.813Amphilophus_citrinellus
ENSELUG00000003614pabpc1a10094.025ENSACIG00000004685pabpc1a9994.025Amphilophus_citrinellus
ENSELUG00000003614pabpc1a10091.509ENSAOCG00000019839pabpc1b9991.509Amphiprion_ocellaris
ENSELUG00000003614pabpc1a10094.497ENSAOCG00000011656pabpc1a9994.497Amphiprion_ocellaris
ENSELUG00000003614pabpc1a10091.509ENSAPEG00000010435pabpc1b9991.509Amphiprion_percula
ENSELUG00000003614pabpc1a10094.497ENSAPEG00000006963pabpc1a9994.497Amphiprion_percula
ENSELUG00000003614pabpc1a10094.182ENSATEG00000024852pabpc1a9994.182Anabas_testudineus
ENSELUG00000003614pabpc1a10090.895ENSATEG00000012917pabpc1b9991.209Anabas_testudineus
ENSELUG00000003614pabpc1a5879.592ENSANAG00000019429-9879.592Aotus_nancymaae
ENSELUG00000003614pabpc1a5879.592ENSANAG00000019431-9879.592Aotus_nancymaae
ENSELUG00000003614pabpc1a10090.409ENSACLG00000014335pabpc1b9990.566Astatotilapia_calliptera
ENSELUG00000003614pabpc1a10093.868ENSACLG00000009399pabpc1a9993.868Astatotilapia_calliptera
ENSELUG00000003614pabpc1a10091.824ENSAMXG00000008599pabpc1b9991.824Astyanax_mexicanus
ENSELUG00000003614pabpc1a6078.537ENSBTAG00000050902-9878.537Bos_taurus
ENSELUG00000003614pabpc1a6076.555ENSBTAG00000052491-9876.555Bos_taurus
ENSELUG00000003614pabpc1a5879.592ENSCJAG00000041326-9879.592Callithrix_jacchus
ENSELUG00000003614pabpc1a6078.537ENSCAFG00020002052-9878.537Canis_lupus_dingo
ENSELUG00000003614pabpc1a5879.592ENSCHIG00000011138-9879.592Capra_hircus
ENSELUG00000003614pabpc1a5879.592ENSCHIG00000006283-9879.592Capra_hircus
ENSELUG00000003614pabpc1a6079.592ENSTSYG00000001775-9879.592Carlito_syrichta
ENSELUG00000003614pabpc1a6079.592ENSCPOG00000009525-9879.592Cavia_porcellus
ENSELUG00000003614pabpc1a5879.592ENSCCAG00000031524-9879.592Cebus_capucinus
ENSELUG00000003614pabpc1a5879.592ENSCATG00000043125-9879.592Cercocebus_atys
ENSELUG00000003614pabpc1a5879.592ENSCATG00000042826-9879.592Cercocebus_atys
ENSELUG00000003614pabpc1a6077.551ENSCLAG00000017409-9877.551Chinchilla_lanigera
ENSELUG00000003614pabpc1a6077.551ENSCLAG00000017412-9877.551Chinchilla_lanigera
ENSELUG00000003614pabpc1a6079.592ENSCSAG00000000102-9879.592Chlorocebus_sabaeus
ENSELUG00000003614pabpc1a5879.121ENSCGRG00001023387-9676.923Cricetulus_griseus_chok1gshd
ENSELUG00000003614pabpc1a10089.308ENSCSEG00000015241-9989.308Cynoglossus_semilaevis
ENSELUG00000003614pabpc1a9993.849ENSCSEG00000013324pabpc1a10093.849Cynoglossus_semilaevis
ENSELUG00000003614pabpc1a10094.025ENSCVAG00000021872pabpc1a9994.025Cyprinodon_variegatus
ENSELUG00000003614pabpc1a10088.697ENSCVAG00000005489pabpc1b9989.011Cyprinodon_variegatus
ENSELUG00000003614pabpc1a10091.824ENSDARG00000017219pabpc1a9991.824Danio_rerio
