EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000003746 (Gene tree)
Gene ID: 105019769
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 28834 bases
Position: chrLG22:13055275-13084108
Accession: 105019769
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000027462	RRM_1	PF00076.22	5.8e-35	1	2
ENSELUP00000027462	RRM_1	PF00076.22	5.8e-35	2	2
ENSELUP00000002391	RRM_1	PF00076.22	1.2e-34	1	2
ENSELUP00000002391	RRM_1	PF00076.22	1.2e-34	2	2
ENSELUP00000002384	RRM_1	PF00076.22	1.2e-34	1	2
ENSELUP00000002384	RRM_1	PF00076.22	1.2e-34	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000015786	-	2064	-	ENSELUP00000002391	527 (aa)	-	-
ENSELUT00000015872	-	1254	XM_010886173	ENSELUP00000027462	417 (aa)	XP_010884475	-
ENSELUT00000015805	-	6268	XM_010886172	ENSELUP00000002384	535 (aa)	XP_010884474	UPI000576C752

Gene Model

Click here to download ENSELUG00000003746's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000003746's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000003746	pspc1	90	63.636	ENSELUG00000001083	nono	87	61.369
ENSELUG00000003746	pspc1	86	60.533	ENSELUG00000023145	sfpq	67	57.494

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000003746	pspc1	79	80.838	ENSG00000121390	PSPC1	99	71.859	Homo_sapiens
ENSELUG00000003746	pspc1	100	69.613	ENSAPOG00000015946	pspc1	100	69.061	Acanthochromis_polyacanthus
ENSELUG00000003746	pspc1	94	71.501	ENSAMEG00000017420	PSPC1	99	65.193	Ailuropoda_melanoleuca
ENSELUG00000003746	pspc1	100	61.878	ENSACIG00000018695	pspc1	100	60.589	Amphilophus_citrinellus
ENSELUG00000003746	pspc1	100	68.373	ENSAOCG00000005279	pspc1	100	68.073	Amphiprion_ocellaris
ENSELUG00000003746	pspc1	100	68.750	ENSAPEG00000015927	pspc1	100	67.391	Amphiprion_percula
ENSELUG00000003746	pspc1	99	62.919	ENSATEG00000004878	pspc1	100	57.904	Anabas_testudineus
ENSELUG00000003746	pspc1	76	70.883	ENSAPLG00000006246	PSPC1	100	71.394	Anas_platyrhynchos
ENSELUG00000003746	pspc1	74	72.436	ENSAPLG00000003643	SFPQ	67	67.806	Anas_platyrhynchos
ENSELUG00000003746	pspc1	74	65.517	ENSACAG00000013307	-	55	64.624	Anolis_carolinensis
ENSELUG00000003746	pspc1	94	72.335	ENSACAG00000002093	PSPC1	99	64.973	Anolis_carolinensis
ENSELUG00000003746	pspc1	94	72.564	ENSANAG00000000059	PSPC1	98	70.918	Aotus_nancymaae
ENSELUG00000003746	pspc1	98	63.507	ENSACLG00000027220	pspc1	100	60.623	Astatotilapia_calliptera
ENSELUG00000003746	pspc1	100	76.895	ENSAMXG00000036881	pspc1	100	77.449	Astyanax_mexicanus
ENSELUG00000003746	pspc1	94	72.589	ENSBTAG00000003934	PSPC1	99	65.751	Bos_taurus
ENSELUG00000003746	pspc1	94	72.564	ENSCJAG00000004554	PSPC1	99	65.867	Callithrix_jacchus
ENSELUG00000003746	pspc1	78	81.651	ENSCAFG00020002009	PSPC1	98	71.939	Canis_lupus_dingo
ENSELUG00000003746	pspc1	94	72.589	ENSCHIG00000016708	PSPC1	99	65.751	Capra_hircus
