EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000004132 (Gene tree)
Gene ID: 105021717
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 8884 bases
Position: chrLG03:15659508-15668391
Accession: 105021717
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000027786	RRM_1	PF00076.22	8.1e-13	1	1
ENSELUP00000027794	RRM_1	PF00076.22	8.6e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000015062	-	5290	XM_013133282	ENSELUP00000027786	295 (aa)	XP_012988736	UPI000661A577
ENSELUT00000015071	-	915	XM_010889584	ENSELUP00000027794	304 (aa)	XP_010887886	-

Gene Model

Click here to download ENSELUG00000004132's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000004132's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000004132	-	73	52.609	ENSELUG00000001702	-	83	52.632
ENSELUG00000004132	-	93	40.789	ENSELUG00000011138	raly	85	47.287
ENSELUG00000004132	-	85	78.810	ENSELUG00000007714	-	93	79.004

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000004132	-	74	55.804	ENSG00000184672	RALYL	99	71.429	Homo_sapiens
ENSELUG00000004132	-	87	83.268	ENSAPOG00000006963	hnrnpc	85	82.090	Acanthochromis_polyacanthus
ENSELUG00000004132	-	99	77.097	ENSACIG00000016568	-	99	78.387	Amphilophus_citrinellus
ENSELUG00000004132	-	88	81.679	ENSACIG00000000270	-	95	78.824	Amphilophus_citrinellus
ENSELUG00000004132	-	87	82.879	ENSAOCG00000003896	-	85	81.716	Amphiprion_ocellaris
ENSELUG00000004132	-	99	75.962	ENSAOCG00000021616	-	96	77.389	Amphiprion_ocellaris
ENSELUG00000004132	-	99	69.805	ENSAPEG00000019962	-	85	79.779	Amphiprion_percula
ENSELUG00000004132	-	87	82.879	ENSAPEG00000001489	-	85	81.716	Amphiprion_percula
ENSELUG00000004132	-	91	79.412	ENSATEG00000018006	-	96	78.457	Anabas_testudineus
ENSELUG00000004132	-	88	80.843	ENSATEG00000011734	-	85	83.137	Anabas_testudineus
ENSELUG00000004132	-	74	54.741	ENSAPLG00000015574	RALYL	80	54.008	Anas_platyrhynchos
ENSELUG00000004132	-	90	47.183	ENSACAG00000028464	RALYL	93	48.214	Anolis_carolinensis
ENSELUG00000004132	-	74	56.250	ENSANAG00000023383	RALYL	76	57.919	Aotus_nancymaae
ENSELUG00000004132	-	87	78.295	ENSACLG00000000995	-	81	82.805	Astatotilapia_calliptera
ENSELUG00000004132	-	87	77.907	ENSACLG00000013636	-	87	78.067	Astatotilapia_calliptera
ENSELUG00000004132	-	91	78.676	ENSACLG00000005707	-	90	80.882	Astatotilapia_calliptera
ENSELUG00000004132	-	72	78.404	ENSAMXG00000042946	hnrnpc	97	77.202	Astyanax_mexicanus
ENSELUG00000004132	-	91	79.478	ENSAMXG00000034915	zgc:55733	91	77.985	Astyanax_mexicanus
ENSELUG00000004132	-	74	55.804	ENSCJAG00000000402	RALYL	76	57.466	Callithrix_jacchus
ENSELUG00000004132	-	94	48.611	ENSCPOG00000012314	RALYL	79	54.430	Cavia_porcellus
ENSELUG00000004132	-	94	49.466	ENSCCAG00000025003	RALYL	76	75.641	Cebus_capucinus
ENSELUG00000004132	-	74	55.804	ENSCATG00000042145	RALYL	76	55.702	Cercocebus_atys
ENSELUG00000004132	-	94	48.264	ENSCLAG00000005228	RALYL	79	54.430	Chinchilla_lanigera
ENSELUG00000004132	-	72	54.425	ENSCHOG00000013228	RALYL	75	52.381	Choloepus_hoffmanni
ENSELUG00000004132	-	74	55.804	ENSCANG00000039144	RALYL	76	55.702	Colobus_angolensis_palliatus
ENSELUG00000004132	-	90	48.252	ENSCGRG00001009241	Ralyl	79	54.008	Cricetulus_griseus_chok1gshd