ENSELUG00000003614pabpc1a10090.566ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSELUG00000003614pabpc1a6079.894ENSDNOG00000030926-9878.061Dasypus_novemcinctus
ENSELUG00000003614pabpc1a5877.041ENSDORG00000011362-9877.041Dipodomys_ordii
ENSELUG00000003614pabpc1a6078.155ENSEASG00005010399-9878.155Equus_asinus_asinus
ENSELUG00000003614pabpc1a6078.155ENSECAG00000002620-9878.155Equus_caballus
ENSELUG00000003614pabpc1a6075.000ENSEEUG00000008203-9875.000Erinaceus_europaeus
ENSELUG00000003614pabpc1a6079.592ENSFCAG00000039701-9879.592Felis_catus
ENSELUG00000003614pabpc1a6079.592ENSFDAG00000005484-9879.592Fukomys_damarensis
ENSELUG00000003614pabpc1a10093.711ENSFHEG00000018979pabpc1a9993.711Fundulus_heteroclitus
ENSELUG00000003614pabpc1a10089.780ENSFHEG00000008186pabpc1b9989.937Fundulus_heteroclitus
ENSELUG00000003614pabpc1a10082.271ENSGMOG00000002448-9982.271Gadus_morhua
ENSELUG00000003614pabpc1a10092.724ENSGMOG00000013448pabpc1a9993.344Gadus_morhua
ENSELUG00000003614pabpc1a10093.553ENSGAFG00000019750pabpc1a9993.553Gambusia_affinis
ENSELUG00000003614pabpc1a10090.566ENSGAFG00000010193pabpc1b9990.723Gambusia_affinis
ENSELUG00000003614pabpc1a10094.182ENSGACG00000003572pabpc1a9994.182Gasterosteus_aculeatus
ENSELUG00000003614pabpc1a10088.785ENSGACG00000003771pabpc1b9989.114Gasterosteus_aculeatus
ENSELUG00000003614pabpc1a5879.592ENSGGOG00000038606-9879.592Gorilla_gorilla
ENSELUG00000003614pabpc1a5879.592ENSGGOG00000043933-9879.592Gorilla_gorilla
ENSELUG00000003614pabpc1a10090.409ENSHBUG00000002075pabpc1b9990.566Haplochromis_burtoni
ENSELUG00000003614pabpc1a10093.868ENSHBUG00000020487pabpc1a9993.868Haplochromis_burtoni
ENSELUG00000003614pabpc1a6078.571ENSHGLG00000019668-9878.571Heterocephalus_glaber_female
ENSELUG00000003614pabpc1a6078.571ENSHGLG00000019762-9878.571Heterocephalus_glaber_female
ENSELUG00000003614pabpc1a6078.571ENSHGLG00100020854-9878.571Heterocephalus_glaber_male
ENSELUG00000003614pabpc1a8782.609ENSHCOG00000003175pabpc1b9970.128Hippocampus_comes
ENSELUG00000003614pabpc1a10094.025ENSHCOG00000013502pabpc1a9994.025Hippocampus_comes
ENSELUG00000003614pabpc1a10089.731ENSIPUG00000008848pabpc1a9989.731Ictalurus_punctatus
ENSELUG00000003614pabpc1a10085.039ENSIPUG00000010791-9985.039Ictalurus_punctatus
ENSELUG00000003614pabpc1a7554.792ENSIPUG00000021244-6853.069Ictalurus_punctatus
ENSELUG00000003614pabpc1a7652.857ENSIPUG00000018724-7952.857Ictalurus_punctatus
ENSELUG00000003614pabpc1a6079.082ENSSTOG00000022096-9879.082Ictidomys_tridecemlineatus
ENSELUG00000003614pabpc1a6079.082ENSSTOG00000026028-9879.082Ictidomys_tridecemlineatus
ENSELUG00000003614pabpc1a5878.061ENSJJAG00000007037-9878.061Jaculus_jaculus
