EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000004909 (Gene tree)
Gene ID: 105016235
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 57412 bases
Position: chrLG16:11659834-11717245
Accession: 105016235
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000028337	R3H	PF01424.22	2.5e-12	1	1
ENSELUP00000003694	R3H	PF01424.22	3.2e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000013600	R3HDM1-201	3654	XM_013137870	ENSELUP00000003694	1136 (aa)	XP_012993324	-
ENSELUT00000013636	R3HDM1-202	3054	-	ENSELUP00000028337	1017 (aa)	-	-

Gene Model

Click here to download ENSELUG00000004909's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000004909's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000004909	R3HDM1	63	36.252	ENSELUG00000002532	-	50	46.348
ENSELUG00000004909	R3HDM1	74	64.072	ENSELUG00000015969	r3hdm2	94	59.756
ENSELUG00000004909	R3HDM1	99	53.364	ENSELUG00000014413	r3hdm1	96	54.625

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000004909	R3HDM1	99	56.157	ENSG00000048991	R3HDM1	95	85.294	Homo_sapiens
ENSELUG00000004909	R3HDM1	87	52.846	ENSAPOG00000020850	r3hdm1	94	52.046	Acanthochromis_polyacanthus
ENSELUG00000004909	R3HDM1	99	55.504	ENSAMEG00000014886	R3HDM1	94	55.597	Ailuropoda_melanoleuca
ENSELUG00000004909	R3HDM1	86	51.852	ENSAOCG00000005192	r3hdm1	96	51.196	Amphiprion_ocellaris
ENSELUG00000004909	R3HDM1	82	52.282	ENSAPEG00000016108	r3hdm1	94	52.024	Amphiprion_percula
ENSELUG00000004909	R3HDM1	81	52.738	ENSATEG00000000232	r3hdm1	94	52.138	Anabas_testudineus
ENSELUG00000004909	R3HDM1	99	56.917	ENSAPLG00000015231	R3HDM1	94	56.372	Anas_platyrhynchos
ENSELUG00000004909	R3HDM1	99	54.414	ENSACAG00000001676	R3HDM1	89	60.111	Anolis_carolinensis
ENSELUG00000004909	R3HDM1	99	55.410	ENSANAG00000035334	R3HDM1	83	77.670	Aotus_nancymaae
ENSELUG00000004909	R3HDM1	81	52.333	ENSACLG00000027282	r3hdm1	95	50.760	Astatotilapia_calliptera
ENSELUG00000004909	R3HDM1	99	67.631	ENSAMXG00000012861	R3HDM1	93	75.516	Astyanax_mexicanus
ENSELUG00000004909	R3HDM1	90	70.145	ENSAMXG00000003536	r3hdm1	92	69.186	Astyanax_mexicanus
ENSELUG00000004909	R3HDM1	60	49.565	ENSAMXG00000020587	arpp21	84	57.085	Astyanax_mexicanus
ENSELUG00000004909	R3HDM1	99	53.958	ENSBTAG00000013302	R3HDM1	92	56.281	Bos_taurus
ENSELUG00000004909	R3HDM1	99	55.379	ENSCJAG00000011718	R3HDM1	83	77.670	Callithrix_jacchus
ENSELUG00000004909	R3HDM1	99	55.370	ENSCAFG00000005075	R3HDM1	94	55.504	Canis_familiaris
ENSELUG00000004909	R3HDM1	99	55.278	ENSCAFG00020016119	R3HDM1	91	63.401	Canis_lupus_dingo
ENSELUG00000004909	R3HDM1	99	55.347	ENSCHIG00000020851	R3HDM1	94	55.586	Capra_hircus
