EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000005977 (Gene tree)
Gene ID: 105016281
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 16136 bases
Position: chrLG16:10250557-10266692
Accession: 105016281
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000029147	SF3b1	PF08920.10	3.7e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000011616	-	4972	XM_010879998	ENSELUP00000029147	1349 (aa)	XP_010878300	UPI000577957B

Gene Model

Click here to download ENSELUG00000005977's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000005977's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000005977	sf3b1	98	92.981	ENSG00000115524	SF3B1	100	93.132	Homo_sapiens
ENSELUG00000005977	sf3b1	98	96.450	ENSAPOG00000011894	sf3b1	100	96.450	Acanthochromis_polyacanthus
ENSELUG00000005977	sf3b1	97	92.863	ENSAMEG00000013809	SF3B1	99	93.014	Ailuropoda_melanoleuca
ENSELUG00000005977	sf3b1	98	95.166	ENSACIG00000020910	sf3b1	97	95.166	Amphilophus_citrinellus
ENSELUG00000005977	sf3b1	98	96.450	ENSAOCG00000004478	sf3b1	100	96.450	Amphiprion_ocellaris
ENSELUG00000005977	sf3b1	98	96.450	ENSAPEG00000012937	sf3b1	100	96.450	Amphiprion_percula
ENSELUG00000005977	sf3b1	98	96.593	ENSATEG00000020435	sf3b1	100	96.526	Anabas_testudineus
ENSELUG00000005977	sf3b1	97	93.004	ENSAPLG00000003993	SF3B1	99	92.776	Anas_platyrhynchos
ENSELUG00000005977	sf3b1	98	93.051	ENSACAG00000009612	SF3B1	100	92.825	Anolis_carolinensis
ENSELUG00000005977	sf3b1	98	92.981	ENSANAG00000021577	SF3B1	100	94.048	Aotus_nancymaae
ENSELUG00000005977	sf3b1	98	95.091	ENSACLG00000023470	sf3b1	100	95.091	Astatotilapia_calliptera
ENSELUG00000005977	sf3b1	98	96.299	ENSAMXG00000002219	sf3b1	100	96.299	Astyanax_mexicanus
ENSELUG00000005977	sf3b1	98	92.981	ENSBTAG00000008915	SF3B1	100	93.132	Bos_taurus
ENSELUG00000005977	sf3b1	96	64.929	WBGene00011605	sftb-1	98	64.929	Caenorhabditis_elegans
ENSELUG00000005977	sf3b1	98	92.981	ENSCJAG00000003902	SF3B1	100	93.132	Callithrix_jacchus
ENSELUG00000005977	sf3b1	98	92.981	ENSCAFG00000010826	SF3B1	100	93.132	Canis_familiaris
ENSELUG00000005977	sf3b1	98	92.981	ENSCAFG00020004750	SF3B1	100	93.132	Canis_lupus_dingo
ENSELUG00000005977	sf3b1	98	92.981	ENSCHIG00000015226	SF3B1	100	93.132	Capra_hircus
ENSELUG00000005977	sf3b1	98	92.906	ENSTSYG00000009214	SF3B1	100	93.057	Carlito_syrichta
ENSELUG00000005977	sf3b1	98	92.808	ENSCAPG00000006547	SF3B1	99	92.960	Cavia_aperea
ENSELUG00000005977	sf3b1	98	92.808	ENSCPOG00000009353	SF3B1	100	93.080	Cavia_porcellus
ENSELUG00000005977	sf3b1	98	92.981	ENSCCAG00000020506	SF3B1	100	93.132	Cebus_capucinus
ENSELUG00000005977	sf3b1	98	92.981	ENSCATG00000035735	SF3B1	100	93.132	Cercocebus_atys
