EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000005849 (Gene tree)
Gene ID: 105017332
Gene Symbol: -
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA-binding protein 38
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 11828 bases
Position: chrLG17:26934229-26946056
Accession: 105017332
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000004731	RRM_1	PF00076.22	3.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000011854	-	4464	XM_010881852	ENSELUP00000004731	242 (aa)	XP_010880154	UPI000577E93E

Gene Model

Click here to download ENSELUG00000005849's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000005849's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000005849	-	66	68.072	ENSELUG00000007163	rbm24a	100	61.475
ENSELUG00000005849	-	65	70.122	ENSELUG00000002970	-	99	62.550
ENSELUG00000005849	-	90	64.912	ENSELUG00000000585	-	98	64.912

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000005849	-	95	66.245	ENSG00000132819	RBM38	94	82.114	Homo_sapiens
ENSELUG00000005849	-	100	65.490	ENSAPOG00000003301	rbm38	98	65.490	Acanthochromis_polyacanthus
ENSELUG00000005849	-	100	82.329	ENSAPOG00000009939	-	100	82.731	Acanthochromis_polyacanthus
ENSELUG00000005849	-	100	80.723	ENSACIG00000012502	-	100	91.870	Amphilophus_citrinellus
ENSELUG00000005849	-	100	63.922	ENSACIG00000000010	rbm38	98	63.922	Amphilophus_citrinellus
ENSELUG00000005849	-	97	79.752	ENSAOCG00000012559	RBM38	100	82.231	Amphiprion_ocellaris
ENSELUG00000005849	-	100	65.490	ENSAOCG00000013497	-	98	65.490	Amphiprion_ocellaris
ENSELUG00000005849	-	100	65.490	ENSAPEG00000013137	rbm38	98	65.490	Amphiprion_percula
ENSELUG00000005849	-	100	79.518	ENSAPEG00000023581	-	100	81.928	Amphiprion_percula
ENSELUG00000005849	-	100	63.137	ENSATEG00000016366	rbm38	99	62.195	Anabas_testudineus
ENSELUG00000005849	-	100	81.526	ENSATEG00000016710	-	100	81.928	Anabas_testudineus
ENSELUG00000005849	-	93	66.094	ENSACAG00000016238	RBM38	89	66.094	Anolis_carolinensis
ENSELUG00000005849	-	95	67.089	ENSANAG00000031959	RBM38	81	89.000	Aotus_nancymaae
ENSELUG00000005849	-	100	80.723	ENSACLG00000019514	-	100	80.723	Astatotilapia_calliptera
ENSELUG00000005849	-	96	63.404	ENSAMXG00000038120	rbm38	98	61.633	Astyanax_mexicanus
ENSELUG00000005849	-	100	78.099	ENSAMXG00000015601	-	100	78.512	Astyanax_mexicanus
ENSELUG00000005849	-	95	65.678	ENSBTAG00000008105	RBM38	90	65.678	Bos_taurus
ENSELUG00000005849	-	59	61.972	WBGene00006321	sup-12	59	82.022	Caenorhabditis_elegans
ENSELUG00000005849	-	95	67.089	ENSCJAG00000019139	RBM38	81	89.000	Callithrix_jacchus
ENSELUG00000005849	-	95	66.949	ENSCAFG00020021943	RBM38	90	66.949	Canis_lupus_dingo
ENSELUG00000005849	-	95	64.831	ENSCHIG00000002609	RBM38	90	64.831	Capra_hircus
ENSELUG00000005849	-	95	65.823	ENSCPOG00000012781	RBM38	90	65.823	Cavia_porcellus
ENSELUG00000005849	-	95	67.089	ENSCCAG00000036872	RBM38	81	89.000	Cebus_capucinus
ENSELUG00000005849	-	95	66.667	ENSCATG00000032133	RBM38	81	89.000	Cercocebus_atys
ENSELUG00000005849	-	95	65.401	ENSCLAG00000005906	RBM38	94	65.401	Chinchilla_lanigera
