EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000004079 (Gene tree)
Gene ID: 105029800
Gene Symbol: -
Alias: -
Full Name: cleavage stimulation factor subunit 2
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 13088 bases
Position: chrLG04:1475293-1488380
Accession: 105029800
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000002728	RRM_1	PF00076.22	1.7e-24	1	1
ENSELUP00000002749	RRM_1	PF00076.22	1.7e-24	1	1
ENSELUP00000002715	RRM_1	PF00076.22	1.7e-24	1	1
ENSELUP00000002760	RRM_1	PF00076.22	1.8e-24	1	1
ENSELUP00000002736	RRM_1	PF00076.22	1.9e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000015172	-	6120	-	ENSELUP00000002760	507 (aa)	-	-
ENSELUT00000015201	-	5551	XM_010903332	ENSELUP00000002736	542 (aa)	XP_010901634	UPI000576F2CE
ENSELUT00000015185	-	6060	-	ENSELUP00000002749	487 (aa)	-	-
ENSELUT00000015229	-	1485	-	ENSELUP00000002715	494 (aa)	-	-
ENSELUT00000015216	-	5428	XM_010903349	ENSELUP00000002728	501 (aa)	XP_010901651	UPI0005771979

Gene Model

Click here to download ENSELUG00000004079's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000004079's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000004079	-	98	57.346	ENSG00000177613	CSTF2T	90	81.579	Homo_sapiens
ENSELUG00000004079	-	97	88.889	ENSAMEG00000015766	CSTF2T	99	50.617	Ailuropoda_melanoleuca
ENSELUG00000004079	-	95	87.037	ENSBTAG00000018406	CSTF2T	74	54.581	Bos_taurus
ENSELUG00000004079	-	62	54.518	ENSCJAG00000039083	-	51	69.744	Callithrix_jacchus
ENSELUG00000004079	-	61	57.313	ENSCJAG00000011554	-	54	72.637	Callithrix_jacchus
ENSELUG00000004079	-	99	63.200	ENSCAFG00000015567	CSTF2T	97	62.880	Canis_familiaris
ENSELUG00000004079	-	78	86.364	ENSCAFG00020026426	CSTF2T	53	86.735	Canis_lupus_dingo
ENSELUG00000004079	-	80	83.732	ENSCHIG00000016590	CSTF2T	99	48.858	Capra_hircus
ENSELUG00000004079	-	98	58.796	ENSTSYG00000007750	CSTF2T	58	89.848	Carlito_syrichta
ENSELUG00000004079	-	77	89.529	ENSCPOG00000004195	CSTF2T	57	88.660	Cavia_porcellus
ENSELUG00000004079	-	61	56.973	ENSCATG00000041868	-	51	73.469	Cercocebus_atys
ENSELUG00000004079	-	77	88.660	ENSCLAG00000017916	CSTF2T	81	82.456	Chinchilla_lanigera
ENSELUG00000004079	-	98	55.763	ENSCSAG00000018437	CSTF2T	84	90.306	Chlorocebus_sabaeus
ENSELUG00000004079	-	58	58.117	ENSCANG00000005843	-	50	73.469	Colobus_angolensis_palliatus
ENSELUG00000004079	-	77	88.660	ENSCGRG00001003222	Cstf2t	85	88.780	Cricetulus_griseus_chok1gshd
ENSELUG00000004079	-	77	88.660	ENSCGRG00000008682	Cstf2t	85	88.780	Cricetulus_griseus_crigri
ENSELUG00000004079	-	81	79.056	ENSCSEG00000002596	-	75	79.394	Cynoglossus_semilaevis
ENSELUG00000004079	-	98	56.844	ENSDNOG00000003283	CSTF2T	58	88.660	Dasypus_novemcinctus
ENSELUG00000004079	-	98	77.612	ENSDORG00000011245	Cstf2t	86	88.780	Dipodomys_ordii
ENSELUG00000004079	-	98	49.098	ENSEBUG00000014295	CSTF2T	90	73.770	Eptatretus_burgeri
ENSELUG00000004079	-	97	56.607	ENSEASG00005012929	CSTF2T	85	90.306	Equus_asinus_asinus
ENSELUG00000004079	-	97	56.607	ENSECAG00000004701	CSTF2T	85	90.306	Equus_caballus
ENSELUG00000004079	-	98	55.326	ENSFCAG00000046300	CSTF2T	87	81.778	Felis_catus
ENSELUG00000004079	-	73	89.529	ENSFDAG00000021170	CSTF2T	82	82.609	Fukomys_damarensis
ENSELUG00000004079	-	98	58.587	ENSGGOG00000036416	-	79	89.848	Gorilla_gorilla
ENSELUG00000004079	-	98	58.587	ENSGGOG00000042388	-	79	89.848	Gorilla_gorilla
ENSELUG00000004079	-	87	89.000	ENSSTOG00000026303	CSTF2T	79	87.019	Ictidomys_tridecemlineatus
ENSELUG00000004079	-	96	79.104	ENSJJAG00000019881	Cstf2t	84	81.250	Jaculus_jaculus
ENSELUG00000004079	-	97	61.722	ENSLAFG00000002058	CSTF2T	63	88.660	Loxodonta_africana
ENSELUG00000004079	-	58	58.497	ENSMFAG00000042009	-	53	73.469	Macaca_fascicularis