ENSELUG00000005977	sf3b1	97	92.933	ENSCLAG00000014767	SF3B1	99	93.085	Chinchilla_lanigera
ENSELUG00000005977	sf3b1	98	92.981	ENSCSAG00000011505	SF3B1	100	93.132	Chlorocebus_sabaeus
ENSELUG00000005977	sf3b1	74	92.360	ENSCHOG00000009860	SF3B1	76	92.360	Choloepus_hoffmanni
ENSELUG00000005977	sf3b1	98	92.976	ENSCPBG00000021902	SF3B1	100	92.976	Chrysemys_picta_bellii
ENSELUG00000005977	sf3b1	67	77.862	ENSCING00000002558	-	99	77.863	Ciona_intestinalis
ENSELUG00000005977	sf3b1	98	79.537	ENSCSAVG00000002559	-	99	79.388	Ciona_savignyi
ENSELUG00000005977	sf3b1	98	92.981	ENSCANG00000029415	SF3B1	100	93.132	Colobus_angolensis_palliatus
ENSELUG00000005977	sf3b1	98	92.981	ENSCGRG00001016990	Sf3b1	100	93.132	Cricetulus_griseus_chok1gshd
ENSELUG00000005977	sf3b1	98	92.981	ENSCGRG00000005301	Sf3b1	100	93.132	Cricetulus_griseus_crigri
ENSELUG00000005977	sf3b1	98	91.843	ENSCSEG00000003860	sf3b1	100	91.843	Cynoglossus_semilaevis
ENSELUG00000005977	sf3b1	94	95.991	ENSCVAG00000003680	sf3b1	99	95.991	Cyprinodon_variegatus
ENSELUG00000005977	sf3b1	98	95.619	ENSDARG00000056138	sf3b1	100	95.619	Danio_rerio
ENSELUG00000005977	sf3b1	98	92.911	ENSDNOG00000011754	SF3B1	100	93.062	Dasypus_novemcinctus
ENSELUG00000005977	sf3b1	97	91.027	ENSDORG00000002399	Sf3b1	100	90.722	Dipodomys_ordii
ENSELUG00000005977	sf3b1	98	75.182	FBgn0031266	Sf3b1	100	75.055	Drosophila_melanogaster
ENSELUG00000005977	sf3b1	81	91.629	ENSETEG00000009188	SF3B1	100	91.811	Echinops_telfairi
ENSELUG00000005977	sf3b1	97	85.152	ENSEBUG00000004325	sf3b1	100	87.500	Eptatretus_burgeri
ENSELUG00000005977	sf3b1	99	92.584	ENSEASG00005020159	SF3B1	98	92.734	Equus_asinus_asinus
ENSELUG00000005977	sf3b1	99	92.584	ENSECAG00000021657	SF3B1	98	92.734	Equus_caballus
ENSELUG00000005977	sf3b1	85	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSELUG00000005977	sf3b1	98	92.981	ENSFCAG00000005038	SF3B1	100	93.132	Felis_catus
ENSELUG00000005977	sf3b1	97	92.928	ENSFALG00000004281	SF3B1	99	92.700	Ficedula_albicollis
ENSELUG00000005977	sf3b1	98	92.981	ENSFDAG00000017510	SF3B1	100	93.132	Fukomys_damarensis
ENSELUG00000005977	sf3b1	98	95.166	ENSFHEG00000014333	sf3b1	100	95.166	Fundulus_heteroclitus
ENSELUG00000005977	sf3b1	98	96.453	ENSGMOG00000006773	sf3b1	100	96.453	Gadus_morhua
ENSELUG00000005977	sf3b1	98	93.051	ENSGALG00000008038	SF3B1	100	92.825	Gallus_gallus
ENSELUG00000005977	sf3b1	97	96.166	ENSGAFG00000000704	sf3b1	100	96.166	Gambusia_affinis
ENSELUG00000005977	sf3b1	98	96.226	ENSGACG00000008839	sf3b1	100	96.226	Gasterosteus_aculeatus
ENSELUG00000005977	sf3b1	99	91.692	ENSGAGG00000017478	SF3B1	100	92.348	Gopherus_agassizii