ENSELUG00000005849	-	95	66.667	ENSCSAG00000015503	RBM38	90	66.667	Chlorocebus_sabaeus
ENSELUG00000005849	-	95	67.094	ENSCPBG00000024059	RBM38	100	67.094	Chrysemys_picta_bellii
ENSELUG00000005849	-	64	62.963	ENSCING00000025102	-	96	51.064	Ciona_intestinalis
ENSELUG00000005849	-	95	51.915	ENSCANG00000030105	-	80	51.915	Colobus_angolensis_palliatus
ENSELUG00000005849	-	95	63.291	ENSCGRG00001012928	Rbm38	92	63.598	Cricetulus_griseus_chok1gshd
ENSELUG00000005849	-	100	78.313	ENSCSEG00000004701	-	100	79.116	Cynoglossus_semilaevis
ENSELUG00000005849	-	79	63.776	ENSCSEG00000020943	rbm38	63	63.776	Cynoglossus_semilaevis
ENSELUG00000005849	-	99	58.498	ENSCVAG00000015952	rbm38	98	60.236	Cyprinodon_variegatus
ENSELUG00000005849	-	100	78.715	ENSCVAG00000005472	-	100	79.518	Cyprinodon_variegatus
ENSELUG00000005849	-	99	72.727	ENSDARG00000058818	rbm38	100	72.727	Danio_rerio
ENSELUG00000005849	-	95	67.094	ENSDNOG00000032004	RBM38	100	67.094	Dasypus_novemcinctus
ENSELUG00000005849	-	95	65.254	ENSECAG00000007700	RBM38	90	65.254	Equus_caballus
ENSELUG00000005849	-	95	62.605	ENSEEUG00000013489	RBM38	91	63.866	Erinaceus_europaeus
ENSELUG00000005849	-	95	66.102	ENSFCAG00000042916	RBM38	82	87.129	Felis_catus
ENSELUG00000005849	-	73	73.889	ENSFALG00000010805	RBM38	90	72.222	Ficedula_albicollis
ENSELUG00000005849	-	100	79.447	ENSFHEG00000006160	-	100	79.447	Fundulus_heteroclitus
ENSELUG00000005849	-	100	60.547	ENSFHEG00000017748	rbm38	98	60.547	Fundulus_heteroclitus
ENSELUG00000005849	-	75	82.796	ENSGMOG00000016655	-	97	85.484	Gadus_morhua
ENSELUG00000005849	-	95	66.667	ENSGALG00000026081	RBM38	100	67.094	Gallus_gallus
ENSELUG00000005849	-	94	79.221	ENSGACG00000009873	-	100	79.221	Gasterosteus_aculeatus
ENSELUG00000005849	-	95	66.234	ENSGACG00000015224	rbm38	100	66.234	Gasterosteus_aculeatus
ENSELUG00000005849	-	95	67.094	ENSGAGG00000001187	RBM38	100	67.094	Gopherus_agassizii
ENSELUG00000005849	-	100	81.224	ENSHBUG00000011778	-	100	81.224	Haplochromis_burtoni
ENSELUG00000005849	-	100	63.922	ENSHBUG00000012058	rbm38	98	63.922	Haplochromis_burtoni
ENSELUG00000005849	-	95	63.713	ENSHGLG00000015077	RBM38	90	65.823	Heterocephalus_glaber_female
ENSELUG00000005849	-	90	51.316	ENSHCOG00000019040	rbm38	90	51.316	Hippocampus_comes
ENSELUG00000005849	-	84	84.951	ENSHCOG00000005622	-	58	85.922	Hippocampus_comes
ENSELUG00000005849	-	100	74.694	ENSIPUG00000019349	-	100	72.653	Ictalurus_punctatus
ENSELUG00000005849	-	92	57.983	ENSKMAG00000012402	rbm38	98	57.983	Kryptolebias_marmoratus
ENSELUG00000005849	-	100	81.124	ENSLBEG00000016163	RBM38	100	82.731	Labrus_bergylta
ENSELUG00000005849	-	100	63.529	ENSLBEG00000018878	rbm38	98	63.529	Labrus_bergylta
ENSELUG00000005849	-	100	80.165	ENSLOCG00000003456	rbm38	100	80.165	Lepisosteus_oculatus
ENSELUG00000005849	-	95	66.667	ENSMFAG00000043808	RBM38	82	88.119	Macaca_fascicularis
ENSELUG00000005849	-	95	66.667	ENSMMUG00000031391	RBM38	81	89.000	Macaca_mulatta
ENSELUG00000005849	-	95	66.667	ENSMNEG00000034683	RBM38	81	89.000	Macaca_nemestrina
ENSELUG00000005849	-	100	81.526	ENSMAMG00000020499	RBM38	100	81.928	Mastacembelus_armatus