ENSELUG00000004132	-	91	70.632	ENSCSEG00000021349	-	82	72.694	Cynoglossus_semilaevis
ENSELUG00000004132	-	75	73.874	ENSCSEG00000019769	-	73	75.926	Cynoglossus_semilaevis
ENSELUG00000004132	-	99	75.000	ENSCVAG00000016981	-	81	76.838	Cyprinodon_variegatus
ENSELUG00000004132	-	93	65.942	ENSCVAG00000002797	-	86	64.259	Cyprinodon_variegatus
ENSELUG00000004132	-	91	79.478	ENSDARG00000103845	zgc:55733	93	77.736	Danio_rerio
ENSELUG00000004132	-	84	80.723	ENSDARG00000053810	hnrnpc	82	78.519	Danio_rerio
ENSELUG00000004132	-	94	48.276	ENSDORG00000003721	Ralyl	79	54.008	Dipodomys_ordii
ENSELUG00000004132	-	57	58.046	ENSETEG00000014028	RALYL	82	61.111	Echinops_telfairi
ENSELUG00000004132	-	73	47.368	ENSEBUG00000012363	hnrnpc	67	48.035	Eptatretus_burgeri
ENSELUG00000004132	-	74	46.491	ENSEBUG00000006049	RALYL	76	46.875	Eptatretus_burgeri
ENSELUG00000004132	-	78	53.279	ENSEEUG00000007202	RALYL	82	54.357	Erinaceus_europaeus
ENSELUG00000004132	-	77	53.138	ENSFALG00000008647	RALYL	96	58.411	Ficedula_albicollis
ENSELUG00000004132	-	88	74.729	ENSFHEG00000007278	-	82	74.170	Fundulus_heteroclitus
ENSELUG00000004132	-	93	76.978	ENSFHEG00000003605	-	86	74.627	Fundulus_heteroclitus
ENSELUG00000004132	-	75	54.626	ENSGALG00000036938	RALYL	79	54.008	Gallus_gallus
ENSELUG00000004132	-	99	73.885	ENSGAFG00000020992	-	92	74.219	Gambusia_affinis
ENSELUG00000004132	-	93	76.259	ENSGAFG00000020486	-	81	81.106	Gambusia_affinis
ENSELUG00000004132	-	75	70.354	ENSGACG00000018932	-	87	73.733	Gasterosteus_aculeatus
ENSELUG00000004132	-	100	67.890	ENSGACG00000017772	-	99	79.767	Gasterosteus_aculeatus
ENSELUG00000004132	-	74	55.804	ENSGGOG00000000841	RALYL	76	55.702	Gorilla_gorilla
ENSELUG00000004132	-	99	76.923	ENSHBUG00000010527	-	96	79.167	Haplochromis_burtoni
ENSELUG00000004132	-	87	78.682	ENSHBUG00000018342	-	92	72.039	Haplochromis_burtoni
ENSELUG00000004132	-	94	47.917	ENSHGLG00000004866	RALYL	79	54.008	Heterocephalus_glaber_female
ENSELUG00000004132	-	94	47.917	ENSHGLG00100017480	RALYL	79	54.008	Heterocephalus_glaber_male
ENSELUG00000004132	-	89	74.729	ENSHCOG00000012333	hnrnpc	97	71.947	Hippocampus_comes
ENSELUG00000004132	-	91	78.358	ENSIPUG00000008666	zgc:55733	94	83.333	Ictalurus_punctatus
ENSELUG00000004132	-	89	77.947	ENSIPUG00000011271	hnrnpc	98	82.743	Ictalurus_punctatus
ENSELUG00000004132	-	90	48.252	ENSSTOG00000012583	RALYL	81	54.430	Ictidomys_tridecemlineatus
ENSELUG00000004132	-	92	78.022	ENSKMAG00000011170	-	82	80.392	Kryptolebias_marmoratus
ENSELUG00000004132	-	99	74.434	ENSKMAG00000018265	-	83	79.044	Kryptolebias_marmoratus
ENSELUG00000004132	-	94	73.171	ENSLBEG00000024418	-	84	75.486	Labrus_bergylta
ENSELUG00000004132	-	99	75.405	ENSLBEG00000006193	-	96	78.317	Labrus_bergylta
ENSELUG00000004132	-	91	79.104	ENSLBEG00000006979	-	84	83.197	Labrus_bergylta
ENSELUG00000004132	-	90	71.269	ENSLOCG00000002560	hnrnpc	91	75.185	Lepisosteus_oculatus
ENSELUG00000004132	-	74	55.804	ENSMNEG00000033288	RALYL	76	55.702	Macaca_nemestrina
ENSELUG00000004132	-	74	55.804	ENSMLEG00000038284	RALYL	76	55.702	Mandrillus_leucophaeus
ENSELUG00000004132	-	87	82.879	ENSMAMG00000012236	-	84	82.090	Mastacembelus_armatus
