EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000005389 (Gene tree)
Gene ID: 105025368
Gene Symbol: -
Alias: -
Full Name: polyadenylate-binding protein 1-like 2
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 723 bases
Position: chrLG08:7081282-7082004
Accession: 105025368
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000004220	RRM_1	PF00076.22	7.6e-43	1	2
ENSELUP00000004220	RRM_1	PF00076.22	7.6e-43	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000012700	-	723	XM_020048740	ENSELUP00000004220	240 (aa)	XP_019904299	UPI0009733FAD

Gene Model

Click here to download ENSELUG00000005389's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03013	RNA transport	KEGG
els03015	mRNA surveillance pathway	KEGG
els03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000005389's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000005389	-	97	59.402	ENSELUG00000003614	pabpc1a	60	59.402
ENSELUG00000005389	-	63	35.616	ENSELUG00000004675	-	50	31.507
ENSELUG00000005389	-	97	54.310	ENSELUG00000001811	pabpc1l	67	54.310
ENSELUG00000005389	-	92	47.000	ENSELUG00000005247	-	78	47.000
ENSELUG00000005389	-	65	32.500	ENSELUG00000005615	-	87	32.500
ENSELUG00000005389	-	65	33.125	ENSELUG00000006377	tia1	66	33.125
ENSELUG00000005389	-	72	32.680	ENSELUG00000010026	ELAVL2	60	32.680
ENSELUG00000005389	-	65	31.250	ENSELUG00000020994	tial1	67	31.250
ENSELUG00000005389	-	70	35.294	ENSELUG00000008025	elavl4	80	31.902
ENSELUG00000005389	-	72	32.051	ENSELUG00000008024	elavl1a	90	32.051
ENSELUG00000005389	-	100	58.333	ENSELUG00000015062	-	60	58.333
ENSELUG00000005389	-	93	60.811	ENSELUG00000003195	pabpc4	57	60.811
ENSELUG00000005389	-	72	32.530	ENSELUG00000023043	elavl3	67	32.530
ENSELUG00000005389	-	72	32.484	ENSELUG00000003289	-	91	32.484

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000005389	-	78	55.615	ENSG00000186288	PABPC1L2A	93	55.615	Homo_sapiens
ENSELUG00000005389	-	78	55.615	ENSG00000184388	PABPC1L2B	93	55.615	Homo_sapiens
ENSELUG00000005389	-	97	58.621	ENSAPOG00000015105	pabpc1a	59	58.621	Acanthochromis_polyacanthus
ENSELUG00000005389	-	97	59.483	ENSAPOG00000017776	pabpc1b	61	59.483	Acanthochromis_polyacanthus
ENSELUG00000005389	-	78	55.615	ENSAMEG00000019441	-	93	55.615	Ailuropoda_melanoleuca
ENSELUG00000005389	-	97	58.621	ENSACIG00000004685	pabpc1a	59	58.621	Amphilophus_citrinellus
ENSELUG00000005389	-	97	59.052	ENSACIG00000018366	pabpc1b	60	59.052	Amphilophus_citrinellus
ENSELUG00000005389	-	97	59.052	ENSAOCG00000019839	pabpc1b	59	59.052	Amphiprion_ocellaris
ENSELUG00000005389	-	97	58.621	ENSAOCG00000011656	pabpc1a	59	58.621	Amphiprion_ocellaris