ENSELUG00000004909	R3HDM1	99	53.364	ENSCPOG00000012784	R3HDM1	86	70.991	Cavia_porcellus
ENSELUG00000004909	R3HDM1	99	55.369	ENSCCAG00000027199	R3HDM1	83	77.419	Cebus_capucinus
ENSELUG00000004909	R3HDM1	97	67.562	ENSCATG00000023642	R3HDM1	83	77.023	Cercocebus_atys
ENSELUG00000004909	R3HDM1	99	53.089	ENSCLAG00000007962	R3HDM1	80	79.828	Chinchilla_lanigera
ENSELUG00000004909	R3HDM1	99	54.042	ENSCSAG00000016356	R3HDM1	86	61.095	Chlorocebus_sabaeus
ENSELUG00000004909	R3HDM1	83	70.536	ENSCHOG00000013638	R3HDM1	79	70.536	Choloepus_hoffmanni
ENSELUG00000004909	R3HDM1	94	58.977	ENSCPBG00000009645	R3HDM1	100	76.753	Chrysemys_picta_bellii
ENSELUG00000004909	R3HDM1	99	55.638	ENSCANG00000034748	R3HDM1	83	77.994	Colobus_angolensis_palliatus
ENSELUG00000004909	R3HDM1	99	52.851	ENSCGRG00001012357	R3hdm1	87	57.525	Cricetulus_griseus_chok1gshd
ENSELUG00000004909	R3HDM1	99	54.528	ENSCGRG00000012080	R3hdm1	83	73.913	Cricetulus_griseus_crigri
ENSELUG00000004909	R3HDM1	86	42.843	ENSCSEG00000008944	r3hdm1	97	46.673	Cynoglossus_semilaevis
ENSELUG00000004909	R3HDM1	85	52.699	ENSCVAG00000007582	r3hdm1	95	52.187	Cyprinodon_variegatus
ENSELUG00000004909	R3HDM1	56	47.091	ENSDARG00000061081	arpp21	93	45.946	Danio_rerio
ENSELUG00000004909	R3HDM1	99	54.537	ENSDNOG00000000771	R3HDM1	94	54.696	Dasypus_novemcinctus
ENSELUG00000004909	R3HDM1	99	50.514	ENSETEG00000013606	R3HDM1	90	66.591	Echinops_telfairi
ENSELUG00000004909	R3HDM1	63	40.762	ENSEBUG00000014746	arpp21	97	40.976	Eptatretus_burgeri
ENSELUG00000004909	R3HDM1	99	55.847	ENSEASG00005007392	R3HDM1	88	66.430	Equus_asinus_asinus
ENSELUG00000004909	R3HDM1	99	55.742	ENSECAG00000019114	R3HDM1	88	66.430	Equus_caballus
ENSELUG00000004909	R3HDM1	81	60.573	ENSEEUG00000012589	R3HDM1	67	64.000	Erinaceus_europaeus
ENSELUG00000004909	R3HDM1	99	55.524	ENSFCAG00000027113	R3HDM1	85	70.294	Felis_catus
ENSELUG00000004909	R3HDM1	76	60.205	ENSFALG00000013731	R3HDM1	70	59.817	Ficedula_albicollis
ENSELUG00000004909	R3HDM1	99	53.165	ENSFDAG00000016478	R3HDM1	80	80.258	Fukomys_damarensis
ENSELUG00000004909	R3HDM1	85	52.302	ENSFHEG00000018713	r3hdm1	95	51.362	Fundulus_heteroclitus
ENSELUG00000004909	R3HDM1	62	69.804	ENSGMOG00000006042	-	78	70.633	Gadus_morhua
ENSELUG00000004909	R3HDM1	85	76.226	ENSGALG00000012246	R3HDM1	97	76.426	Gallus_gallus
ENSELUG00000004909	R3HDM1	81	51.299	ENSGAFG00000006203	r3hdm1	94	50.103	Gambusia_affinis
ENSELUG00000004909	R3HDM1	92	48.099	ENSGACG00000014925	r3hdm1	96	52.067	Gasterosteus_aculeatus
ENSELUG00000004909	R3HDM1	90	68.142	ENSGAGG00000007840	R3HDM1	82	71.117	Gopherus_agassizii