ENSELUG00000003746	pspc1	79	65.429	ENSTSYG00000032882	PSPC1	88	63.923	Carlito_syrichta
ENSELUG00000003746	pspc1	78	82.154	ENSCPOG00000000395	PSPC1	99	71.571	Cavia_porcellus
ENSELUG00000003746	pspc1	94	72.564	ENSCCAG00000033498	PSPC1	99	65.683	Cebus_capucinus
ENSELUG00000003746	pspc1	79	80.967	ENSCATG00000036434	PSPC1	95	78.613	Cercocebus_atys
ENSELUG00000003746	pspc1	63	83.525	ENSCLAG00000005241	PSPC1	89	70.803	Chinchilla_lanigera
ENSELUG00000003746	pspc1	82	80.294	ENSCHOG00000008913	PSPC1	99	63.352	Choloepus_hoffmanni
ENSELUG00000003746	pspc1	94	71.100	ENSCPBG00000020859	PSPC1	99	66.174	Chrysemys_picta_bellii
ENSELUG00000003746	pspc1	74	58.117	ENSCSAVG00000003533	-	53	61.151	Ciona_savignyi
ENSELUG00000003746	pspc1	63	83.525	ENSCANG00000018948	PSPC1	86	83.525	Colobus_angolensis_palliatus
ENSELUG00000003746	pspc1	94	72.308	ENSCGRG00001018368	Pspc1	99	65.683	Cricetulus_griseus_chok1gshd
ENSELUG00000003746	pspc1	94	72.308	ENSCGRG00000011724	Pspc1	99	65.683	Cricetulus_griseus_crigri
ENSELUG00000003746	pspc1	100	65.009	ENSCVAG00000007679	-	100	64.498	Cyprinodon_variegatus
ENSELUG00000003746	pspc1	100	72.119	ENSDARG00000006621	pspc1	100	74.939	Danio_rerio
ENSELUG00000003746	pspc1	78	82.154	ENSDNOG00000011078	PSPC1	91	70.408	Dasypus_novemcinctus
ENSELUG00000003746	pspc1	94	68.718	ENSDORG00000016050	Pspc1	99	63.100	Dipodomys_ordii
ENSELUG00000003746	pspc1	54	83.168	ENSETEG00000000502	-	72	83.168	Echinops_telfairi
ENSELUG00000003746	pspc1	87	56.855	ENSEBUG00000003964	-	73	62.836	Eptatretus_burgeri
ENSELUG00000003746	pspc1	80	42.061	ENSEBUG00000010133	pspc1	82	44.937	Eptatretus_burgeri
ENSELUG00000003746	pspc1	78	82.154	ENSEASG00005000119	PSPC1	98	72.449	Equus_asinus_asinus
ENSELUG00000003746	pspc1	78	82.154	ENSECAG00000017286	PSPC1	98	72.449	Equus_caballus
ENSELUG00000003746	pspc1	62	74.231	ENSEEUG00000011288	-	77	54.854	Erinaceus_europaeus
ENSELUG00000003746	pspc1	81	79.586	ENSFCAG00000027841	PSPC1	98	71.970	Felis_catus
ENSELUG00000003746	pspc1	94	71.939	ENSFALG00000008750	PSPC1	99	67.159	Ficedula_albicollis
ENSELUG00000003746	pspc1	78	81.651	ENSFDAG00000002617	PSPC1	91	71.069	Fukomys_damarensis
ENSELUG00000003746	pspc1	100	68.148	ENSGMOG00000015074	pspc1	100	68.257	Gadus_morhua
ENSELUG00000003746	pspc1	94	71.684	ENSGALG00000017142	PSPC1	99	66.667	Gallus_gallus
ENSELUG00000003746	pspc1	94	69.424	ENSGAFG00000006327	pspc1	81	69.077	Gambusia_affinis
ENSELUG00000003746	pspc1	100	63.636	ENSGACG00000014901	pspc1	98	73.143	Gasterosteus_aculeatus
ENSELUG00000003746	pspc1	94	71.100	ENSGAGG00000019164	PSPC1	99	66.174	Gopherus_agassizii
ENSELUG00000003746	pspc1	78	69.817	ENSGAGG00000017325	-	56	65.668	Gopherus_agassizii
ENSELUG00000003746	pspc1	79	80.838	ENSGGOG00000003414	PSPC1	99	71.859	Gorilla_gorilla
ENSELUG00000003746	pspc1	100	68.488	ENSHBUG00000001139	pspc1	100	69.373	Haplochromis_burtoni