ENSELUG00000005389	-	97	58.621	ENSAPEG00000006963	pabpc1a	59	58.621	Amphiprion_percula
ENSELUG00000005389	-	97	59.052	ENSAPEG00000010435	pabpc1b	59	59.052	Amphiprion_percula
ENSELUG00000005389	-	97	58.621	ENSATEG00000024852	pabpc1a	59	58.621	Anabas_testudineus
ENSELUG00000005389	-	97	59.052	ENSATEG00000012917	pabpc1b	59	59.052	Anabas_testudineus
ENSELUG00000005389	-	78	55.615	ENSANAG00000019431	-	93	55.615	Aotus_nancymaae
ENSELUG00000005389	-	78	55.615	ENSANAG00000019429	-	93	55.615	Aotus_nancymaae
ENSELUG00000005389	-	97	58.621	ENSACLG00000009399	pabpc1a	68	58.937	Astatotilapia_calliptera
ENSELUG00000005389	-	97	58.621	ENSACLG00000014335	pabpc1b	59	58.621	Astatotilapia_calliptera
ENSELUG00000005389	-	97	59.914	ENSAMXG00000008599	pabpc1b	59	59.914	Astyanax_mexicanus
ENSELUG00000005389	-	82	54.822	ENSBTAG00000050902	-	93	54.822	Bos_taurus
ENSELUG00000005389	-	82	54.592	ENSBTAG00000052491	-	90	54.592	Bos_taurus
ENSELUG00000005389	-	78	55.615	ENSCJAG00000041326	-	93	55.615	Callithrix_jacchus
ENSELUG00000005389	-	82	54.822	ENSCAFG00020002052	-	94	54.822	Canis_lupus_dingo
ENSELUG00000005389	-	78	55.615	ENSCHIG00000006283	-	93	55.615	Capra_hircus
ENSELUG00000005389	-	78	55.615	ENSCHIG00000011138	-	93	55.615	Capra_hircus
ENSELUG00000005389	-	78	55.615	ENSTSYG00000001775	-	93	55.615	Carlito_syrichta
ENSELUG00000005389	-	78	55.615	ENSCPOG00000009525	-	93	55.615	Cavia_porcellus
ENSELUG00000005389	-	78	55.615	ENSCCAG00000031524	-	93	55.615	Cebus_capucinus
ENSELUG00000005389	-	78	55.615	ENSCATG00000043125	-	93	55.615	Cercocebus_atys
ENSELUG00000005389	-	78	55.615	ENSCATG00000042826	-	93	55.615	Cercocebus_atys
ENSELUG00000005389	-	78	55.080	ENSCLAG00000017412	-	93	55.080	Chinchilla_lanigera
ENSELUG00000005389	-	78	55.080	ENSCLAG00000017409	-	93	55.080	Chinchilla_lanigera
ENSELUG00000005389	-	78	55.615	ENSCSAG00000000102	-	93	55.615	Chlorocebus_sabaeus
ENSELUG00000005389	-	75	55.801	ENSCGRG00001023387	-	92	53.723	Cricetulus_griseus_chok1gshd
ENSELUG00000005389	-	97	58.621	ENSCSEG00000013324	pabpc1a	59	58.621	Cynoglossus_semilaevis
ENSELUG00000005389	-	97	58.621	ENSCSEG00000015241	-	59	58.621	Cynoglossus_semilaevis
ENSELUG00000005389	-	97	58.621	ENSCVAG00000021872	pabpc1a	59	58.621	Cyprinodon_variegatus
ENSELUG00000005389	-	97	59.052	ENSCVAG00000005489	pabpc1b	59	59.052	Cyprinodon_variegatus
ENSELUG00000005389	-	97	59.483	ENSDARG00000021140	pabpc1b	99	61.268	Danio_rerio
ENSELUG00000005389	-	97	58.190	ENSDARG00000017219	pabpc1a	59	58.190	Danio_rerio
ENSELUG00000005389	-	78	55.319	ENSDNOG00000030926	-	96	54.688	Dasypus_novemcinctus
ENSELUG00000005389	-	78	55.615	ENSDORG00000011362	-	93	55.615	Dipodomys_ordii
