EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000004675 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 38374 bases
Position: chrLG13:4545751-4584124
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000003448	RRM_1	PF00076.22	1.3e-35	1	2
ENSELUP00000003448	RRM_1	PF00076.22	1.3e-35	2	2
ENSELUP00000028201	RRM_1	PF00076.22	6.8e-26	1	1
ENSELUP00000003462	RRM_1	PF00076.22	8.7e-26	1	1
ENSELUP00000028185	RRM_1	PF00076.22	7.4e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000013983	-	3256	-	ENSELUP00000028201	210 (aa)	-	-
ENSELUT00000014013	-	3439	-	ENSELUP00000028185	146 (aa)	-	-
ENSELUT00000014003	-	3146	-	ENSELUP00000003448	170 (aa)	-	-
ENSELUT00000013992	-	3212	-	ENSELUP00000003462	192 (aa)	-	-

Gene Model

Click here to download ENSELUG00000004675's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000004675's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000004675	-	54	31.429	ENSELUG00000008024	elavl1a	64	34.247
ENSELUG00000004675	-	79	36.486	ENSELUG00000008025	elavl4	60	38.235
ENSELUG00000004675	-	50	31.507	ENSELUG00000005389	-	63	35.616
ENSELUG00000004675	-	55	42.500	ENSELUG00000006377	tia1	57	43.750
ENSELUG00000004675	-	80	37.363	ENSELUG00000023080	hnrnpa3	51	42.105
ENSELUG00000004675	-	60	42.500	ENSELUG00000005615	-	56	43.750
ENSELUG00000004675	-	55	92.593	ENSELUG00000004652	-	65	94.382
ENSELUG00000004675	-	80	45.946	ENSELUG00000011747	msi2a	51	45.333
ENSELUG00000004675	-	53	34.615	ENSELUG00000005247	-	60	44.615
ENSELUG00000004675	-	55	80.247	ENSELUG00000009891	cirbpa	63	69.672
ENSELUG00000004675	-	78	34.940	ENSELUG00000010026	ELAVL2	66	34.940
ENSELUG00000004675	-	87	32.283	ENSELUG00000024182	SRSF6	67	31.579
ENSELUG00000004675	-	79	35.135	ENSELUG00000023043	elavl3	61	35.616
ENSELUG00000004675	-	77	38.462	ENSELUG00000020089	-	53	43.421
ENSELUG00000004675	-	60	33.333	ENSELUG00000003289	-	67	36.923
ENSELUG00000004675	-	55	45.833	ENSELUG00000014398	-	51	42.857
ENSELUG00000004675	-	65	33.684	ENSELUG00000013506	SRSF6	61	31.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000004675	-	84	57.764	ENSAPOG00000004458	cirbpa	59	50.000	Acanthochromis_polyacanthus
ENSELUG00000004675	-	100	53.125	ENSACIG00000016116	cirbpa	78	56.522	Amphilophus_citrinellus
ENSELUG00000004675	-	57	74.699	ENSAMXG00000015612	cirbpb	58	55.118	Astyanax_mexicanus
ENSELUG00000004675	-	57	71.084	ENSAMXG00000002894	cirbpa	53	71.084	Astyanax_mexicanus
ENSELUG00000004675	-	70	69.231	ENSCSEG00000014344	cirbpa	54	59.829	Cynoglossus_semilaevis
ENSELUG00000004675	-	75	66.438	ENSDARG00000103672	cirbpa	78	49.342	Danio_rerio
ENSELUG00000004675	-	97	56.150	ENSDARG00000013351	cirbpb	81	49.351	Danio_rerio
ENSELUG00000004675	-	83	57.862	ENSFHEG00000002580	cirbpa	50	73.494	Fundulus_heteroclitus
ENSELUG00000004675	-	55	71.605	ENSGMOG00000012137	cirbpa	82	41.722	Gadus_morhua
ENSELUG00000004675	-	97	54.930	ENSGMOG00000007179	cirbpb	80	46.715	Gadus_morhua
ENSELUG00000004675	-	55	74.074	ENSHCOG00000001170	cirbpa	69	74.699	Hippocampus_comes
ENSELUG00000004675	-	80	60.494	ENSIPUG00000000698	cirbpb	72	50.000	Ictalurus_punctatus
ENSELUG00000004675	-	76	58.219	ENSLBEG00000000292	cirbpa	50	74.074	Labrus_bergylta
ENSELUG00000004675	-	58	69.412	ENSLBEG00000027731	-	67	72.289	Labrus_bergylta
ENSELUG00000004675	-	79	58.940	ENSMALG00000020092	cirbpa	73	57.576	Monopterus_albus
ENSELUG00000004675	-	94	54.717	ENSPFOG00000015653	cirbpa	58	54.701	Poecilia_formosa
ENSELUG00000004675	-	85	60.000	ENSPNAG00000019997	cirbpb	71	58.741	Pygocentrus_nattereri
ENSELUG00000004675	-	55	74.074	ENSSPAG00000023037	cirbpa	51	74.699	Stegastes_partitus
ENSELUG00000004675	-	87	63.780	ENSTRUG00000010187	cirbpa	61	74.699	Takifugu_rubripes
ENSELUG00000004675	-	100	47.594	ENSXCOG00000008262	cirbpa	92	72.603	Xiphophorus_couchianus
ENSELUG00000004675	-	100	47.594	ENSXMAG00000019336	cirbpa	73	56.391	Xiphophorus_maculatus