ENSELUG00000004909	R3HDM1	99	55.689	ENSGGOG00000008156	R3HDM1	83	77.670	Gorilla_gorilla
ENSELUG00000004909	R3HDM1	99	52.675	ENSHGLG00000015718	R3HDM1	80	79.828	Heterocephalus_glaber_female
ENSELUG00000004909	R3HDM1	99	52.584	ENSHGLG00100003184	-	80	79.828	Heterocephalus_glaber_male
ENSELUG00000004909	R3HDM1	82	51.459	ENSHGLG00100015374	-	83	50.871	Heterocephalus_glaber_male
ENSELUG00000004909	R3HDM1	86	45.375	ENSHCOG00000013366	r3hdm1	89	58.824	Hippocampus_comes
ENSELUG00000004909	R3HDM1	89	66.967	ENSIPUG00000013629	r3hdm1	89	77.323	Ictalurus_punctatus
ENSELUG00000004909	R3HDM1	60	40.055	ENSIPUG00000020552	arpp21	88	44.109	Ictalurus_punctatus
ENSELUG00000004909	R3HDM1	82	78.962	ENSIPUG00000001676	R3HDM1	99	70.960	Ictalurus_punctatus
ENSELUG00000004909	R3HDM1	99	55.369	ENSSTOG00000007572	R3HDM1	80	79.828	Ictidomys_tridecemlineatus
ENSELUG00000004909	R3HDM1	99	55.874	ENSLACG00000005334	R3HDM1	89	65.829	Latimeria_chalumnae
ENSELUG00000004909	R3HDM1	99	61.553	ENSLOCG00000001641	r3hdm1	90	65.209	Lepisosteus_oculatus
ENSELUG00000004909	R3HDM1	99	53.993	ENSLAFG00000009065	R3HDM1	87	75.072	Loxodonta_africana
ENSELUG00000004909	R3HDM1	99	55.751	ENSMFAG00000030331	R3HDM1	83	77.670	Macaca_fascicularis
ENSELUG00000004909	R3HDM1	99	55.369	ENSMMUG00000009844	R3HDM1	83	77.670	Macaca_mulatta
ENSELUG00000004909	R3HDM1	99	55.659	ENSMNEG00000027793	R3HDM1	83	77.670	Macaca_nemestrina
ENSELUG00000004909	R3HDM1	99	55.751	ENSMLEG00000043189	R3HDM1	83	77.670	Mandrillus_leucophaeus
ENSELUG00000004909	R3HDM1	86	52.053	ENSMAMG00000004532	r3hdm1	96	51.393	Mastacembelus_armatus
ENSELUG00000004909	R3HDM1	87	51.698	ENSMZEG00005003157	r3hdm1	96	51.282	Maylandia_zebra
ENSELUG00000004909	R3HDM1	99	56.742	ENSMGAG00000012461	R3HDM1	94	56.379	Meleagris_gallopavo
ENSELUG00000004909	R3HDM1	93	57.958	ENSMAUG00000010315	R3hdm1	83	73.913	Mesocricetus_auratus
ENSELUG00000004909	R3HDM1	99	54.469	ENSMICG00000005900	-	83	77.346	Microcebus_murinus
ENSELUG00000004909	R3HDM1	90	44.386	ENSMICG00000042655	-	87	77.023	Microcebus_murinus
ENSELUG00000004909	R3HDM1	92	59.033	ENSMODG00000000923	R3HDM1	95	58.845	Monodelphis_domestica
ENSELUG00000004909	R3HDM1	98	48.289	ENSMALG00000009000	r3hdm1	93	48.134	Monopterus_albus
ENSELUG00000004909	R3HDM1	99	52.846	MGP_CAROLIEiJ_G0014543	R3hdm1	77	80.000	Mus_caroli
ENSELUG00000004909	R3HDM1	99	52.936	ENSMUSG00000056211	R3hdm1	77	80.000	Mus_musculus
ENSELUG00000004909	R3HDM1	99	52.484	MGP_PahariEiJ_G0027779	R3hdm1	77	80.000	Mus_pahari
ENSELUG00000004909	R3HDM1	99	52.936	MGP_SPRETEiJ_G0015350	R3hdm1	77	80.000	Mus_spretus