ENSELUG00000003614pabpc1a10089.274ENSKMAG00000008049pabpc1b9989.432Kryptolebias_marmoratus
ENSELUG00000003614pabpc1a10094.182ENSKMAG00000000605pabpc1a9994.182Kryptolebias_marmoratus
ENSELUG00000003614pabpc1a10090.723ENSLBEG00000026845pabpc1b9990.881Labrus_bergylta
ENSELUG00000003614pabpc1a10094.182ENSLBEG00000024002-9994.182Labrus_bergylta
ENSELUG00000003614pabpc1a6078.462ENSLAFG00000023096-9878.462Loxodonta_africana
ENSELUG00000003614pabpc1a5879.188ENSMFAG00000028878-9879.188Macaca_fascicularis
ENSELUG00000003614pabpc1a5879.592ENSMMUG00000037681-9879.592Macaca_mulatta
ENSELUG00000003614pabpc1a5879.592ENSMMUG00000039929-9879.592Macaca_mulatta
ENSELUG00000003614pabpc1a5879.592ENSMMUG00000009740-9879.592Macaca_mulatta
ENSELUG00000003614pabpc1a5879.592ENSMNEG00000037732-9879.592Macaca_nemestrina
ENSELUG00000003614pabpc1a5879.592ENSMLEG00000027495-9879.592Mandrillus_leucophaeus
ENSELUG00000003614pabpc1a10094.182ENSMAMG00000004502-9994.182Mastacembelus_armatus
ENSELUG00000003614pabpc1a10090.723ENSMAMG00000014610pabpc1b9990.881Mastacembelus_armatus
ENSELUG00000003614pabpc1a10090.409ENSMZEG00005026745pabpc1b9990.566Maylandia_zebra
ENSELUG00000003614pabpc1a10093.868ENSMZEG00005025416pabpc1a9993.868Maylandia_zebra
ENSELUG00000003614pabpc1a5879.592ENSMICG00000047642-9879.592Microcebus_murinus
ENSELUG00000003614pabpc1a10085.512ENSMMOG00000018009pabpc1b9985.669Mola_mola
ENSELUG00000003614pabpc1a10092.980ENSMMOG00000018044pabpc1a9993.379Mola_mola
ENSELUG00000003614pabpc1a9873.525ENSMODG00000013156-9873.600Monodelphis_domestica
ENSELUG00000003614pabpc1a9966.038ENSMODG00000015024-9966.038Monodelphis_domestica
ENSELUG00000003614pabpc1a10084.700ENSMALG00000006066pabpc1b9986.120Monopterus_albus
ENSELUG00000003614pabpc1a10092.767ENSMALG00000013020-9993.868Monopterus_albus
ENSELUG00000003614pabpc1a5881.421ENSNGAG00000012688-9878.061Nannospalax_galili
ENSELUG00000003614pabpc1a10093.868ENSNBRG00000003068-9993.944Neolamprologus_brichardi
ENSELUG00000003614pabpc1a10090.409ENSNBRG00000013737pabpc1b9990.566Neolamprologus_brichardi
ENSELUG00000003614pabpc1a5879.592ENSNLEG00000018128-9879.592Nomascus_leucogenys
ENSELUG00000003614pabpc1a6079.082ENSODEG00000018540-9879.082Octodon_degus
ENSELUG00000003614pabpc1a10093.553ENSONIG00000006871-9993.553Oreochromis_niloticus
ENSELUG00000003614pabpc1a10090.566ENSONIG00000002717pabpc1b9990.723Oreochromis_niloticus
ENSELUG00000003614pabpc1a6079.592ENSOCUG00000002565-9879.592Oryctolagus_cuniculus
ENSELUG00000003614pabpc1a10093.553ENSORLG00000002691pabpc1a9697.222Oryzias_latipes
ENSELUG00000003614pabpc1a10084.858ENSORLG00000003008-9984.858Oryzias_latipes
ENSELUG00000003614pabpc1a10093.711ENSORLG00020022398pabpc1a9993.711Oryzias_latipes_hni