ENSELUG00000004132	-	99	75.161	ENSMAMG00000008033	-	90	81.154	Mastacembelus_armatus
ENSELUG00000004132	-	99	77.244	ENSMZEG00005024249	-	96	79.487	Maylandia_zebra
ENSELUG00000004132	-	87	78.295	ENSMZEG00005020460	-	87	77.395	Maylandia_zebra
ENSELUG00000004132	-	90	48.252	ENSMAUG00000015149	Ralyl	79	54.008	Mesocricetus_auratus
ENSELUG00000004132	-	77	53.879	ENSMICG00000005558	RALYL	79	75.641	Microcebus_murinus
ENSELUG00000004132	-	74	54.741	ENSMOCG00000017371	Ralyl	76	56.140	Microtus_ochrogaster
ENSELUG00000004132	-	93	75.510	ENSMMOG00000019520	-	100	77.211	Mola_mola
ENSELUG00000004132	-	90	78.358	ENSMMOG00000021465	-	92	80.669	Mola_mola
ENSELUG00000004132	-	88	71.264	ENSMALG00000007520	-	84	73.622	Monopterus_albus
ENSELUG00000004132	-	91	79.259	ENSMALG00000014623	-	84	79.259	Monopterus_albus
ENSELUG00000004132	-	90	47.902	ENSMUSG00000039717	Ralyl	99	70.238	Mus_musculus
ENSELUG00000004132	-	77	54.167	ENSMPUG00000010724	RALYL	79	53.361	Mustela_putorius_furo
ENSELUG00000004132	-	90	47.902	ENSNGAG00000013375	Ralyl	79	53.586	Nannospalax_galili
ENSELUG00000004132	-	99	77.244	ENSNBRG00000015676	-	96	78.526	Neolamprologus_brichardi
ENSELUG00000004132	-	88	78.707	ENSNBRG00000004912	-	94	79.476	Neolamprologus_brichardi
ENSELUG00000004132	-	74	55.804	ENSNLEG00000002702	RALYL	73	55.702	Nomascus_leucogenys
ENSELUG00000004132	-	62	51.546	ENSOPRG00000013650	-	98	46.860	Ochotona_princeps
ENSELUG00000004132	-	94	47.917	ENSODEG00000001012	RALYL	81	53.719	Octodon_degus
ENSELUG00000004132	-	99	77.244	ENSONIG00000018350	-	96	78.526	Oreochromis_niloticus
ENSELUG00000004132	-	98	77.076	ENSONIG00000007859	-	93	76.534	Oreochromis_niloticus
ENSELUG00000004132	-	87	72.201	ENSORLG00000009999	-	83	72.763	Oryzias_latipes
ENSELUG00000004132	-	99	73.125	ENSORLG00000003144	-	82	77.061	Oryzias_latipes
ENSELUG00000004132	-	87	71.815	ENSORLG00020018228	hnrnpc	83	72.374	Oryzias_latipes_hni
ENSELUG00000004132	-	99	73.602	ENSORLG00015009460	-	82	77.061	Oryzias_latipes_hsok
ENSELUG00000004132	-	87	72.201	ENSORLG00015019755	-	83	72.763	Oryzias_latipes_hsok
ENSELUG00000004132	-	87	72.587	ENSOMEG00000020488	-	85	71.004	Oryzias_melastigma
ENSELUG00000004132	-	99	76.699	ENSOMEG00000022665	-	96	77.814	Oryzias_melastigma
ENSELUG00000004132	-	74	55.804	ENSPPAG00000038705	RALYL	76	55.702	Pan_paniscus
ENSELUG00000004132	-	77	55.365	ENSPPRG00000018612	RALYL	76	57.014	Panthera_pardus
ENSELUG00000004132	-	77	55.144	ENSPTIG00000020331	RALYL	76	57.014	Panthera_tigris_altaica
ENSELUG00000004132	-	74	55.804	ENSPTRG00000020381	RALYL	76	55.702	Pan_troglodytes
ENSELUG00000004132	-	74	55.804	ENSPANG00000029305	RALYL	76	55.702	Papio_anubis
ENSELUG00000004132	-	100	81.994	ENSPKIG00000008592	-	97	82.315	Paramormyrops_kingsleyae
ENSELUG00000004132	-	89	78.967	ENSPKIG00000022837	-	92	79.798	Paramormyrops_kingsleyae
ENSELUG00000004132	-	94	47.475	ENSPSIG00000011135	RALYL	87	50.370	Pelodiscus_sinensis
ENSELUG00000004132	-	76	82.511	ENSPMGG00000013144	-	82	85.253	Periophthalmus_magnuspinnatus
ENSELUG00000004132	-	71	77.512	ENSPMGG00000017774	-	90	61.290	Periophthalmus_magnuspinnatus
ENSELUG00000004132	-	90	47.902	ENSPEMG00000016447	Ralyl	79	53.586	Peromyscus_maniculatus_bairdii
