EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000005934 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 30818 bases
Position: chrLG07:39448802-39479619
Accession: 105031156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000004824	EST1	PF10374.9	2.8e-15	1	1
ENSELUP00000004824	EST1_DNA_bind	PF10373.9	4.8e-60	1	1
ENSELUP00000004824	PIN_4	PF13638.6	8.8e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000011690	-	9830	XM_010905427	ENSELUP00000004824	1816 (aa)	XP_010903729	-

Gene Model

Click here to download ENSELUG00000005934's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000005934's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000005934	smg6	67	56.201	ENSG00000070366	SMG6	100	61.654	Homo_sapiens
ENSELUG00000005934	smg6	99	67.323	ENSAPOG00000019448	smg6	100	65.390	Acanthochromis_polyacanthus
ENSELUG00000005934	smg6	67	56.703	ENSAMEG00000007632	SMG6	72	60.463	Ailuropoda_melanoleuca
ENSELUG00000005934	smg6	89	58.445	ENSACIG00000012997	smg6	89	74.625	Amphilophus_citrinellus
ENSELUG00000005934	smg6	96	70.470	ENSAOCG00000002630	smg6	97	65.522	Amphiprion_ocellaris
ENSELUG00000005934	smg6	96	70.470	ENSAPEG00000019101	smg6	100	65.522	Amphiprion_percula
ENSELUG00000005934	smg6	95	69.088	ENSATEG00000006483	smg6	97	64.702	Anabas_testudineus
ENSELUG00000005934	smg6	57	51.210	ENSACAG00000011783	SMG6	72	53.912	Anolis_carolinensis
ENSELUG00000005934	smg6	69	55.666	ENSANAG00000035760	SMG6	71	60.556	Aotus_nancymaae
ENSELUG00000005934	smg6	98	68.636	ENSACLG00000005288	smg6	100	65.841	Astatotilapia_calliptera
ENSELUG00000005934	smg6	58	70.971	ENSAMXG00000017326	smg6	81	69.783	Astyanax_mexicanus
ENSELUG00000005934	smg6	67	56.861	ENSBTAG00000000267	SMG6	72	60.741	Bos_taurus
ENSELUG00000005934	smg6	69	55.513	ENSCJAG00000001820	SMG6	71	60.463	Callithrix_jacchus
ENSELUG00000005934	smg6	67	56.477	ENSCAFG00000019260	SMG6	72	60.278	Canis_familiaris
ENSELUG00000005934	smg6	67	56.477	ENSCAFG00020009770	SMG6	72	60.278	Canis_lupus_dingo
ENSELUG00000005934	smg6	67	56.648	ENSCHIG00000021998	SMG6	72	60.556	Capra_hircus
ENSELUG00000005934	smg6	69	54.927	ENSTSYG00000003406	SMG6	100	61.466	Carlito_syrichta
ENSELUG00000005934	smg6	60	57.477	ENSCAPG00000016197	SMG6	67	56.776	Cavia_aperea
ENSELUG00000005934	smg6	67	55.451	ENSCPOG00000014878	SMG6	85	62.857	Cavia_porcellus
ENSELUG00000005934	smg6	69	55.760	ENSCCAG00000035801	SMG6	71	60.648	Cebus_capucinus
ENSELUG00000005934	smg6	69	55.241	ENSCATG00000031956	SMG6	71	60.093	Cercocebus_atys
ENSELUG00000005934	smg6	69	54.916	ENSCLAG00000006748	SMG6	84	62.857	Chinchilla_lanigera
ENSELUG00000005934	smg6	69	55.471	ENSCSAG00000013800	SMG6	71	60.370	Chlorocebus_sabaeus
ENSELUG00000005934	smg6	71	55.356	ENSCPBG00000020369	SMG6	71	60.556	Chrysemys_picta_bellii
ENSELUG00000005934	smg6	69	55.318	ENSCANG00000031764	SMG6	100	62.030	Colobus_angolensis_palliatus
ENSELUG00000005934	smg6	67	51.060	ENSCGRG00000007782	Smg6	72	54.613	Cricetulus_griseus_crigri