ENSELUG00000005389	-	82	54.545	ENSEASG00005010399	-	94	54.545	Equus_asinus_asinus
ENSELUG00000005389	-	82	54.545	ENSECAG00000002620	-	94	54.545	Equus_caballus
ENSELUG00000005389	-	78	52.941	ENSEEUG00000008203	-	93	52.941	Erinaceus_europaeus
ENSELUG00000005389	-	78	55.615	ENSFCAG00000039701	-	93	55.615	Felis_catus
ENSELUG00000005389	-	78	55.615	ENSFDAG00000005484	-	93	55.615	Fukomys_damarensis
ENSELUG00000005389	-	97	58.621	ENSFHEG00000018979	pabpc1a	59	58.621	Fundulus_heteroclitus
ENSELUG00000005389	-	97	59.052	ENSFHEG00000008186	pabpc1b	59	59.052	Fundulus_heteroclitus
ENSELUG00000005389	-	97	59.052	ENSGMOG00000013448	pabpc1a	58	59.052	Gadus_morhua
ENSELUG00000005389	-	97	59.052	ENSGMOG00000002448	-	59	59.052	Gadus_morhua
ENSELUG00000005389	-	97	58.621	ENSGAFG00000019750	pabpc1a	63	58.621	Gambusia_affinis
ENSELUG00000005389	-	97	59.052	ENSGAFG00000010193	pabpc1b	62	59.052	Gambusia_affinis
ENSELUG00000005389	-	97	58.621	ENSGACG00000003572	pabpc1a	59	58.621	Gasterosteus_aculeatus
ENSELUG00000005389	-	97	59.052	ENSGACG00000003771	pabpc1b	66	59.052	Gasterosteus_aculeatus
ENSELUG00000005389	-	78	55.615	ENSGGOG00000043933	-	93	55.615	Gorilla_gorilla
ENSELUG00000005389	-	78	55.615	ENSGGOG00000038606	-	93	55.615	Gorilla_gorilla
ENSELUG00000005389	-	97	58.621	ENSHBUG00000020487	pabpc1a	68	58.937	Haplochromis_burtoni
ENSELUG00000005389	-	97	58.621	ENSHBUG00000002075	pabpc1b	62	58.621	Haplochromis_burtoni
ENSELUG00000005389	-	78	55.319	ENSHGLG00000019668	-	94	55.319	Heterocephalus_glaber_female
ENSELUG00000005389	-	78	55.319	ENSHGLG00000019762	-	94	55.319	Heterocephalus_glaber_female
ENSELUG00000005389	-	78	55.319	ENSHGLG00100020854	-	94	55.319	Heterocephalus_glaber_male
ENSELUG00000005389	-	97	58.621	ENSHCOG00000013502	pabpc1a	59	58.621	Hippocampus_comes
ENSELUG00000005389	-	93	53.153	ENSHCOG00000003175	pabpc1b	69	53.153	Hippocampus_comes
ENSELUG00000005389	-	97	57.759	ENSIPUG00000008848	pabpc1a	61	57.759	Ictalurus_punctatus
ENSELUG00000005389	-	95	48.198	ENSIPUG00000021244	-	52	48.198	Ictalurus_punctatus
ENSELUG00000005389	-	97	59.483	ENSIPUG00000010791	-	63	59.483	Ictalurus_punctatus
ENSELUG00000005389	-	94	43.111	ENSIPUG00000018724	-	52	43.111	Ictalurus_punctatus
ENSELUG00000005389	-	78	55.615	ENSSTOG00000022096	-	93	55.615	Ictidomys_tridecemlineatus
ENSELUG00000005389	-	78	55.615	ENSSTOG00000026028	-	93	55.615	Ictidomys_tridecemlineatus
ENSELUG00000005389	-	78	57.219	ENSJJAG00000007037	-	93	57.219	Jaculus_jaculus
ENSELUG00000005389	-	97	59.052	ENSKMAG00000008049	pabpc1b	64	59.052	Kryptolebias_marmoratus
