EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000004092 (Gene tree)
Gene ID: 105016499
Gene Symbol: rab20
Alias: fb01f02|wu:fb01f02|wu:fj82g08|zgc:64047
Full Name: ras-related protein Rab-20
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 7371 bases
Position: chrLG16:25637167-25644537
Accession: 105016499
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000027755	MMR_HSR1	PF01926.23	7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000015128	-	789	XM_010880395	ENSELUP00000027755	262 (aa)	XP_010878697	UPI000576D6C1

Gene Model

Click here to download ENSELUG00000004092's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000004092's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000004092	rab20	50	30.882	ENSELUG00000012166	RAB1A	64	30.882
ENSELUG00000004092	rab20	54	32.886	ENSELUG00000023972	rab35	73	32.886
ENSELUG00000004092	rab20	50	33.577	ENSELUG00000023247	si:dkey-16l2.16	64	33.577
ENSELUG00000004092	rab20	54	30.405	ENSELUG00000012801	rab13	74	30.405
ENSELUG00000004092	rab20	51	31.884	ENSELUG00000020012	rab15	60	33.333
ENSELUG00000004092	rab20	50	33.824	ENSELUG00000012060	rab25b	64	33.824

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000004092	rab20	98	78.988	ENSATEG00000011117	rab20	99	78.988	Anabas_testudineus
ENSELUG00000004092	rab20	98	61.719	ENSAPLG00000011744	RAB20	99	61.719	Anas_platyrhynchos
ENSELUG00000004092	rab20	97	58.824	ENSACAG00000014045	RAB20	99	58.824	Anolis_carolinensis
ENSELUG00000004092	rab20	98	69.531	ENSAMXG00000003504	rab20	99	69.531	Astyanax_mexicanus
ENSELUG00000004092	rab20	97	61.569	ENSCPBG00000005866	RAB20	99	61.569	Chrysemys_picta_bellii
ENSELUG00000004092	rab20	98	71.206	ENSCSEG00000011160	rab20	100	71.206	Cynoglossus_semilaevis
ENSELUG00000004092	rab20	100	71.374	ENSDARG00000005049	rab20	99	71.374	Danio_rerio
ENSELUG00000004092	rab20	98	62.109	ENSFALG00000004409	RAB20	99	62.109	Ficedula_albicollis
ENSELUG00000004092	rab20	98	80.385	ENSGACG00000003527	rab20	100	80.385	Gasterosteus_aculeatus
ENSELUG00000004092	rab20	100	77.186	ENSHCOG00000013468	rab20	99	77.186	Hippocampus_comes
ENSELUG00000004092	rab20	98	69.261	ENSIPUG00000000432	RAB20	97	70.155	Ictalurus_punctatus
ENSELUG00000004092	rab20	98	69.261	ENSIPUG00000018288	RAB20	97	70.155	Ictalurus_punctatus
ENSELUG00000004092	rab20	97	61.569	ENSLACG00000011001	RAB20	99	61.569	Latimeria_chalumnae
ENSELUG00000004092	rab20	100	79.468	ENSMAMG00000015214	rab20	99	79.468	Mastacembelus_armatus
ENSELUG00000004092	rab20	98	70.817	ENSMMOG00000020022	rab20	99	70.817	Mola_mola
ENSELUG00000004092	rab20	98	60.547	ENSMEUG00000009442	RAB20	99	60.547	Notamacropus_eugenii
ENSELUG00000004092	rab20	85	46.983	ENSPMAG00000004439	rab20	98	47.845	Petromyzon_marinus
ENSELUG00000004092	rab20	98	69.531	ENSPNAG00000008867	rab20	99	70.312	Pygocentrus_nattereri
ENSELUG00000004092	rab20	98	78.599	ENSSMAG00000018818	rab20	99	78.599	Scophthalmus_maximus
ENSELUG00000004092	rab20	100	79.468	ENSSDUG00000005148	rab20	99	79.468	Seriola_dumerili
ENSELUG00000004092	rab20	98	61.719	ENSTGUG00000008797	RAB20	99	61.719	Taeniopygia_guttata
ENSELUG00000004092	rab20	100	76.046	ENSTRUG00000022951	rab20	99	76.046	Takifugu_rubripes
ENSELUG00000004092	rab20	94	70.612	ENSTNIG00000013920	rab20	99	69.261	Tetraodon_nigroviridis