ENSELUG00000005977	sf3b1	98	87.737	ENSGGOG00000009264	SF3B1	99	86.134	Gorilla_gorilla
ENSELUG00000005977	sf3b1	98	95.159	ENSHBUG00000007705	sf3b1	99	95.159	Haplochromis_burtoni
ENSELUG00000005977	sf3b1	97	92.933	ENSHGLG00000008285	-	99	93.085	Heterocephalus_glaber_female
ENSELUG00000005977	sf3b1	97	90.957	ENSHGLG00100005535	-	99	91.109	Heterocephalus_glaber_male
ENSELUG00000005977	sf3b1	98	95.786	ENSHCOG00000016775	sf3b1	100	95.786	Hippocampus_comes
ENSELUG00000005977	sf3b1	98	96.148	ENSIPUG00000013171	sf3b1	100	96.148	Ictalurus_punctatus
ENSELUG00000005977	sf3b1	98	92.981	ENSSTOG00000011034	SF3B1	100	93.132	Ictidomys_tridecemlineatus
ENSELUG00000005977	sf3b1	97	92.906	ENSJJAG00000010903	Sf3b1	99	93.059	Jaculus_jaculus
ENSELUG00000005977	sf3b1	98	95.852	ENSKMAG00000004009	sf3b1	100	95.852	Kryptolebias_marmoratus
ENSELUG00000005977	sf3b1	98	95.921	ENSLBEG00000022208	sf3b1	100	95.921	Labrus_bergylta
ENSELUG00000005977	sf3b1	97	89.947	ENSLACG00000014832	SF3B1	99	89.947	Latimeria_chalumnae
ENSELUG00000005977	sf3b1	98	95.561	ENSLOCG00000003899	sf3b1	100	95.561	Lepisosteus_oculatus
ENSELUG00000005977	sf3b1	98	92.981	ENSLAFG00000001956	SF3B1	100	93.132	Loxodonta_africana
ENSELUG00000005977	sf3b1	97	92.933	ENSMMUG00000022430	SF3B1	99	93.085	Macaca_mulatta
ENSELUG00000005977	sf3b1	98	92.981	ENSMNEG00000042333	SF3B1	100	94.048	Macaca_nemestrina
ENSELUG00000005977	sf3b1	92	88.160	ENSMLEG00000026141	SF3B1	98	88.099	Mandrillus_leucophaeus
ENSELUG00000005977	sf3b1	98	96.375	ENSMAMG00000010241	sf3b1	100	96.375	Mastacembelus_armatus
ENSELUG00000005977	sf3b1	98	95.091	ENSMZEG00005021254	sf3b1	100	95.091	Maylandia_zebra
ENSELUG00000005977	sf3b1	97	92.395	ENSMGAG00000007017	SF3B1	99	92.167	Meleagris_gallopavo
ENSELUG00000005977	sf3b1	97	88.754	ENSMAUG00000009071	Sf3b1	99	88.906	Mesocricetus_auratus
ENSELUG00000005977	sf3b1	98	92.906	ENSMICG00000013879	SF3B1	100	93.057	Microcebus_murinus
ENSELUG00000005977	sf3b1	98	88.686	ENSMOCG00000000455	Sf3b1	99	88.686	Microtus_ochrogaster
ENSELUG00000005977	sf3b1	82	95.672	ENSMMOG00000000475	sf3b1	100	95.672	Mola_mola
ENSELUG00000005977	sf3b1	98	92.528	ENSMODG00000012275	SF3B1	100	92.453	Monodelphis_domestica
ENSELUG00000005977	sf3b1	98	96.148	ENSMALG00000017211	sf3b1	100	96.148	Monopterus_albus
ENSELUG00000005977	sf3b1	98	92.981	MGP_CAROLIEiJ_G0014141	Sf3b1	100	93.132	Mus_caroli
ENSELUG00000005977	sf3b1	98	92.981	ENSMUSG00000025982	Sf3b1	100	93.132	Mus_musculus
ENSELUG00000005977	sf3b1	98	92.981	MGP_SPRETEiJ_G0014947	Sf3b1	100	93.132	Mus_spretus
ENSELUG00000005977	sf3b1	98	92.981	ENSMPUG00000007799	SF3B1	100	93.132	Mustela_putorius_furo