ENSELUG00000003746	pspc1	78	82.154	ENSHGLG00000018811	PSPC1	89	71.069	Heterocephalus_glaber_female
ENSELUG00000003746	pspc1	70	83.562	ENSHGLG00100007962	PSPC1	89	84.138	Heterocephalus_glaber_male
ENSELUG00000003746	pspc1	91	65.885	ENSHCOG00000013251	pspc1	95	63.927	Hippocampus_comes
ENSELUG00000003746	pspc1	100	78.131	ENSIPUG00000013192	pspc1	100	78.131	Ictalurus_punctatus
ENSELUG00000003746	pspc1	94	71.939	ENSSTOG00000026833	PSPC1	98	72.081	Ictidomys_tridecemlineatus
ENSELUG00000003746	pspc1	88	72.050	ENSJJAG00000018334	Pspc1	99	65.314	Jaculus_jaculus
ENSELUG00000003746	pspc1	87	57.051	ENSKMAG00000013525	-	98	61.667	Kryptolebias_marmoratus
ENSELUG00000003746	pspc1	97	65.863	ENSLBEG00000004474	pspc1	96	64.378	Labrus_bergylta
ENSELUG00000003746	pspc1	92	69.048	ENSLACG00000010762	PSPC1	100	65.930	Latimeria_chalumnae
ENSELUG00000003746	pspc1	94	79.082	ENSLOCG00000010832	pspc1	99	71.927	Lepisosteus_oculatus
ENSELUG00000003746	pspc1	94	72.308	ENSLAFG00000010968	PSPC1	99	65.683	Loxodonta_africana
ENSELUG00000003746	pspc1	78	81.957	ENSMFAG00000032728	PSPC1	96	79.825	Macaca_fascicularis
ENSELUG00000003746	pspc1	78	81.957	ENSMMUG00000020262	PSPC1	92	80.000	Macaca_mulatta
ENSELUG00000003746	pspc1	78	81.957	ENSMNEG00000027401	PSPC1	99	67.850	Macaca_nemestrina
ENSELUG00000003746	pspc1	63	83.525	ENSMLEG00000039043	PSPC1	94	70.803	Mandrillus_leucophaeus
ENSELUG00000003746	pspc1	100	66.546	ENSMAMG00000004333	pspc1	100	64.801	Mastacembelus_armatus
ENSELUG00000003746	pspc1	98	63.507	ENSMZEG00005005726	pspc1	100	60.623	Maylandia_zebra
ENSELUG00000003746	pspc1	77	70.546	ENSMGAG00000015134	PSPC1	100	71.053	Meleagris_gallopavo
ENSELUG00000003746	pspc1	94	67.347	ENSMAUG00000021067	Pspc1	99	63.559	Mesocricetus_auratus
ENSELUG00000003746	pspc1	88	73.542	ENSMICG00000013970	PSPC1	99	72.070	Microcebus_murinus
ENSELUG00000003746	pspc1	94	72.194	ENSMOCG00000006060	Pspc1	99	65.498	Microtus_ochrogaster
ENSELUG00000003746	pspc1	70	81.481	ENSMMOG00000004352	pspc1	63	52.857	Mola_mola
ENSELUG00000003746	pspc1	81	80.178	ENSMODG00000008029	PSPC1	71	73.469	Monodelphis_domestica
ENSELUG00000003746	pspc1	100	68.275	ENSMALG00000008914	pspc1	100	68.156	Monopterus_albus
ENSELUG00000003746	pspc1	94	72.010	MGP_CAROLIEiJ_G0019341	Pspc1	99	68.499	Mus_caroli
ENSELUG00000003746	pspc1	94	72.010	ENSMUSG00000021938	Pspc1	99	68.499	Mus_musculus
ENSELUG00000003746	pspc1	94	72.010	MGP_PahariEiJ_G0030359	Pspc1	99	68.499	Mus_pahari
ENSELUG00000003746	pspc1	94	72.010	MGP_SPRETEiJ_G0020232	Pspc1	99	68.499	Mus_spretus
ENSELUG00000003746	pspc1	78	81.651	ENSMPUG00000013347	PSPC1	99	65.683	Mustela_putorius_furo
ENSELUG00000003746	pspc1	88	71.605	ENSMLUG00000017663	PSPC1	99	64.835	Myotis_lucifugus
ENSELUG00000003746	pspc1	100	67.339	ENSNGAG00000011271	Pspc1	99	65.498	Nannospalax_galili