ENSELUG00000005849	-	100	65.882	ENSMAMG00000024135	rbm38	98	65.098	Mastacembelus_armatus
ENSELUG00000005849	-	100	63.922	ENSMZEG00005026036	rbm38	98	63.922	Maylandia_zebra
ENSELUG00000005849	-	100	81.224	ENSMZEG00005000849	-	100	81.224	Maylandia_zebra
ENSELUG00000005849	-	95	64.979	ENSMAUG00000021211	Rbm38	92	65.272	Mesocricetus_auratus
ENSELUG00000005849	-	95	66.667	ENSMICG00000038011	RBM38	100	66.667	Microcebus_murinus
ENSELUG00000005849	-	95	64.557	ENSMOCG00000008715	Rbm38	92	64.854	Microtus_ochrogaster
ENSELUG00000005849	-	100	81.526	ENSMMOG00000020051	-	100	83.133	Mola_mola
ENSELUG00000005849	-	100	62.846	ENSMODG00000016458	RBM38	100	62.451	Monodelphis_domestica
ENSELUG00000005849	-	71	71.429	ENSMALG00000022327	rbm38	72	71.676	Monopterus_albus
ENSELUG00000005849	-	79	88.660	ENSMALG00000004680	RBM38	72	88.660	Monopterus_albus
ENSELUG00000005849	-	95	63.291	MGP_CAROLIEiJ_G0024745	Rbm38	92	64.854	Mus_caroli
ENSELUG00000005849	-	95	63.291	ENSMUSG00000027510	Rbm38	92	64.854	Mus_musculus
ENSELUG00000005849	-	95	62.869	MGP_PahariEiJ_G0026186	Rbm38	92	64.435	Mus_pahari
ENSELUG00000005849	-	95	63.291	MGP_SPRETEiJ_G0025665	Rbm38	92	64.854	Mus_spretus
ENSELUG00000005849	-	76	72.251	ENSMPUG00000006518	RBM38	94	71.066	Mustela_putorius_furo
ENSELUG00000005849	-	95	65.254	ENSMLUG00000011140	RBM38	100	65.254	Myotis_lucifugus
ENSELUG00000005849	-	100	81.124	ENSNBRG00000022545	-	100	81.124	Neolamprologus_brichardi
ENSELUG00000005849	-	100	64.314	ENSNBRG00000022685	rbm38	98	64.314	Neolamprologus_brichardi
ENSELUG00000005849	-	51	73.984	ENSMEUG00000005475	-	87	73.984	Notamacropus_eugenii
ENSELUG00000005849	-	95	66.245	ENSODEG00000007980	RBM38	90	66.245	Octodon_degus
ENSELUG00000005849	-	99	64.173	ENSONIG00000017073	rbm38	100	64.173	Oreochromis_niloticus
ENSELUG00000005849	-	99	81.048	ENSONIG00000020324	-	100	81.048	Oreochromis_niloticus
ENSELUG00000005849	-	92	66.667	ENSOANG00000009259	RBM38	81	66.960	Ornithorhynchus_anatinus
ENSELUG00000005849	-	100	56.589	ENSORLG00000012154	rbm38	98	57.031	Oryzias_latipes
ENSELUG00000005849	-	100	76.096	ENSORLG00000027180	-	100	78.486	Oryzias_latipes
ENSELUG00000005849	-	100	57.422	ENSORLG00020017871	rbm38	98	57.422	Oryzias_latipes_hni
ENSELUG00000005849	-	100	76.096	ENSORLG00020020751	-	100	78.486	Oryzias_latipes_hni
ENSELUG00000005849	-	100	76.800	ENSORLG00015017040	-	100	78.800	Oryzias_latipes_hsok
ENSELUG00000005849	-	100	56.641	ENSORLG00015012606	rbm38	98	56.641	Oryzias_latipes_hsok
ENSELUG00000005849	-	100	76.305	ENSOMEG00000023912	-	100	79.920	Oryzias_melastigma
ENSELUG00000005849	-	99	58.268	ENSOMEG00000006805	rbm38	98	58.268	Oryzias_melastigma
ENSELUG00000005849	-	95	66.667	ENSOGAG00000029136	RBM38	90	66.667	Otolemur_garnettii
ENSELUG00000005849	-	95	66.102	ENSPPRG00000009507	RBM38	82	87.129	Panthera_pardus
ENSELUG00000005849	-	54	80.153	ENSPTRG00000045845	-	68	80.153	Pan_troglodytes
ENSELUG00000005849	-	76	72.251	ENSPTRG00000013661	RBM38	81	89.000	Pan_troglodytes
ENSELUG00000005849	-	95	66.667	ENSPANG00000020919	-	81	89.000	Papio_anubis
ENSELUG00000005849	-	92	54.348	ENSPANG00000033127	-	91	53.478	Papio_anubis