ENSELUG00000005934	smg6	86	65.634	ENSCSEG00000012757	smg6	94	62.697	Cynoglossus_semilaevis
ENSELUG00000005934	smg6	94	67.036	ENSCVAG00000012789	smg6	91	68.440	Cyprinodon_variegatus
ENSELUG00000005934	smg6	88	67.687	ENSDARG00000100481	smg6	84	66.000	Danio_rerio
ENSELUG00000005934	smg6	67	55.808	ENSDNOG00000048283	SMG6	71	60.000	Dasypus_novemcinctus
ENSELUG00000005934	smg6	67	52.541	ENSDORG00000016614	Smg6	85	62.381	Dipodomys_ordii
ENSELUG00000005934	smg6	64	95.122	ENSETEG00000016790	SMG6	64	95.122	Echinops_telfairi
ENSELUG00000005934	smg6	55	47.168	ENSEBUG00000005059	smg6	59	49.476	Eptatretus_burgeri
ENSELUG00000005934	smg6	69	55.658	ENSEASG00005009318	SMG6	71	60.482	Equus_asinus_asinus
ENSELUG00000005934	smg6	69	55.658	ENSECAG00000006519	SMG6	71	60.482	Equus_caballus
ENSELUG00000005934	smg6	64	57.293	ENSEEUG00000003493	SMG6	72	51.437	Erinaceus_europaeus
ENSELUG00000005934	smg6	69	55.957	ENSFCAG00000028817	SMG6	72	60.648	Felis_catus
ENSELUG00000005934	smg6	70	55.640	ENSFALG00000006538	SMG6	73	61.055	Ficedula_albicollis
ENSELUG00000005934	smg6	67	56.088	ENSFDAG00000015106	SMG6	84	62.381	Fukomys_damarensis
ENSELUG00000005934	smg6	95	67.245	ENSFHEG00000013282	smg6	81	70.745	Fundulus_heteroclitus
ENSELUG00000005934	smg6	69	55.718	ENSGALG00000003108	SMG6	70	60.240	Gallus_gallus
ENSELUG00000005934	smg6	94	68.258	ENSGAFG00000000379	smg6	78	71.310	Gambusia_affinis
ENSELUG00000005934	smg6	70	66.793	ENSGACG00000020521	smg6	97	65.178	Gasterosteus_aculeatus
ENSELUG00000005934	smg6	67	56.349	ENSGAGG00000025617	SMG6	73	59.141	Gopherus_agassizii
ENSELUG00000005934	smg6	69	55.471	ENSGGOG00000017156	SMG6	71	60.370	Gorilla_gorilla
ENSELUG00000005934	smg6	98	68.717	ENSHBUG00000021311	smg6	100	63.555	Haplochromis_burtoni
ENSELUG00000005934	smg6	69	55.030	ENSHGLG00000012882	SMG6	84	61.905	Heterocephalus_glaber_female
ENSELUG00000005934	smg6	69	55.107	ENSHGLG00100017815	SMG6	84	61.905	Heterocephalus_glaber_male
ENSELUG00000005934	smg6	61	63.433	ENSHCOG00000008761	smg6	83	65.610	Hippocampus_comes
ENSELUG00000005934	smg6	89	64.562	ENSIPUG00000012493	smg6	91	60.250	Ictalurus_punctatus
ENSELUG00000005934	smg6	67	56.201	ENSSTOG00000028127	SMG6	85	62.381	Ictidomys_tridecemlineatus
ENSELUG00000005934	smg6	52	51.472	ENSJJAG00000015367	Smg6	63	54.945	Jaculus_jaculus
ENSELUG00000005934	smg6	71	68.829	ENSKMAG00000000279	smg6	87	62.912	Kryptolebias_marmoratus
ENSELUG00000005934	smg6	89	69.784	ENSLBEG00000002184	smg6	90	73.737	Labrus_bergylta
ENSELUG00000005934	smg6	69	67.289	ENSLOCG00000006448	smg6	100	67.112	Lepisosteus_oculatus
ENSELUG00000005934	smg6	71	54.322	ENSLAFG00000001261	SMG6	71	60.000	Loxodonta_africana
ENSELUG00000005934	smg6	69	55.471	ENSMFAG00000003394	SMG6	71	60.370	Macaca_fascicularis
ENSELUG00000005934	smg6	69	55.318	ENSMMUG00000023161	SMG6	71	60.185	Macaca_mulatta
ENSELUG00000005934	smg6	69	53.072	ENSMNEG00000044592	SMG6	71	57.792	Macaca_nemestrina
ENSELUG00000005934	smg6	65	63.291	ENSMLEG00000029353	SMG6	71	62.929	Mandrillus_leucophaeus
