EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000004375 (Gene tree)
Gene ID: 105017374
Gene Symbol: mbd1b
Alias: mbd1|wu:fi45g12
Full Name: methyl-CpG binding domain protein 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 21430 bases
Position: chrLG17:28053687-28075116
Accession: 105017374
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000027954	MBD	PF01429.19	4.3e-11	1	1
ENSELUP00000003060	MBD	PF01429.19	4.3e-11	1	1
ENSELUP00000003090	MBD	PF01429.19	4.5e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000014657	-	3659	-	ENSELUP00000003060	860 (aa)	-	-
ENSELUT00000014629	-	3962	XM_010881932	ENSELUP00000027954	849 (aa)	XP_010880234	-
ENSELUT00000014606	-	4103	XM_010881929	ENSELUP00000003090	896 (aa)	XP_010880231	UPI000576B268

Gene Model

Click here to download ENSELUG00000004375's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000004375's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000004375	mbd1b	96	43.375	ENSAPOG00000012810	mbd1b	98	44.457	Acanthochromis_polyacanthus
ENSELUG00000004375	mbd1b	99	40.869	ENSACIG00000010590	mbd1b	99	41.105	Amphilophus_citrinellus
ENSELUG00000004375	mbd1b	97	43.715	ENSAOCG00000020272	mbd1b	96	44.851	Amphiprion_ocellaris
ENSELUG00000004375	mbd1b	97	43.826	ENSAPEG00000023230	mbd1b	96	44.966	Amphiprion_percula
ENSELUG00000004375	mbd1b	99	43.764	ENSATEG00000009608	mbd1b	99	44.207	Anabas_testudineus
ENSELUG00000004375	mbd1b	99	43.682	ENSACLG00000021383	mbd1b	99	44.967	Astatotilapia_calliptera
ENSELUG00000004375	mbd1b	51	31.169	ENSCAFG00000018928	MBD1	65	32.727	Canis_familiaris
ENSELUG00000004375	mbd1b	51	33.036	ENSCAFG00020024272	MBD1	67	32.727	Canis_lupus_dingo
ENSELUG00000004375	mbd1b	50	31.767	ENSCPOG00000001671	MBD1	65	31.850	Cavia_porcellus
ENSELUG00000004375	mbd1b	52	50.725	ENSCATG00000029959	MBD1	85	50.725	Cercocebus_atys
ENSELUG00000004375	mbd1b	91	41.597	ENSCSEG00000009082	mbd1b	95	42.619	Cynoglossus_semilaevis
ENSELUG00000004375	mbd1b	98	46.404	ENSCVAG00000001167	mbd1b	91	45.340	Cyprinodon_variegatus
ENSELUG00000004375	mbd1b	90	39.372	ENSDARG00000025699	mbd1b	81	38.941	Danio_rerio
ENSELUG00000004375	mbd1b	50	32.468	ENSEASG00005003857	MBD1	92	52.174	Equus_asinus_asinus
ENSELUG00000004375	mbd1b	92	44.963	ENSFHEG00000020120	mbd1b	93	45.700	Fundulus_heteroclitus
ENSELUG00000004375	mbd1b	85	45.503	ENSGAFG00000008975	mbd1b	84	58.025	Gambusia_affinis
ENSELUG00000004375	mbd1b	69	63.514	ENSGACG00000012106	-	99	63.514	Gasterosteus_aculeatus
ENSELUG00000004375	mbd1b	99	43.246	ENSHBUG00000014270	mbd1b	99	44.530	Haplochromis_burtoni
ENSELUG00000004375	mbd1b	76	55.128	ENSHCOG00000009952	mbd1b	79	55.128	Hippocampus_comes
ENSELUG00000004375	mbd1b	80	56.209	ENSIPUG00000015243	-	85	56.098	Ictalurus_punctatus
ENSELUG00000004375	mbd1b	86	44.600	ENSKMAG00000020760	mbd1b	81	57.692	Kryptolebias_marmoratus