ENSELUG00000003614pabpc1a10085.016ENSORLG00020022259-9985.016Oryzias_latipes_hni
ENSELUG00000003614pabpc1a10085.174ENSORLG00015010932-9985.174Oryzias_latipes_hsok
ENSELUG00000003614pabpc1a10093.553ENSORLG00015013633pabpc19993.553Oryzias_latipes_hsok
ENSELUG00000003614pabpc1a9181.777ENSOMEG00000013627pabpc1b9981.777Oryzias_melastigma
ENSELUG00000003614pabpc1a10093.868ENSOMEG00000020219pabpc1a9993.868Oryzias_melastigma
ENSELUG00000003614pabpc1a6079.592ENSOGAG00000029513-9879.592Otolemur_garnettii
ENSELUG00000003614pabpc1a6079.592ENSOGAG00000026047-9879.592Otolemur_garnettii
ENSELUG00000003614pabpc1a6079.592ENSOARG00000005943-9879.592Ovis_aries
ENSELUG00000003614pabpc1a5879.592ENSPPAG00000012920-9879.592Pan_paniscus
ENSELUG00000003614pabpc1a6079.592ENSPPRG00000011804-9879.592Panthera_pardus
ENSELUG00000003614pabpc1a6079.592ENSPPRG00000011809-9879.592Panthera_pardus
ENSELUG00000003614pabpc1a5879.592ENSPTRG00000028252-9879.592Pan_troglodytes
ENSELUG00000003614pabpc1a5879.592ENSPANG00000011549-9879.592Papio_anubis
ENSELUG00000003614pabpc1a10090.881ENSPKIG00000005676pabpc1b9990.881Paramormyrops_kingsleyae
ENSELUG00000003614pabpc1a7195.078ENSPMGG00000022487pabpc1a9295.078Periophthalmus_magnuspinnatus
ENSELUG00000003614pabpc1a7191.741ENSPMGG00000023134-9791.741Periophthalmus_magnuspinnatus
ENSELUG00000003614pabpc1a9872.258ENSPCIG00000016995-5372.258Phascolarctos_cinereus
ENSELUG00000003614pabpc1a10092.438ENSPFOG00000010815pabpc1a9992.438Poecilia_formosa
ENSELUG00000003614pabpc1a10089.780ENSPFOG00000005917pabpc1b9990.566Poecilia_formosa
ENSELUG00000003614pabpc1a10094.025ENSPLAG00000004114pabpc1a9994.025Poecilia_latipinna
ENSELUG00000003614pabpc1a10090.094ENSPLAG00000001388pabpc1b9990.881Poecilia_latipinna
ENSELUG00000003614pabpc1a10089.780ENSPMEG00000014399pabpc1b9990.566Poecilia_mexicana
ENSELUG00000003614pabpc1a10094.025ENSPMEG00000001334pabpc1a9994.025Poecilia_mexicana
ENSELUG00000003614pabpc1a10090.094ENSPREG00000010911pabpc1b9990.881Poecilia_reticulata
ENSELUG00000003614pabpc1a10090.810ENSPREG00000019595pabpc1a9993.379Poecilia_reticulata
ENSELUG00000003614pabpc1a6079.592ENSPPYG00000020468-9879.592Pongo_abelii
ENSELUG00000003614pabpc1a6079.592ENSPCAG00000005308-9879.592Procavia_capensis
ENSELUG00000003614pabpc1a6079.082ENSPCOG00000026349-9879.082Propithecus_coquereli
ENSELUG00000003614pabpc1a6080.000ENSPVAG00000016117-9880.000Pteropus_vampyrus
ENSELUG00000003614pabpc1a10090.409ENSPNYG00000012578pabpc1b9990.566Pundamilia_nyererei
ENSELUG00000003614pabpc1a10093.868ENSPNYG00000005192pabpc1a9993.868Pundamilia_nyererei
ENSELUG00000003614pabpc1a10090.723ENSPNAG00000024626pabpc1b9990.723Pygocentrus_nattereri