ENSELUG00000005389	-	97	58.621	ENSKMAG00000000605	pabpc1a	59	58.621	Kryptolebias_marmoratus
ENSELUG00000005389	-	97	59.052	ENSLBEG00000026845	pabpc1b	59	59.052	Labrus_bergylta
ENSELUG00000005389	-	97	58.621	ENSLBEG00000024002	-	59	58.621	Labrus_bergylta
ENSELUG00000005389	-	78	55.615	ENSLAFG00000023096	-	93	55.615	Loxodonta_africana
ENSELUG00000005389	-	78	55.319	ENSMFAG00000028878	-	93	55.319	Macaca_fascicularis
ENSELUG00000005389	-	78	55.615	ENSMMUG00000037681	-	93	55.615	Macaca_mulatta
ENSELUG00000005389	-	78	55.615	ENSMMUG00000039929	-	93	55.615	Macaca_mulatta
ENSELUG00000005389	-	78	55.615	ENSMMUG00000009740	-	93	55.615	Macaca_mulatta
ENSELUG00000005389	-	78	55.615	ENSMNEG00000037732	-	93	55.615	Macaca_nemestrina
ENSELUG00000005389	-	78	55.615	ENSMLEG00000027495	-	93	55.615	Mandrillus_leucophaeus
ENSELUG00000005389	-	97	58.621	ENSMAMG00000004502	-	68	58.937	Mastacembelus_armatus
ENSELUG00000005389	-	97	59.052	ENSMAMG00000014610	pabpc1b	61	59.052	Mastacembelus_armatus
ENSELUG00000005389	-	97	58.621	ENSMZEG00005025416	pabpc1a	68	58.937	Maylandia_zebra
ENSELUG00000005389	-	97	58.621	ENSMZEG00005026745	pabpc1b	59	58.621	Maylandia_zebra
ENSELUG00000005389	-	78	55.615	ENSMICG00000047642	-	93	55.615	Microcebus_murinus
ENSELUG00000005389	-	97	58.621	ENSMMOG00000018044	pabpc1a	68	58.937	Mola_mola
ENSELUG00000005389	-	98	58.974	ENSMMOG00000018009	pabpc1b	63	58.974	Mola_mola
ENSELUG00000005389	-	93	54.955	ENSMODG00000013156	-	57	54.955	Monodelphis_domestica
ENSELUG00000005389	-	95	51.982	ENSMODG00000015024	-	58	51.982	Monodelphis_domestica
ENSELUG00000005389	-	97	59.052	ENSMALG00000006066	pabpc1b	64	59.052	Monopterus_albus
ENSELUG00000005389	-	97	58.621	ENSMALG00000013020	-	64	58.621	Monopterus_albus
ENSELUG00000005389	-	75	58.333	ENSNGAG00000012688	-	93	56.684	Nannospalax_galili
ENSELUG00000005389	-	97	58.696	ENSNBRG00000013737	pabpc1b	63	58.696	Neolamprologus_brichardi
ENSELUG00000005389	-	97	58.621	ENSNBRG00000003068	-	68	58.937	Neolamprologus_brichardi
ENSELUG00000005389	-	78	55.615	ENSNLEG00000018128	-	93	55.615	Nomascus_leucogenys
ENSELUG00000005389	-	78	56.684	ENSODEG00000018540	-	93	56.684	Octodon_degus
ENSELUG00000005389	-	97	58.621	ENSONIG00000006871	-	59	58.621	Oreochromis_niloticus
ENSELUG00000005389	-	97	58.621	ENSONIG00000002717	pabpc1b	59	58.621	Oreochromis_niloticus
ENSELUG00000005389	-	78	55.615	ENSOCUG00000002565	-	93	55.615	Oryctolagus_cuniculus
ENSELUG00000005389	-	97	58.621	ENSORLG00000002691	pabpc1a	68	58.937	Oryzias_latipes
ENSELUG00000005389	-	97	57.759	ENSORLG00000003008	-	60	57.759	Oryzias_latipes
ENSELUG00000005389	-	97	58.621	ENSORLG00020022398	pabpc1a	59	58.621	Oryzias_latipes_hni