ENSELUG00000004132	-	74	52.564	ENSPMAG00000002407	RALYL	97	56.388	Petromyzon_marinus
ENSELUG00000004132	-	99	74.038	ENSPFOG00000002643	-	84	77.174	Poecilia_formosa
ENSELUG00000004132	-	93	74.638	ENSPFOG00000001583	-	83	76.863	Poecilia_formosa
ENSELUG00000004132	-	99	74.038	ENSPLAG00000000061	-	82	78.309	Poecilia_latipinna
ENSELUG00000004132	-	93	73.913	ENSPLAG00000015305	-	83	76.471	Poecilia_latipinna
ENSELUG00000004132	-	99	73.718	ENSPMEG00000016524	-	82	78.676	Poecilia_mexicana
ENSELUG00000004132	-	93	75.812	ENSPMEG00000004802	-	83	77.255	Poecilia_mexicana
ENSELUG00000004132	-	87	77.220	ENSPREG00000007928	-	83	76.953	Poecilia_reticulata
ENSELUG00000004132	-	91	73.571	ENSPREG00000001852	-	89	77.574	Poecilia_reticulata
ENSELUG00000004132	-	56	63.415	ENSPPYG00000018710	-	67	70.874	Pongo_abelii
ENSELUG00000004132	-	78	52.675	ENSPVAG00000010821	RALYL	80	53.306	Pteropus_vampyrus
ENSELUG00000004132	-	91	78.309	ENSPNYG00000003747	-	90	80.515	Pundamilia_nyererei
ENSELUG00000004132	-	88	79.848	ENSPNYG00000020293	-	86	80.859	Pundamilia_nyererei
ENSELUG00000004132	-	84	80.321	ENSPNAG00000015686	hnrnpc	89	80.074	Pygocentrus_nattereri
ENSELUG00000004132	-	91	74.729	ENSPNAG00000019200	zgc:55733	86	73.188	Pygocentrus_nattereri
ENSELUG00000004132	-	74	55.804	ENSRROG00000023925	RALYL	81	73.750	Rhinopithecus_roxellana
ENSELUG00000004132	-	88	79.851	ENSSFOG00015012924	-	81	95.000	Scleropages_formosus
ENSELUG00000004132	-	91	79.927	ENSSFOG00015012015	-	82	87.963	Scleropages_formosus
ENSELUG00000004132	-	87	78.599	ENSSMAG00000013592	-	84	77.574	Scophthalmus_maximus
ENSELUG00000004132	-	100	73.651	ENSSMAG00000011147	-	97	76.972	Scophthalmus_maximus
ENSELUG00000004132	-	99	81.433	ENSSDUG00000006730	-	96	81.433	Seriola_dumerili
ENSELUG00000004132	-	91	83.643	ENSSDUG00000001723	-	85	83.209	Seriola_dumerili
ENSELUG00000004132	-	91	84.015	ENSSLDG00000007454	-	86	83.582	Seriola_lalandi_dorsalis
ENSELUG00000004132	-	91	84.074	ENSSLDG00000007474	-	92	84.074	Seriola_lalandi_dorsalis
ENSELUG00000004132	-	68	67.890	ENSSARG00000002374	RALYL	80	44.783	Sorex_araneus
ENSELUG00000004132	-	91	83.271	ENSSPAG00000023204	-	85	82.463	Stegastes_partitus
ENSELUG00000004132	-	99	76.206	ENSSPAG00000013996	-	96	79.421	Stegastes_partitus
ENSELUG00000004132	-	77	53.556	ENSTGUG00000011689	RALYL	81	54.430	Taeniopygia_guttata
ENSELUG00000004132	-	90	74.818	ENSTRUG00000020158	-	83	78.824	Takifugu_rubripes
ENSELUG00000004132	-	87	74.031	ENSTNIG00000000334	-	97	74.621	Tetraodon_nigroviridis
ENSELUG00000004132	-	88	71.536	ENSTNIG00000007427	-	83	75.096	Tetraodon_nigroviridis
ENSELUG00000004132	-	75	47.619	ENSTBEG00000005551	RALYL	89	47.479	Tupaia_belangeri
ENSELUG00000004132	-	78	51.029	ENSTTRG00000015762	RALYL	80	52.083	Tursiops_truncatus
ENSELUG00000004132	-	77	49.160	ENSVPAG00000008501	RALYL	79	50.000	Vicugna_pacos
ENSELUG00000004132	-	91	73.529	ENSXCOG00000006552	-	82	72.549	Xiphophorus_couchianus
ENSELUG00000004132	-	54	85.366	ENSXCOG00000019434	-	72	83.626	Xiphophorus_couchianus
ENSELUG00000004132	-	93	76.978	ENSXMAG00000009333	-	83	78.125	Xiphophorus_maculatus
ENSELUG00000004132	-	91	73.571	ENSXMAG00000022849	-	86	77.574	Xiphophorus_maculatus