ENSELUG00000003746	pspc1	99	64.578	ENSNBRG00000014059	pspc1	95	63.768	Neolamprologus_brichardi
ENSELUG00000003746	pspc1	78	81.651	ENSNLEG00000001294	PSPC1	89	71.488	Nomascus_leucogenys
ENSELUG00000003746	pspc1	67	76.777	ENSMEUG00000000476	PSPC1	76	76.777	Notamacropus_eugenii
ENSELUG00000003746	pspc1	78	76.758	ENSODEG00000019012	-	88	65.180	Octodon_degus
ENSELUG00000003746	pspc1	88	62.500	ENSODEG00000007817	-	99	56.827	Octodon_degus
ENSELUG00000003746	pspc1	100	70.295	ENSONIG00000012010	pspc1	99	70.111	Oreochromis_niloticus
ENSELUG00000003746	pspc1	62	84.556	ENSOANG00000009017	-	100	70.803	Ornithorhynchus_anatinus
ENSELUG00000003746	pspc1	80	65.165	ENSOANG00000011381	-	94	56.057	Ornithorhynchus_anatinus
ENSELUG00000003746	pspc1	78	81.651	ENSOCUG00000006153	PSPC1	99	65.746	Oryctolagus_cuniculus
ENSELUG00000003746	pspc1	100	65.934	ENSORLG00000004232	-	100	65.556	Oryzias_latipes
ENSELUG00000003746	pspc1	100	66.300	ENSORLG00020000578	PSPC1	100	65.741	Oryzias_latipes_hni
ENSELUG00000003746	pspc1	100	65.511	ENSORLG00015017480	pspc1	100	65.185	Oryzias_latipes_hsok
ENSELUG00000003746	pspc1	50	83.810	ENSOMEG00000003779	pspc1	95	83.575	Oryzias_melastigma
ENSELUG00000003746	pspc1	78	81.651	ENSOGAG00000012643	PSPC1	99	65.746	Otolemur_garnettii
ENSELUG00000003746	pspc1	76	82.555	ENSOARG00000014163	PSPC1	95	71.550	Ovis_aries
ENSELUG00000003746	pspc1	79	80.851	ENSPPAG00000009836	PSPC1	97	78.324	Pan_paniscus
ENSELUG00000003746	pspc1	78	82.154	ENSPPRG00000008833	PSPC1	99	65.385	Panthera_pardus
ENSELUG00000003746	pspc1	63	83.142	ENSPTIG00000016917	PSPC1	84	70.803	Panthera_tigris_altaica
ENSELUG00000003746	pspc1	79	80.838	ENSPTRG00000005677	PSPC1	99	71.859	Pan_troglodytes
ENSELUG00000003746	pspc1	78	81.651	ENSPANG00000001992	PSPC1	94	79.070	Papio_anubis
ENSELUG00000003746	pspc1	94	78.827	ENSPKIG00000003578	pspc1	100	70.513	Paramormyrops_kingsleyae
ENSELUG00000003746	pspc1	94	69.821	ENSPSIG00000005168	PSPC1	99	65.619	Pelodiscus_sinensis
ENSELUG00000003746	pspc1	86	65.833	ENSPMGG00000015135	pspc1	98	65.546	Periophthalmus_magnuspinnatus
ENSELUG00000003746	pspc1	94	71.939	ENSPEMG00000015214	Pspc1	99	65.498	Peromyscus_maniculatus_bairdii
ENSELUG00000003746	pspc1	68	45.862	ENSPMAG00000004618	pspc1	88	45.862	Petromyzon_marinus
ENSELUG00000003746	pspc1	81	80.178	ENSPCIG00000017680	PSPC1	92	70.204	Phascolarctos_cinereus
ENSELUG00000003746	pspc1	97	67.105	ENSPFOG00000003362	pspc1	98	67.105	Poecilia_formosa
ENSELUG00000003746	pspc1	82	59.610	ENSPLAG00000004407	-	50	62.291	Poecilia_latipinna
ENSELUG00000003746	pspc1	100	66.300	ENSPLAG00000011540	pspc1	100	66.300	Poecilia_latipinna
ENSELUG00000003746	pspc1	100	66.117	ENSPMEG00000008322	pspc1	100	66.117	Poecilia_mexicana
ENSELUG00000003746	pspc1	100	65.385	ENSPREG00000007786	pspc1	100	65.385	Poecilia_reticulata