ENSELUG00000004909	R3HDM1	99	55.192	ENSMPUG00000002412	R3HDM1	94	55.288	Mustela_putorius_furo
ENSELUG00000004909	R3HDM1	99	55.051	ENSMLUG00000013824	R3HDM1	94	54.898	Myotis_lucifugus
ENSELUG00000004909	R3HDM1	99	55.844	ENSNLEG00000008622	R3HDM1	83	78.387	Nomascus_leucogenys
ENSELUG00000004909	R3HDM1	92	49.300	ENSMEUG00000011784	R3HDM1	92	59.922	Notamacropus_eugenii
ENSELUG00000004909	R3HDM1	99	52.359	ENSODEG00000008607	R3HDM1	80	79.399	Octodon_degus
ENSELUG00000004909	R3HDM1	98	47.705	ENSONIG00000012017	r3hdm1	98	46.709	Oreochromis_niloticus
ENSELUG00000004909	R3HDM1	99	55.131	ENSOANG00000007987	R3HDM1	94	56.250	Ornithorhynchus_anatinus
ENSELUG00000004909	R3HDM1	92	56.865	ENSOCUG00000017366	R3HDM1	97	56.917	Oryctolagus_cuniculus
ENSELUG00000004909	R3HDM1	86	50.975	ENSORLG00000004297	r3hdm1	96	50.488	Oryzias_latipes
ENSELUG00000004909	R3HDM1	86	50.751	ENSORLG00015017355	r3hdm1	95	50.794	Oryzias_latipes_hsok
ENSELUG00000004909	R3HDM1	99	55.295	ENSOGAG00000003136	R3HDM1	94	55.514	Otolemur_garnettii
ENSELUG00000004909	R3HDM1	99	55.587	ENSOARG00000010788	R3HDM1	94	55.823	Ovis_aries
ENSELUG00000004909	R3HDM1	99	56.244	ENSPPAG00000027858	R3HDM1	92	75.610	Pan_paniscus
ENSELUG00000004909	R3HDM1	99	55.524	ENSPPRG00000002626	R3HDM1	92	74.913	Panthera_pardus
ENSELUG00000004909	R3HDM1	99	55.524	ENSPTIG00000016581	R3HDM1	92	74.913	Panthera_tigris_altaica
ENSELUG00000004909	R3HDM1	99	56.244	ENSPTRG00000012494	R3HDM1	92	75.610	Pan_troglodytes
ENSELUG00000004909	R3HDM1	99	55.751	ENSPANG00000026448	R3HDM1	83	77.670	Papio_anubis
ENSELUG00000004909	R3HDM1	85	81.091	ENSPKIG00000004328	r3hdm1	87	81.319	Paramormyrops_kingsleyae
ENSELUG00000004909	R3HDM1	99	55.410	ENSPSIG00000012915	R3HDM1	94	56.150	Pelodiscus_sinensis
ENSELUG00000004909	R3HDM1	99	53.117	ENSPEMG00000015187	R3hdm1	83	73.518	Peromyscus_maniculatus_bairdii
ENSELUG00000004909	R3HDM1	91	40.307	ENSPMAG00000003369	-	98	40.922	Petromyzon_marinus
ENSELUG00000004909	R3HDM1	99	56.374	ENSPCIG00000002491	R3HDM1	88	66.509	Phascolarctos_cinereus
ENSELUG00000004909	R3HDM1	85	53.027	ENSPFOG00000015036	r3hdm1	95	52.348	Poecilia_formosa
ENSELUG00000004909	R3HDM1	81	52.418	ENSPLAG00000018042	r3hdm1	94	50.772	Poecilia_latipinna
ENSELUG00000004909	R3HDM1	81	52.762	ENSPMEG00000023947	r3hdm1	94	51.187	Poecilia_mexicana
ENSELUG00000004909	R3HDM1	85	53.418	ENSPREG00000007902	r3hdm1	86	63.658	Poecilia_reticulata
ENSELUG00000004909	R3HDM1	99	54.851	ENSPPYG00000012815	R3HDM1	94	55.319	Pongo_abelii
ENSELUG00000004909	R3HDM1	93	68.000	ENSPCAG00000006208	R3HDM1	81	68.821	Procavia_capensis
ENSELUG00000004909	R3HDM1	99	55.211	ENSPCOG00000012698	R3HDM1	93	76.727	Propithecus_coquereli