ENSELUG00000004375	mbd1b	82	32.084	ENSLACG00000002414	-	81	38.037	Latimeria_chalumnae
ENSELUG00000004375	mbd1b	52	50.725	ENSMFAG00000026335	MBD1	84	50.725	Macaca_fascicularis
ENSELUG00000004375	mbd1b	52	50.725	ENSMMUG00000009050	MBD1	76	50.725	Macaca_mulatta
ENSELUG00000004375	mbd1b	52	50.725	ENSMNEG00000038822	MBD1	84	50.725	Macaca_nemestrina
ENSELUG00000004375	mbd1b	52	50.725	ENSMLEG00000043121	MBD1	77	50.725	Mandrillus_leucophaeus
ENSELUG00000004375	mbd1b	67	45.880	ENSMAMG00000023341	-	92	42.794	Mastacembelus_armatus
ENSELUG00000004375	mbd1b	99	43.791	ENSMZEG00005010421	mbd1b	99	45.077	Maylandia_zebra
ENSELUG00000004375	mbd1b	79	70.642	ENSMMOG00000011607	mbd1b	99	70.968	Mola_mola
ENSELUG00000004375	mbd1b	61	45.205	ENSMODG00000001286	-	85	32.768	Monodelphis_domestica
ENSELUG00000004375	mbd1b	99	46.112	ENSMALG00000007808	mbd1b	99	45.952	Monopterus_albus
ENSELUG00000004375	mbd1b	99	43.373	ENSONIG00000020289	mbd1b	98	46.126	Oreochromis_niloticus
ENSELUG00000004375	mbd1b	96	43.488	ENSORLG00000029390	mbd1b	98	44.005	Oryzias_latipes
ENSELUG00000004375	mbd1b	99	42.558	ENSORLG00020000575	mbd1b	97	44.457	Oryzias_latipes_hni
ENSELUG00000004375	mbd1b	99	42.497	ENSORLG00015014812	mbd1b	97	43.991	Oryzias_latipes_hsok
ENSELUG00000004375	mbd1b	99	43.497	ENSOMEG00000023660	mbd1b	89	47.030	Oryzias_melastigma
ENSELUG00000004375	mbd1b	52	50.725	ENSPANG00000010867	MBD1	78	50.725	Papio_anubis
ENSELUG00000004375	mbd1b	88	44.851	ENSPFOG00000007511	mbd1b	83	57.407	Poecilia_formosa
ENSELUG00000004375	mbd1b	85	45.503	ENSPLAG00000021258	mbd1b	83	56.173	Poecilia_latipinna
ENSELUG00000004375	mbd1b	71	60.870	ENSPMEG00000024145	mbd1b	92	45.658	Poecilia_mexicana
ENSELUG00000004375	mbd1b	85	46.144	ENSPREG00000021805	mbd1b	88	58.642	Poecilia_reticulata
ENSELUG00000004375	mbd1b	52	52.174	ENSPCOG00000012450	MBD1	75	52.174	Propithecus_coquereli
ENSELUG00000004375	mbd1b	93	41.435	ENSPNAG00000018075	mbd1b	96	40.736	Pygocentrus_nattereri
ENSELUG00000004375	mbd1b	85	54.777	ENSSFOG00015008591	-	93	54.777	Scleropages_formosus
ENSELUG00000004375	mbd1b	90	45.400	ENSSMAG00000014640	mbd1b	82	46.014	Scophthalmus_maximus
ENSELUG00000004375	mbd1b	90	46.041	ENSSDUG00000012996	mbd1b	86	46.601	Seriola_dumerili
ENSELUG00000004375	mbd1b	76	52.500	ENSSLDG00000012422	mbd1b	75	62.338	Seriola_lalandi_dorsalis
ENSELUG00000004375	mbd1b	83	61.538	ENSSPAG00000021447	mbd1b	91	60.625	Stegastes_partitus
ENSELUG00000004375	mbd1b	89	45.116	ENSTRUG00000013422	mbd1b	91	44.059	Takifugu_rubripes
ENSELUG00000004375	mbd1b	50	66.667	ENSTNIG00000007326	-	57	62.602	Tetraodon_nigroviridis
ENSELUG00000004375	mbd1b	51	34.434	ENSUMAG00000002947	MBD1	61	48.101	Ursus_maritimus
ENSELUG00000004375	mbd1b	90	44.162	ENSXMAG00000005628	mbd1b	84	56.790	Xiphophorus_maculatus