ENSELUG00000004079	-	62	56.509	ENSMMUG00000042906	-	53	72.959	Macaca_mulatta
ENSELUG00000004079	-	58	58.497	ENSMNEG00000031410	-	53	73.469	Macaca_nemestrina
ENSELUG00000004079	-	76	88.265	ENSMAUG00000006359	Cstf2t	83	90.306	Mesocricetus_auratus
ENSELUG00000004079	-	77	89.119	ENSMICG00000000867	-	78	89.848	Microcebus_murinus
ENSELUG00000004079	-	77	89.119	ENSMICG00000030551	-	77	89.848	Microcebus_murinus
ENSELUG00000004079	-	76	88.265	ENSMOCG00000020428	Cstf2t	85	87.619	Microtus_ochrogaster
ENSELUG00000004079	-	98	80.522	ENSMALG00000008842	-	100	79.020	Monopterus_albus
ENSELUG00000004079	-	77	88.265	MGP_CAROLIEiJ_G0022872	Cstf2t	83	90.306	Mus_caroli
ENSELUG00000004079	-	77	88.265	ENSMUSG00000053536	Cstf2t	83	89.394	Mus_musculus
ENSELUG00000004079	-	78	88.265	MGP_PahariEiJ_G0014365	Cstf2t	83	89.394	Mus_pahari
ENSELUG00000004079	-	98	77.612	MGP_SPRETEiJ_G0023790	Cstf2t	84	89.394	Mus_spretus
ENSELUG00000004079	-	98	58.054	ENSMPUG00000020141	CSTF2T	82	81.498	Mustela_putorius_furo
ENSELUG00000004079	-	97	55.607	ENSMLUG00000011187	-	74	56.998	Myotis_lucifugus
ENSELUG00000004079	-	75	87.363	ENSMLUG00000027140	-	85	73.950	Myotis_lucifugus
ENSELUG00000004079	-	77	89.119	ENSNGAG00000003304	Cstf2t	82	90.306	Nannospalax_galili
ENSELUG00000004079	-	78	79.902	ENSNLEG00000012025	CSTF2T	78	84.264	Nomascus_leucogenys
ENSELUG00000004079	-	73	88.660	ENSODEG00000012386	CSTF2T	76	87.560	Octodon_degus
ENSELUG00000004079	-	98	61.092	ENSOCUG00000004647	-	83	55.144	Oryctolagus_cuniculus
ENSELUG00000004079	-	98	58.738	ENSOGAG00000014565	CSTF2T	63	88.660	Otolemur_garnettii
ENSELUG00000004079	-	95	87.037	ENSOARG00000013688	-	74	54.492	Ovis_aries
ENSELUG00000004079	-	80	83.412	ENSOARG00000019124	-	86	90.306	Ovis_aries
ENSELUG00000004079	-	63	56.193	ENSPPAG00000032242	-	52	72.959	Pan_paniscus
ENSELUG00000004079	-	98	54.905	ENSPPRG00000018659	CSTF2T	87	81.416	Panthera_pardus
ENSELUG00000004079	-	78	88.265	ENSPTIG00000021145	CSTF2T	87	81.416	Panthera_tigris_altaica
ENSELUG00000004079	-	63	56.193	ENSPTRG00000043097	-	52	72.959	Pan_troglodytes
ENSELUG00000004079	-	58	58.497	ENSPANG00000029734	-	53	73.469	Papio_anubis
ENSELUG00000004079	-	97	91.803	ENSPFOG00000016756	CSTF2T	83	91.803	Poecilia_formosa
ENSELUG00000004079	-	76	88.660	ENSPPYG00000002441	CSTF2T	85	88.235	Pongo_abelii
ENSELUG00000004079	-	79	83.491	ENSPCAG00000000046	CSTF2T	84	90.306	Procavia_capensis
ENSELUG00000004079	-	74	88.265	ENSPCOG00000010982	CSTF2T	79	89.848	Propithecus_coquereli
ENSELUG00000004079	-	98	57.711	ENSPVAG00000006274	CSTF2T	59	88.660	Pteropus_vampyrus
ENSELUG00000004079	-	76	88.265	ENSRNOG00000050289	Cstf2t	83	89.394	Rattus_norvegicus
ENSELUG00000004079	-	76	88.265	ENSRBIG00000029324	CSTF2T	58	88.660	Rhinopithecus_bieti
ENSELUG00000004079	-	76	88.265	ENSRROG00000042507	CSTF2T	58	88.660	Rhinopithecus_roxellana
ENSELUG00000004079	-	78	88.265	ENSSBOG00000022638	CSTF2T	84	90.306	Saimiri_boliviensis_boliviensis
ENSELUG00000004079	-	97	82.186	ENSSDUG00000001049	-	95	81.579	Seriola_dumerili
ENSELUG00000004079	-	97	82.186	ENSSLDG00000010056	-	95	81.579	Seriola_lalandi_dorsalis
ENSELUG00000004079	-	83	89.394	ENSSARG00000002013	-	78	89.796	Sorex_araneus
ENSELUG00000004079	-	100	86.873	ENSSPAG00000009247	-	96	80.282	Stegastes_partitus
ENSELUG00000004079	-	78	88.265	ENSSSCG00000010430	CSTF2T	84	90.306	Sus_scrofa
ENSELUG00000004079	-	97	77.822	ENSTRUG00000004323	-	96	75.422	Takifugu_rubripes
ENSELUG00000004079	-	98	48.788	ENSTBEG00000014379	CSTF2T	75	51.967	Tupaia_belangeri
ENSELUG00000004079	-	80	83.732	ENSTTRG00000003341	CSTF2T	58	88.660	Tursiops_truncatus
ENSELUG00000004079	-	67	86.802	ENSVVUG00000002575	CSTF2T	82	85.366	Vulpes_vulpes