EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000005671 (Gene tree)
Gene ID: 105008545
Gene Symbol: -
Alias: -
Full Name: uncharacterized LOC105008545
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 33905 bases
Position: chrLG07:39852791-39886695
Accession: 105008545
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000004517	MMR_HSR1	PF01926.23	1.1e-05	1	1
ENSELUP00000028890	MMR_HSR1	PF01926.23	1.1e-05	1	1
ENSELUP00000028897	MMR_HSR1	PF01926.23	1.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000012233	-	1944	-	ENSELUP00000028902	647 (aa)	-	-
ENSELUT00000012223	-	6226	XM_020048645	ENSELUP00000028897	1280 (aa)	XP_019904204	UPI000577E0B3
ENSELUT00000012208	-	6226	-	ENSELUP00000004517	1280 (aa)	-	UPI000577E0B3
ENSELUT00000012243	-	6226	XM_020048647	ENSELUP00000028890	1280 (aa)	XP_019904206	UPI000577E0B3

Gene Model

Click here to download ENSELUG00000005671's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000005671's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000005671	-	96	43.006	ENSELUG00000007062	-	95	43.167

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000005671	-	79	43.026	ENSACAG00000028691	-	96	43.026	Anolis_carolinensis
ENSELUG00000005671	-	96	41.714	ENSACLG00000022932	-	99	41.714	Astatotilapia_calliptera
ENSELUG00000005671	-	99	60.109	ENSAMXG00000033978	-	99	60.109	Astyanax_mexicanus
ENSELUG00000005671	-	99	60.249	ENSAMXG00000031410	-	99	60.249	Astyanax_mexicanus
ENSELUG00000005671	-	72	35.953	ENSCPBG00000009862	-	81	36.825	Chrysemys_picta_bellii
ENSELUG00000005671	-	87	44.632	ENSGAGG00000006690	-	99	44.632	Gopherus_agassizii
ENSELUG00000005671	-	99	41.149	ENSKMAG00000016912	-	98	41.149	Kryptolebias_marmoratus
ENSELUG00000005671	-	98	42.687	ENSKMAG00000011534	-	99	42.846	Kryptolebias_marmoratus
ENSELUG00000005671	-	99	60.000	ENSPNAG00000004915	-	99	60.000	Pygocentrus_nattereri
ENSELUG00000005671	-	99	41.693	ENSSMAG00000004655	-	99	41.693	Scophthalmus_maximus
ENSELUG00000005671	-	98	41.401	ENSSDUG00000017025	-	98	41.022	Seriola_dumerili
ENSELUG00000005671	-	91	42.267	ENSSLDG00000002567	-	99	42.267	Seriola_lalandi_dorsalis
ENSELUG00000005671	-	50	38.462	ENSSPUG00000001864	-	73	38.308	Sphenodon_punctatus
ENSELUG00000005671	-	72	43.255	ENSSPUG00000001872	-	89	43.255	Sphenodon_punctatus
ENSELUG00000005671	-	98	42.035	ENSXMAG00000024425	-	99	42.035	Xiphophorus_maculatus