ENSELUG00000004909	R3HDM1	99	47.632	ENSPVAG00000006098	R3HDM1	89	53.203	Pteropus_vampyrus
ENSELUG00000004909	R3HDM1	61	48.607	ENSPNAG00000004162	arpp21	91	48.870	Pygocentrus_nattereri
ENSELUG00000004909	R3HDM1	85	85.393	ENSPNAG00000005436	R3HDM1	96	85.660	Pygocentrus_nattereri
ENSELUG00000004909	R3HDM1	90	70.930	ENSPNAG00000013952	r3hdm1	92	71.176	Pygocentrus_nattereri
ENSELUG00000004909	R3HDM1	99	52.213	ENSRNOG00000004099	R3hdm1	86	59.704	Rattus_norvegicus
ENSELUG00000004909	R3HDM1	99	55.266	ENSRBIG00000033317	R3HDM1	88	82.353	Rhinopithecus_bieti
ENSELUG00000004909	R3HDM1	99	55.514	ENSRROG00000034534	R3HDM1	83	77.994	Rhinopithecus_roxellana
ENSELUG00000004909	R3HDM1	99	55.089	ENSSBOG00000020389	R3HDM1	83	77.670	Saimiri_boliviensis_boliviensis
ENSELUG00000004909	R3HDM1	99	56.682	ENSSHAG00000016999	R3HDM1	94	56.673	Sarcophilus_harrisii
ENSELUG00000004909	R3HDM1	90	76.716	ENSSFOG00015014134	r3hdm1	86	76.877	Scleropages_formosus
ENSELUG00000004909	R3HDM1	99	59.249	ENSSFOG00015019851	-	88	70.270	Scleropages_formosus
ENSELUG00000004909	R3HDM1	99	47.756	ENSSMAG00000001669	r3hdm1	95	47.207	Scophthalmus_maximus
ENSELUG00000004909	R3HDM1	86	50.310	ENSSDUG00000010749	r3hdm1	97	49.360	Seriola_dumerili
ENSELUG00000004909	R3HDM1	98	48.206	ENSSLDG00000004499	r3hdm1	93	47.922	Seriola_lalandi_dorsalis
ENSELUG00000004909	R3HDM1	99	56.348	ENSSPUG00000004167	R3HDM1	94	56.343	Sphenodon_punctatus
ENSELUG00000004909	R3HDM1	86	51.863	ENSSPAG00000004648	r3hdm1	97	49.810	Stegastes_partitus
ENSELUG00000004909	R3HDM1	89	75.636	ENSSSCG00000015692	R3HDM1	83	73.856	Sus_scrofa
ENSELUG00000004909	R3HDM1	99	55.376	ENSTGUG00000011750	R3HDM1	93	55.258	Taeniopygia_guttata
ENSELUG00000004909	R3HDM1	82	49.000	ENSTRUG00000011654	r3hdm1	94	48.594	Takifugu_rubripes
ENSELUG00000004909	R3HDM1	86	47.961	ENSTNIG00000010362	r3hdm1	96	47.284	Tetraodon_nigroviridis
ENSELUG00000004909	R3HDM1	95	53.523	ENSTTRG00000003935	R3HDM1	84	61.776	Tursiops_truncatus
ENSELUG00000004909	R3HDM1	73	57.477	ENSUAMG00000024806	R3HDM1	85	77.670	Ursus_americanus
ENSELUG00000004909	R3HDM1	95	55.707	ENSUMAG00000005552	R3HDM1	92	74.913	Ursus_maritimus
ENSELUG00000004909	R3HDM1	94	55.467	ENSVPAG00000007333	R3HDM1	88	55.030	Vicugna_pacos
ENSELUG00000004909	R3HDM1	99	53.989	ENSVVUG00000006457	R3HDM1	83	77.670	Vulpes_vulpes
ENSELUG00000004909	R3HDM1	90	56.298	ENSXETG00000019330	r3hdm1	99	55.981	Xenopus_tropicalis
ENSELUG00000004909	R3HDM1	70	50.850	ENSXCOG00000017448	r3hdm1	94	49.034	Xiphophorus_couchianus
ENSELUG00000004909	R3HDM1	85	52.157	ENSXMAG00000007885	r3hdm1	95	51.808	Xiphophorus_maculatus