ENSELUG00000005389	-	97	57.759	ENSORLG00020022259	-	60	57.759	Oryzias_latipes_hni
ENSELUG00000005389	-	97	57.759	ENSORLG00015010932	-	60	57.759	Oryzias_latipes_hsok
ENSELUG00000005389	-	97	58.621	ENSORLG00015013633	pabpc1	59	58.621	Oryzias_latipes_hsok
ENSELUG00000005389	-	97	58.621	ENSOMEG00000020219	pabpc1a	59	58.621	Oryzias_melastigma
ENSELUG00000005389	-	93	57.488	ENSOMEG00000013627	pabpc1b	67	57.488	Oryzias_melastigma
ENSELUG00000005389	-	78	55.615	ENSOGAG00000029513	-	93	55.615	Otolemur_garnettii
ENSELUG00000005389	-	78	55.615	ENSOGAG00000026047	-	93	55.615	Otolemur_garnettii
ENSELUG00000005389	-	78	55.615	ENSOARG00000005943	-	93	55.615	Ovis_aries
ENSELUG00000005389	-	78	55.615	ENSPPAG00000012920	-	93	55.615	Pan_paniscus
ENSELUG00000005389	-	78	55.615	ENSPPRG00000011809	-	93	55.615	Panthera_pardus
ENSELUG00000005389	-	78	55.615	ENSPPRG00000011804	-	93	55.615	Panthera_pardus
ENSELUG00000005389	-	78	55.615	ENSPTRG00000028252	-	93	55.615	Pan_troglodytes
ENSELUG00000005389	-	78	55.615	ENSPANG00000011549	-	93	55.615	Papio_anubis
ENSELUG00000005389	-	97	59.914	ENSPKIG00000005676	pabpc1b	59	59.914	Paramormyrops_kingsleyae
ENSELUG00000005389	-	97	59.375	ENSPMGG00000022487	pabpc1a	77	59.375	Periophthalmus_magnuspinnatus
ENSELUG00000005389	-	97	58.222	ENSPMGG00000023134	-	81	58.222	Periophthalmus_magnuspinnatus
ENSELUG00000005389	-	97	58.621	ENSPFOG00000010815	pabpc1a	58	58.621	Poecilia_formosa
ENSELUG00000005389	-	97	57.759	ENSPFOG00000005917	pabpc1b	59	57.759	Poecilia_formosa
ENSELUG00000005389	-	97	59.052	ENSPLAG00000001388	pabpc1b	59	59.052	Poecilia_latipinna
ENSELUG00000005389	-	97	58.621	ENSPLAG00000004114	pabpc1a	59	58.621	Poecilia_latipinna
ENSELUG00000005389	-	97	59.052	ENSPMEG00000014399	pabpc1b	62	56.897	Poecilia_mexicana
ENSELUG00000005389	-	97	58.621	ENSPMEG00000001334	pabpc1a	59	58.621	Poecilia_mexicana
ENSELUG00000005389	-	97	59.052	ENSPREG00000010911	pabpc1b	62	59.052	Poecilia_reticulata
ENSELUG00000005389	-	97	58.621	ENSPREG00000019595	pabpc1a	92	61.538	Poecilia_reticulata
ENSELUG00000005389	-	78	55.615	ENSPPYG00000020468	-	93	55.615	Pongo_abelii
ENSELUG00000005389	-	78	56.150	ENSPCAG00000005308	-	93	56.150	Procavia_capensis
ENSELUG00000005389	-	78	55.615	ENSPCOG00000026349	-	93	55.615	Propithecus_coquereli
ENSELUG00000005389	-	78	55.851	ENSPVAG00000016117	-	94	55.851	Pteropus_vampyrus
ENSELUG00000005389	-	97	58.621	ENSPNYG00000012578	pabpc1b	62	58.621	Pundamilia_nyererei
ENSELUG00000005389	-	97	58.621	ENSPNYG00000005192	pabpc1a	61	58.937	Pundamilia_nyererei
ENSELUG00000005389	-	97	58.621	ENSPNAG00000028408	pabpc1a	66	58.621	Pygocentrus_nattereri