ENSELUG00000005934	smg6	94	70.639	ENSMAMG00000020119	smg6	100	63.883	Mastacembelus_armatus
ENSELUG00000005934	smg6	98	68.561	ENSMZEG00005024736	smg6	89	74.513	Maylandia_zebra
ENSELUG00000005934	smg6	51	51.620	ENSMGAG00000005401	-	61	59.856	Meleagris_gallopavo
ENSELUG00000005934	smg6	69	55.487	ENSMICG00000012913	SMG6	71	60.426	Microcebus_murinus
ENSELUG00000005934	smg6	86	66.540	ENSMMOG00000010883	smg6	96	65.446	Mola_mola
ENSELUG00000005934	smg6	67	56.436	ENSMODG00000010622	SMG6	72	59.982	Monodelphis_domestica
ENSELUG00000005934	smg6	92	67.464	ENSMALG00000001106	smg6	99	64.986	Monopterus_albus
ENSELUG00000005934	smg6	67	56.142	MGP_CAROLIEiJ_G0016729	Smg6	91	68.693	Mus_caroli
ENSELUG00000005934	smg6	67	56.324	ENSMUSG00000038290	Smg6	91	68.997	Mus_musculus
ENSELUG00000005934	smg6	67	55.756	MGP_PahariEiJ_G0017866	Smg6	91	68.693	Mus_pahari
ENSELUG00000005934	smg6	67	56.245	MGP_SPRETEiJ_G0017572	Smg6	91	68.693	Mus_spretus
ENSELUG00000005934	smg6	67	56.850	ENSMPUG00000013046	SMG6	72	60.463	Mustela_putorius_furo
ENSELUG00000005934	smg6	69	55.428	ENSMLUG00000005739	SMG6	72	60.240	Myotis_lucifugus
ENSELUG00000005934	smg6	67	56.122	ENSNGAG00000007287	Smg6	85	62.381	Nannospalax_galili
ENSELUG00000005934	smg6	95	66.540	ENSNBRG00000009511	smg6	83	73.606	Neolamprologus_brichardi
ENSELUG00000005934	smg6	69	55.394	ENSNLEG00000017171	SMG6	100	61.654	Nomascus_leucogenys
ENSELUG00000005934	smg6	69	54.475	ENSMEUG00000015804	SMG6	73	58.834	Notamacropus_eugenii
ENSELUG00000005934	smg6	69	49.618	ENSODEG00000008038	SMG6	81	59.412	Octodon_degus
ENSELUG00000005934	smg6	98	68.453	ENSONIG00000005594	smg6	100	63.542	Oreochromis_niloticus
ENSELUG00000005934	smg6	67	56.053	ENSOCUG00000013018	SMG6	71	60.093	Oryctolagus_cuniculus
ENSELUG00000005934	smg6	93	68.262	ENSORLG00000003317	smg6	76	70.929	Oryzias_latipes
ENSELUG00000005934	smg6	93	67.786	ENSORLG00020015343	smg6	76	70.599	Oryzias_latipes_hni
ENSELUG00000005934	smg6	93	68.022	ENSORLG00015020454	smg6	94	61.555	Oryzias_latipes_hsok
ENSELUG00000005934	smg6	81	68.526	ENSOMEG00000010838	smg6	94	63.307	Oryzias_melastigma
ENSELUG00000005934	smg6	69	55.209	ENSOGAG00000004483	SMG6	71	60.185	Otolemur_garnettii
ENSELUG00000005934	smg6	67	56.727	ENSOARG00000015076	SMG6	73	60.648	Ovis_aries
ENSELUG00000005934	smg6	69	55.318	ENSPPAG00000043296	SMG6	71	60.278	Pan_paniscus
ENSELUG00000005934	smg6	69	55.957	ENSPPRG00000014581	SMG6	72	60.648	Panthera_pardus
ENSELUG00000005934	smg6	69	55.957	ENSPTIG00000008925	SMG6	100	62.030	Panthera_tigris_altaica
ENSELUG00000005934	smg6	69	55.394	ENSPTRG00000008544	SMG6	100	61.654	Pan_troglodytes
ENSELUG00000005934	smg6	69	55.394	ENSPANG00000024588	SMG6	71	60.278	Papio_anubis
ENSELUG00000005934	smg6	63	52.848	ENSPSIG00000006660	SMG6	67	58.485	Pelodiscus_sinensis
ENSELUG00000005934	smg6	68	73.217	ENSPMGG00000000844	smg6	80	72.275	Periophthalmus_magnuspinnatus