ENSELUG00000003746	pspc1	78	81.651	ENSPPYG00000005186	PSPC1	98	68.277	Pongo_abelii
ENSELUG00000003746	pspc1	70	83.750	ENSPCAG00000008314	-	55	83.436	Procavia_capensis
ENSELUG00000003746	pspc1	80	80.723	ENSPCOG00000014364	PSPC1	99	62.709	Propithecus_coquereli
ENSELUG00000003746	pspc1	78	81.846	ENSPVAG00000005036	PSPC1	92	70.265	Pteropus_vampyrus
ENSELUG00000003746	pspc1	98	63.981	ENSPNYG00000008893	pspc1	100	60.989	Pundamilia_nyererei
ENSELUG00000003746	pspc1	100	76.636	ENSPNAG00000016511	pspc1	100	76.636	Pygocentrus_nattereri
ENSELUG00000003746	pspc1	100	66.422	ENSRNOG00000020782	Pspc1	99	68.365	Rattus_norvegicus
ENSELUG00000003746	pspc1	82	79.130	ENSRBIG00000036057	PSPC1	99	78.409	Rhinopithecus_bieti
ENSELUG00000003746	pspc1	82	79.412	ENSRROG00000036334	PSPC1	99	71.820	Rhinopithecus_roxellana
ENSELUG00000003746	pspc1	66	79.636	ENSSBOG00000028172	PSPC1	88	82.022	Saimiri_boliviensis_boliviensis
ENSELUG00000003746	pspc1	81	73.235	ENSSHAG00000004696	PSPC1	91	65.447	Sarcophilus_harrisii
ENSELUG00000003746	pspc1	77	88.545	ENSSFOG00015001395	pspc1	100	74.174	Scleropages_formosus
ENSELUG00000003746	pspc1	100	68.354	ENSSMAG00000001761	pspc1	100	67.935	Scophthalmus_maximus
ENSELUG00000003746	pspc1	100	68.028	ENSSDUG00000010651	pspc1	100	66.075	Seriola_dumerili
ENSELUG00000003746	pspc1	100	61.781	ENSSLDG00000004284	pspc1	100	60.478	Seriola_lalandi_dorsalis
ENSELUG00000003746	pspc1	78	74.462	ENSSARG00000000888	PSPC1	99	60.886	Sorex_araneus
ENSELUG00000003746	pspc1	94	64.796	ENSSPUG00000008550	PSPC1	99	57.117	Sphenodon_punctatus
ENSELUG00000003746	pspc1	86	51.183	ENSSPUG00000001136	-	52	59.544	Sphenodon_punctatus
ENSELUG00000003746	pspc1	100	68.545	ENSSPAG00000001921	pspc1	100	67.329	Stegastes_partitus
ENSELUG00000003746	pspc1	80	81.325	ENSSSCG00000009569	PSPC1	98	72.959	Sus_scrofa
ENSELUG00000003746	pspc1	87	72.117	ENSTGUG00000011295	PSPC1	99	72.574	Taeniopygia_guttata
ENSELUG00000003746	pspc1	100	61.624	ENSTRUG00000011335	pspc1	100	60.517	Takifugu_rubripes
ENSELUG00000003746	pspc1	100	62.197	ENSTNIG00000010358	pspc1	100	62.011	Tetraodon_nigroviridis
ENSELUG00000003746	pspc1	78	74.006	ENSTBEG00000002361	PSPC1	68	74.352	Tupaia_belangeri
ENSELUG00000003746	pspc1	94	72.405	ENSTTRG00000003343	PSPC1	99	65.996	Tursiops_truncatus
ENSELUG00000003746	pspc1	86	72.145	ENSUAMG00000012309	PSPC1	99	72.472	Ursus_americanus
ENSELUG00000003746	pspc1	82	79.706	ENSUMAG00000013993	PSPC1	95	79.240	Ursus_maritimus
ENSELUG00000003746	pspc1	76	71.703	ENSVPAG00000010029	PSPC1	100	70.803	Vicugna_pacos
ENSELUG00000003746	pspc1	81	79.586	ENSVVUG00000006414	PSPC1	99	71.939	Vulpes_vulpes
ENSELUG00000003746	pspc1	94	69.347	ENSXCOG00000017438	pspc1	92	69.250	Xiphophorus_couchianus
ENSELUG00000003746	pspc1	94	69.598	ENSXMAG00000007929	pspc1	92	69.500	Xiphophorus_maculatus