ENSELUG00000005389	-	97	59.483	ENSPNAG00000024626	pabpc1b	59	59.483	Pygocentrus_nattereri
ENSELUG00000005389	-	78	55.615	ENSRBIG00000027173	-	93	55.615	Rhinopithecus_bieti
ENSELUG00000005389	-	93	56.757	ENSRBIG00000028738	-	68	56.757	Rhinopithecus_bieti
ENSELUG00000005389	-	78	55.615	ENSRROG00000017404	-	93	55.615	Rhinopithecus_roxellana
ENSELUG00000005389	-	96	49.130	ENSSHAG00000000511	-	60	49.130	Sarcophilus_harrisii
ENSELUG00000005389	-	73	60.000	ENSSFOG00015019668	-	67	60.000	Scleropages_formosus
ENSELUG00000005389	-	97	59.052	ENSSFOG00015002752	-	59	59.052	Scleropages_formosus
ENSELUG00000005389	-	97	59.052	ENSSFOG00015006662	pabpc1a	59	59.052	Scleropages_formosus
ENSELUG00000005389	-	97	58.621	ENSSMAG00000010803	pabpc1a	60	58.621	Scophthalmus_maximus
ENSELUG00000005389	-	97	59.914	ENSSMAG00000006869	pabpc1b	59	59.914	Scophthalmus_maximus
ENSELUG00000005389	-	97	59.483	ENSSDUG00000011965	pabpc1b	60	59.483	Seriola_dumerili
ENSELUG00000005389	-	97	58.621	ENSSDUG00000006675	pabpc1a	59	58.621	Seriola_dumerili
ENSELUG00000005389	-	97	59.483	ENSSLDG00000014156	pabpc1b	60	59.483	Seriola_lalandi_dorsalis
ENSELUG00000005389	-	97	58.621	ENSSLDG00000011661	pabpc1a	59	58.621	Seriola_lalandi_dorsalis
ENSELUG00000005389	-	97	58.621	ENSSPAG00000014453	-	59	58.621	Stegastes_partitus
ENSELUG00000005389	-	97	59.483	ENSSPAG00000019265	pabpc1b	65	59.483	Stegastes_partitus
ENSELUG00000005389	-	78	55.615	ENSSSCG00000032167	-	93	55.615	Sus_scrofa
ENSELUG00000005389	-	78	55.615	ENSSSCG00000036336	-	93	55.615	Sus_scrofa
ENSELUG00000005389	-	97	58.190	ENSTRUG00000003767	-	61	58.190	Takifugu_rubripes
ENSELUG00000005389	-	97	58.621	ENSTRUG00000011577	-	59	58.621	Takifugu_rubripes
ENSELUG00000005389	-	97	55.882	ENSTNIG00000013307	pabpc1a	59	55.882	Tetraodon_nigroviridis
ENSELUG00000005389	-	97	58.190	ENSTNIG00000009153	pabpc1b	59	58.190	Tetraodon_nigroviridis
ENSELUG00000005389	-	78	55.615	ENSTTRG00000013181	-	93	55.615	Tursiops_truncatus
ENSELUG00000005389	-	78	55.615	ENSUAMG00000008089	-	93	55.615	Ursus_americanus
ENSELUG00000005389	-	97	49.550	ENSUMAG00000023926	-	87	49.550	Ursus_maritimus
ENSELUG00000005389	-	78	55.615	ENSUMAG00000003364	-	93	55.615	Ursus_maritimus
ENSELUG00000005389	-	82	55.102	ENSVVUG00000015892	-	93	55.102	Vulpes_vulpes
ENSELUG00000005389	-	97	58.621	ENSXCOG00000017066	pabpc1a	63	58.621	Xiphophorus_couchianus
ENSELUG00000005389	-	97	59.052	ENSXCOG00000019901	pabpc1b	62	59.052	Xiphophorus_couchianus
ENSELUG00000005389	-	97	58.621	ENSXMAG00000002555	pabpc1a	62	58.621	Xiphophorus_maculatus
ENSELUG00000005389	-	97	59.052	ENSXMAG00000003753	pabpc1b	89	59.910	Xiphophorus_maculatus