ENSELUG00000005934	smg6	67	56.358	ENSPEMG00000020707	Smg6	86	62.857	Peromyscus_maniculatus_bairdii
ENSELUG00000005934	smg6	86	65.695	ENSPFOG00000012035	smg6	85	70.545	Poecilia_formosa
ENSELUG00000005934	smg6	87	64.654	ENSPLAG00000017660	smg6	78	71.244	Poecilia_latipinna
ENSELUG00000005934	smg6	87	65.022	ENSPMEG00000000258	smg6	78	71.429	Poecilia_mexicana
ENSELUG00000005934	smg6	81	68.272	ENSPREG00000010066	smg6	78	71.587	Poecilia_reticulata
ENSELUG00000005934	smg6	69	51.606	ENSPPYG00000007790	SMG6	71	55.207	Pongo_abelii
ENSELUG00000005934	smg6	64	63.785	ENSPCAG00000000552	SMG6	71	57.275	Procavia_capensis
ENSELUG00000005934	smg6	68	55.910	ENSPCOG00000020925	SMG6	71	60.370	Propithecus_coquereli
ENSELUG00000005934	smg6	64	64.974	ENSPVAG00000002159	SMG6	72	56.481	Pteropus_vampyrus
ENSELUG00000005934	smg6	87	67.123	ENSPNYG00000024151	smg6	99	62.045	Pundamilia_nyererei
ENSELUG00000005934	smg6	81	62.568	ENSPNAG00000015480	smg6	88	59.551	Pygocentrus_nattereri
ENSELUG00000005934	smg6	70	54.491	ENSRNOG00000003041	Smg6	91	68.997	Rattus_norvegicus
ENSELUG00000005934	smg6	69	55.547	ENSRBIG00000024746	SMG6	71	60.370	Rhinopithecus_bieti
ENSELUG00000005934	smg6	69	55.471	ENSRROG00000030423	SMG6	100	62.030	Rhinopithecus_roxellana
ENSELUG00000005934	smg6	67	56.659	ENSSBOG00000022518	SMG6	71	58.889	Saimiri_boliviensis_boliviensis
ENSELUG00000005934	smg6	67	56.304	ENSSHAG00000010045	SMG6	71	60.278	Sarcophilus_harrisii
ENSELUG00000005934	smg6	98	62.307	ENSSFOG00015005436	smg6	77	68.100	Scleropages_formosus
ENSELUG00000005934	smg6	100	57.637	ENSSMAG00000019777	smg6	100	64.822	Scophthalmus_maximus
ENSELUG00000005934	smg6	99	68.755	ENSSDUG00000016412	smg6	98	65.904	Seriola_dumerili
ENSELUG00000005934	smg6	89	68.223	ENSSLDG00000020747	smg6	97	64.183	Seriola_lalandi_dorsalis
ENSELUG00000005934	smg6	70	53.408	ENSSPUG00000007152	SMG6	72	57.453	Sphenodon_punctatus
ENSELUG00000005934	smg6	96	70.362	ENSSPAG00000015633	smg6	100	65.761	Stegastes_partitus
ENSELUG00000005934	smg6	67	56.861	ENSSSCG00000017826	SMG6	72	60.833	Sus_scrofa
ENSELUG00000005934	smg6	67	56.566	ENSTGUG00000005836	SMG6	72	60.463	Taeniopygia_guttata
ENSELUG00000005934	smg6	76	63.105	ENSTRUG00000000358	smg6	73	71.107	Takifugu_rubripes
ENSELUG00000005934	smg6	81	69.316	ENSTNIG00000016164	smg6	96	68.178	Tetraodon_nigroviridis
ENSELUG00000005934	smg6	64	63.959	ENSTBEG00000011424	SMG6	68	63.959	Tupaia_belangeri
ENSELUG00000005934	smg6	67	56.535	ENSUAMG00000025152	SMG6	73	59.982	Ursus_americanus
ENSELUG00000005934	smg6	67	56.782	ENSUMAG00000009306	SMG6	73	60.463	Ursus_maritimus
ENSELUG00000005934	smg6	56	95.238	ENSVPAG00000000225	SMG6	56	95.238	Vicugna_pacos
ENSELUG00000005934	smg6	67	56.763	ENSVVUG00000021727	SMG6	74	60.335	Vulpes_vulpes
ENSELUG00000005934	smg6	69	52.451	ENSXETG00000023799	SMG6	69	57.478	Xenopus_tropicalis
ENSELUG00000005934	smg6	84	65.049	ENSXCOG00000009867	smg6	77	71.617	Xiphophorus_couchianus
ENSELUG00000005934	smg6	82	68.107	ENSXMAG00000010321	smg6	77	71.191	Xiphophorus_maculatus