ENSELUG00000005977	sf3b1	98	91.849	ENSMLUG00000000840	SF3B1	100	92.000	Myotis_lucifugus
ENSELUG00000005977	sf3b1	98	92.657	ENSNGAG00000021884	-	100	92.808	Nannospalax_galili
ENSELUG00000005977	sf3b1	98	90.566	ENSNBRG00000015816	sf3b1	100	90.491	Neolamprologus_brichardi
ENSELUG00000005977	sf3b1	98	92.981	ENSNLEG00000006861	SF3B1	100	93.132	Nomascus_leucogenys
ENSELUG00000005977	sf3b1	68	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSELUG00000005977	sf3b1	98	82.642	ENSOPRG00000008596	SF3B1	100	82.642	Ochotona_princeps
ENSELUG00000005977	sf3b1	98	92.981	ENSODEG00000011153	-	100	93.132	Octodon_degus
ENSELUG00000005977	sf3b1	98	95.091	ENSONIG00000013758	sf3b1	100	95.091	Oreochromis_niloticus
ENSELUG00000005977	sf3b1	80	96.033	ENSOCUG00000012722	-	96	96.033	Oryctolagus_cuniculus
ENSELUG00000005977	sf3b1	98	95.242	ENSORLG00000020219	sf3b1	100	95.242	Oryzias_latipes
ENSELUG00000005977	sf3b1	98	95.242	ENSORLG00020001746	sf3b1	100	95.242	Oryzias_latipes_hni
ENSELUG00000005977	sf3b1	63	92.849	ENSORLG00015001759	sf3b1	98	92.849	Oryzias_latipes_hsok
ENSELUG00000005977	sf3b1	98	95.468	ENSOMEG00000019231	sf3b1	100	95.468	Oryzias_melastigma
ENSELUG00000005977	sf3b1	98	92.981	ENSOARG00000015374	SF3B1	100	93.132	Ovis_aries
ENSELUG00000005977	sf3b1	98	92.981	ENSPPAG00000035007	SF3B1	100	93.132	Pan_paniscus
ENSELUG00000005977	sf3b1	98	92.981	ENSPPRG00000009090	SF3B1	100	93.132	Panthera_pardus
ENSELUG00000005977	sf3b1	98	92.981	ENSPTIG00000021557	SF3B1	100	93.132	Panthera_tigris_altaica
ENSELUG00000005977	sf3b1	97	85.747	ENSPTRG00000012771	SF3B1	99	85.898	Pan_troglodytes
ENSELUG00000005977	sf3b1	98	92.981	ENSPANG00000013417	SF3B1	100	93.132	Papio_anubis
ENSELUG00000005977	sf3b1	98	96.375	ENSPKIG00000000784	sf3b1	100	96.375	Paramormyrops_kingsleyae
ENSELUG00000005977	sf3b1	97	92.161	ENSPSIG00000017222	SF3B1	98	91.933	Pelodiscus_sinensis
ENSELUG00000005977	sf3b1	89	95.583	ENSPMGG00000004330	sf3b1	99	95.583	Periophthalmus_magnuspinnatus
ENSELUG00000005977	sf3b1	97	92.933	ENSPEMG00000010699	Sf3b1	100	93.085	Peromyscus_maniculatus_bairdii
ENSELUG00000005977	sf3b1	98	88.328	ENSPMAG00000001311	sf3b1	100	88.789	Petromyzon_marinus
ENSELUG00000005977	sf3b1	98	92.604	ENSPCIG00000010642	SF3B1	100	92.528	Phascolarctos_cinereus
ENSELUG00000005977	sf3b1	98	96.000	ENSPFOG00000000073	sf3b1	100	96.000	Poecilia_formosa
ENSELUG00000005977	sf3b1	98	96.073	ENSPLAG00000002293	sf3b1	100	96.073	Poecilia_latipinna
ENSELUG00000005977	sf3b1	99	95.805	ENSPMEG00000000446	sf3b1	99	95.805	Poecilia_mexicana
ENSELUG00000005977	sf3b1	98	96.224	ENSPREG00000019652	sf3b1	100	96.224	Poecilia_reticulata
ENSELUG00000005977	sf3b1	80	96.953	ENSPPYG00000013044	SF3B1	100	96.953	Pongo_abelii