ENSELUG00000005849	-	100	74.486	ENSPKIG00000025417	rbm38	100	76.955	Paramormyrops_kingsleyae
ENSELUG00000005849	-	100	73.577	ENSPKIG00000018122	-	100	82.927	Paramormyrops_kingsleyae
ENSELUG00000005849	-	95	66.525	ENSPSIG00000011649	RBM38	93	66.525	Pelodiscus_sinensis
ENSELUG00000005849	-	100	74.104	ENSPMGG00000017094	-	100	75.697	Periophthalmus_magnuspinnatus
ENSELUG00000005849	-	99	60.079	ENSPMGG00000011343	rbm38	98	61.660	Periophthalmus_magnuspinnatus
ENSELUG00000005849	-	95	65.532	ENSPCIG00000013648	RBM38	92	65.532	Phascolarctos_cinereus
ENSELUG00000005849	-	100	58.301	ENSPFOG00000011658	rbm38	98	59.073	Poecilia_formosa
ENSELUG00000005849	-	100	77.689	ENSPLAG00000002500	-	100	78.088	Poecilia_latipinna
ENSELUG00000005849	-	100	57.915	ENSPLAG00000005218	rbm38	98	58.687	Poecilia_latipinna
ENSELUG00000005849	-	100	58.687	ENSPMEG00000015770	rbm38	98	59.459	Poecilia_mexicana
ENSELUG00000005849	-	100	58.301	ENSPREG00000007398	rbm38	98	59.073	Poecilia_reticulata
ENSELUG00000005849	-	95	66.245	ENSPCOG00000026201	RBM38	81	88.119	Propithecus_coquereli
ENSELUG00000005849	-	69	85.246	ENSPVAG00000006457	RBM38	67	83.871	Pteropus_vampyrus
ENSELUG00000005849	-	100	63.529	ENSPNYG00000021373	rbm38	98	63.529	Pundamilia_nyererei
ENSELUG00000005849	-	100	80.723	ENSPNYG00000019727	-	100	91.870	Pundamilia_nyererei
ENSELUG00000005849	-	100	77.273	ENSPNAG00000015123	-	99	79.577	Pygocentrus_nattereri
ENSELUG00000005849	-	96	70.690	ENSPNAG00000010596	rbm38	97	70.690	Pygocentrus_nattereri
ENSELUG00000005849	-	95	65.823	ENSRNOG00000006420	Rbm38	92	65.272	Rattus_norvegicus
ENSELUG00000005849	-	95	54.274	ENSRROG00000036388	-	89	53.846	Rhinopithecus_roxellana
ENSELUG00000005849	-	95	66.667	ENSSBOG00000031053	RBM38	92	89.000	Saimiri_boliviensis_boliviensis
ENSELUG00000005849	-	100	70.040	ENSSFOG00015004453	rbm38	100	72.112	Scleropages_formosus
ENSELUG00000005849	-	100	81.928	ENSSDUG00000021082	RBM38	100	82.329	Seriola_dumerili
ENSELUG00000005849	-	100	67.059	ENSSDUG00000022611	rbm38	98	67.059	Seriola_dumerili
ENSELUG00000005849	-	100	82.731	ENSSLDG00000011778	RBM38	100	83.133	Seriola_lalandi_dorsalis
ENSELUG00000005849	-	100	67.059	ENSSLDG00000010845	rbm38	98	67.059	Seriola_lalandi_dorsalis
ENSELUG00000005849	-	100	81.928	ENSSPAG00000020989	RBM38	100	82.329	Stegastes_partitus
ENSELUG00000005849	-	100	64.706	ENSSPAG00000011113	rbm38	98	64.706	Stegastes_partitus
ENSELUG00000005849	-	95	65.678	ENSSSCG00000007504	RBM38	90	65.678	Sus_scrofa
ENSELUG00000005849	-	100	79.600	ENSTRUG00000019869	-	100	80.800	Takifugu_rubripes
ENSELUG00000005849	-	98	63.968	ENSTRUG00000024954	rbm38	97	65.182	Takifugu_rubripes
ENSELUG00000005849	-	95	81.034	ENSTNIG00000007093	-	100	81.034	Tetraodon_nigroviridis
ENSELUG00000005849	-	95	66.667	ENSUAMG00000019780	RBM38	90	66.667	Ursus_americanus
ENSELUG00000005849	-	95	66.949	ENSVVUG00000017246	RBM38	90	66.949	Vulpes_vulpes
ENSELUG00000005849	-	95	64.167	ENSXETG00000011268	rbm38	99	65.532	Xenopus_tropicalis
ENSELUG00000005849	-	73	75.141	ENSXCOG00000017324	-	68	82.692	Xiphophorus_couchianus
ENSELUG00000005849	-	100	58.824	ENSXMAG00000023662	rbm38	98	60.000	Xiphophorus_maculatus