ENSELUG00000003614pabpc1a10090.866ENSPNAG00000028408pabpc1a9990.866Pygocentrus_nattereri
ENSELUG00000003614pabpc1a5879.592ENSRBIG00000027173-9879.592Rhinopithecus_bieti
ENSELUG00000003614pabpc1a9188.785ENSRBIG00000028738-9588.785Rhinopithecus_bieti
ENSELUG00000003614pabpc1a5879.592ENSRROG00000017404-9879.592Rhinopithecus_roxellana
ENSELUG00000003614pabpc1a9864.366ENSSHAG00000000511-10064.366Sarcophilus_harrisii
ENSELUG00000003614pabpc1a6979.191ENSSFOG00015019668-8879.191Scleropages_formosus
ENSELUG00000003614pabpc1a10091.181ENSSFOG00015002752-9991.339Scleropages_formosus
ENSELUG00000003614pabpc1a10090.236ENSSFOG00015006662pabpc1a9990.394Scleropages_formosus
ENSELUG00000003614pabpc1a10094.025ENSSMAG00000010803pabpc1a9994.025Scophthalmus_maximus
ENSELUG00000003614pabpc1a9990.536ENSSMAG00000006869pabpc1b9990.694Scophthalmus_maximus
ENSELUG00000003614pabpc1a10094.969ENSSDUG00000006675pabpc1a9994.969Seriola_dumerili
ENSELUG00000003614pabpc1a10089.465ENSSDUG00000011965pabpc1b9989.623Seriola_dumerili
ENSELUG00000003614pabpc1a10091.393ENSSLDG00000014156pabpc1b9991.549Seriola_lalandi_dorsalis
ENSELUG00000003614pabpc1a10094.969ENSSLDG00000011661pabpc1a9994.969Seriola_lalandi_dorsalis
ENSELUG00000003614pabpc1a10094.340ENSSPAG00000014453-9994.340Stegastes_partitus
ENSELUG00000003614pabpc1a10091.667ENSSPAG00000019265pabpc1b9991.981Stegastes_partitus
ENSELUG00000003614pabpc1a5879.592ENSSSCG00000036336-9879.592Sus_scrofa
ENSELUG00000003614pabpc1a5879.592ENSSSCG00000032167-9879.592Sus_scrofa
ENSELUG00000003614pabpc1a10092.151ENSTRUG00000011577-9992.622Takifugu_rubripes
ENSELUG00000003614pabpc1a10087.284ENSTRUG00000003767-9987.441Takifugu_rubripes
ENSELUG00000003614pabpc1a10087.344ENSTNIG00000009153pabpc1b9987.344Tetraodon_nigroviridis
ENSELUG00000003614pabpc1a10089.474ENSTNIG00000013307pabpc1a9989.938Tetraodon_nigroviridis
ENSELUG00000003614pabpc1a6079.592ENSTTRG00000013181-9879.592Tursiops_truncatus
ENSELUG00000003614pabpc1a6079.592ENSUAMG00000008089-9879.592Ursus_americanus
ENSELUG00000003614pabpc1a6079.592ENSUMAG00000003364-9879.592Ursus_maritimus
ENSELUG00000003614pabpc1a9753.635ENSUMAG00000023926-8967.857Ursus_maritimus
ENSELUG00000003614pabpc1a5978.500ENSVVUG00000015892-9778.500Vulpes_vulpes
ENSELUG00000003614pabpc1a9746.136ENSXETG00000015439-9746.065Xenopus_tropicalis
ENSELUG00000003614pabpc1a10090.047ENSXCOG00000017066pabpc1a9990.047Xiphophorus_couchianus
ENSELUG00000003614pabpc1a10086.435ENSXCOG00000019901pabpc1b9986.435Xiphophorus_couchianus
ENSELUG00000003614pabpc1a10089.937ENSXMAG00000003753pabpc1b9990.723Xiphophorus_maculatus
ENSELUG00000003614pabpc1a10094.182ENSXMAG00000002555pabpc1a9994.182Xiphophorus_maculatus

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