ENSELUG00000005977	sf3b1	98	92.830	ENSPCAG00000009292	SF3B1	100	92.981	Procavia_capensis
ENSELUG00000005977	sf3b1	98	92.906	ENSPCOG00000024074	SF3B1	100	93.057	Propithecus_coquereli
ENSELUG00000005977	sf3b1	98	92.981	ENSPVAG00000008302	SF3B1	100	93.132	Pteropus_vampyrus
ENSELUG00000005977	sf3b1	98	95.015	ENSPNYG00000014939	sf3b1	100	95.015	Pundamilia_nyererei
ENSELUG00000005977	sf3b1	98	96.224	ENSPNAG00000008288	sf3b1	100	96.224	Pygocentrus_nattereri
ENSELUG00000005977	sf3b1	98	92.981	ENSRNOG00000013516	Sf3b1	100	93.132	Rattus_norvegicus
ENSELUG00000005977	sf3b1	98	89.267	ENSRBIG00000026096	SF3B1	100	89.418	Rhinopithecus_bieti
ENSELUG00000005977	sf3b1	98	92.981	ENSRROG00000031308	SF3B1	100	93.132	Rhinopithecus_roxellana
ENSELUG00000005977	sf3b1	98	92.981	ENSSBOG00000020080	SF3B1	100	93.132	Saimiri_boliviensis_boliviensis
ENSELUG00000005977	sf3b1	98	92.528	ENSSHAG00000017564	SF3B1	100	92.453	Sarcophilus_harrisii
ENSELUG00000005977	sf3b1	98	96.375	ENSSFOG00015021535	sf3b1	100	96.375	Scleropages_formosus
ENSELUG00000005977	sf3b1	98	95.997	ENSSMAG00000013977	sf3b1	99	95.921	Scophthalmus_maximus
ENSELUG00000005977	sf3b1	98	96.450	ENSSDUG00000017422	sf3b1	100	96.450	Seriola_dumerili
ENSELUG00000005977	sf3b1	98	96.375	ENSSLDG00000019495	sf3b1	100	96.375	Seriola_lalandi_dorsalis
ENSELUG00000005977	sf3b1	73	98.768	ENSSARG00000007016	SF3B1	76	98.768	Sorex_araneus
ENSELUG00000005977	sf3b1	98	92.900	ENSSPUG00000000410	SF3B1	100	92.674	Sphenodon_punctatus
ENSELUG00000005977	sf3b1	99	95.877	ENSSPAG00000010451	sf3b1	99	95.877	Stegastes_partitus
ENSELUG00000005977	sf3b1	90	92.479	ENSSSCG00000016075	SF3B1	100	94.048	Sus_scrofa
ENSELUG00000005977	sf3b1	98	93.051	ENSTGUG00000010553	SF3B1	100	92.825	Taeniopygia_guttata
ENSELUG00000005977	sf3b1	98	96.148	ENSTRUG00000015534	sf3b1	100	96.148	Takifugu_rubripes
ENSELUG00000005977	sf3b1	82	97.107	ENSTBEG00000008714	SF3B1	93	97.107	Tupaia_belangeri
ENSELUG00000005977	sf3b1	91	93.300	ENSTTRG00000003414	SF3B1	92	93.300	Tursiops_truncatus
ENSELUG00000005977	sf3b1	92	82.532	ENSUAMG00000018506	SF3B1	99	97.773	Ursus_americanus
ENSELUG00000005977	sf3b1	98	92.981	ENSUMAG00000020945	SF3B1	100	93.132	Ursus_maritimus
ENSELUG00000005977	sf3b1	93	93.268	ENSVPAG00000005798	SF3B1	96	93.268	Vicugna_pacos
ENSELUG00000005977	sf3b1	99	92.584	ENSVVUG00000025948	SF3B1	95	92.734	Vulpes_vulpes
ENSELUG00000005977	sf3b1	98	91.623	ENSXETG00000013339	sf3b1	100	91.623	Xenopus_tropicalis
ENSELUG00000005977	sf3b1	98	91.767	ENSXCOG00000018086	sf3b1	100	91.843	Xiphophorus_couchianus
ENSELUG00000005977	sf3b1	98	95.997	ENSXMAG00000007369	sf3b1	100	96.098	Xiphophorus_maculatus