EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000006033 (Gene tree)
Gene ID: 105026916
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 6927 bases
Position: chrLG08:6479523-6486449
Accession: 105026916
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000004939	RRM_1	PF00076.22	6.6e-61	1	4
ENSELUP00000004939	RRM_1	PF00076.22	6.6e-61	2	4
ENSELUP00000004939	RRM_1	PF00076.22	6.6e-61	3	4
ENSELUP00000004939	RRM_1	PF00076.22	6.6e-61	4	4
ENSELUP00000004920	RRM_1	PF00076.22	7.2e-57	1	4
ENSELUP00000004920	RRM_1	PF00076.22	7.2e-57	2	4
ENSELUP00000004920	RRM_1	PF00076.22	7.2e-57	3	4
ENSELUP00000004920	RRM_1	PF00076.22	7.2e-57	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000011522	-	2774	-	ENSELUP00000004920	639 (aa)	-	-
ENSELUT00000011487	-	3111	XM_010898714	ENSELUP00000004939	670 (aa)	XP_010897016	UPI000576CD29

Gene Model

Click here to download ENSELUG00000006033's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000006033's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000006033	ncl	63	47.991	ENSELUG00000022826	-	80	50.398
ENSELUG00000006033	ncl	52	32.768	ENSELUG00000003614	pabpc1a	59	30.508
ENSELUG00000006033	ncl	51	33.793	ENSELUG00000001811	pabpc1l	64	31.034
ENSELUG00000006033	ncl	52	32.768	ENSELUG00000015062	-	59	30.508

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000006033	ncl	56	75.132	ENSAPOG00000023888	ncl	70	71.058	Acanthochromis_polyacanthus
ENSELUG00000006033	ncl	62	40.682	ENSAPOG00000014534	-	67	41.624	Acanthochromis_polyacanthus
ENSELUG00000006033	ncl	57	70.263	ENSACIG00000013234	ncl	62	70.106	Amphilophus_citrinellus
ENSELUG00000006033	ncl	61	40.920	ENSAOCG00000014792	-	61	41.860	Amphiprion_ocellaris
ENSELUG00000006033	ncl	56	75.397	ENSAOCG00000003133	ncl	60	74.648	Amphiprion_ocellaris
ENSELUG00000006033	ncl	61	41.149	ENSAPEG00000013612	-	60	42.192	Amphiprion_percula
ENSELUG00000006033	ncl	63	74.118	ENSAPEG00000002769	ncl	59	74.588	Amphiprion_percula
ENSELUG00000006033	ncl	71	75.375	ENSATEG00000013343	ncl	71	73.800	Anabas_testudineus
ENSELUG00000006033	ncl	64	42.605	ENSATEG00000019862	-	80	43.846	Anabas_testudineus
ENSELUG00000006033	ncl	66	53.878	ENSAPLG00000012897	-	63	58.839	Anas_platyrhynchos
ENSELUG00000006033	ncl	83	51.858	ENSACAG00000001006	-	52	60.519	Anolis_carolinensis
ENSELUG00000006033	ncl	51	67.018	ENSACLG00000026031	ncl	83	68.065	Astatotilapia_calliptera
ENSELUG00000006033	ncl	54	65.591	ENSAMXG00000001647	ncl	84	66.447	Astyanax_mexicanus
ENSELUG00000006033	ncl	58	74.212	ENSCSEG00000015089	ncl	88	61.786	Cynoglossus_semilaevis
ENSELUG00000006033	ncl	56	72.533	ENSCVAG00000012600	ncl	61	71.765	Cyprinodon_variegatus
ENSELUG00000006033	ncl	52	70.833	ENSDARG00000002710	ncl	80	70.607	Danio_rerio
ENSELUG00000006033	ncl	55	43.947	ENSDNOG00000031611	-	60	44.092	Dasypus_novemcinctus
ENSELUG00000006033	ncl	58	41.299	ENSDNOG00000040257	-	64	44.473	Dasypus_novemcinctus
ENSELUG00000006033	ncl	80	45.322	ENSEBUG00000016173	ncl	55	45.521	Eptatretus_burgeri
ENSELUG00000006033	ncl	77	58.530	ENSFALG00000007592	-	54	57.743	Ficedula_albicollis
ENSELUG00000006033	ncl	56	71.958	ENSFHEG00000018000	ncl	65	72.235	Fundulus_heteroclitus
ENSELUG00000006033	ncl	57	68.557	ENSGMOG00000001341	ncl	66	66.589	Gadus_morhua
ENSELUG00000006033	ncl	50	33.206	ENSGALG00000032930	NCL	50	33.206	Gallus_gallus
ENSELUG00000006033	ncl	64	66.292	ENSGAFG00000015375	ncl	57	73.882	Gambusia_affinis
ENSELUG00000006033	ncl	90	62.378	ENSGACG00000008970	ncl	63	68.265	Gasterosteus_aculeatus
ENSELUG00000006033	ncl	89	51.097	ENSGAGG00000013330	-	56	60.892	Gopherus_agassizii
ENSELUG00000006033	ncl	56	70.745	ENSHBUG00000006869	ncl	60	70.423	Haplochromis_burtoni
ENSELUG00000006033	ncl	59	71.788	ENSHCOG00000010234	ncl	60	72.390	Hippocampus_comes
ENSELUG00000006033	ncl	52	68.269	ENSIPUG00000024556	ncl	81	68.421	Ictalurus_punctatus
ENSELUG00000006033	ncl	63	74.057	ENSKMAG00000008111	ncl	59	72.877	Kryptolebias_marmoratus
ENSELUG00000006033	ncl	63	74.764	ENSLBEG00000019073	ncl	62	74.057	Labrus_bergylta
ENSELUG00000006033	ncl	54	44.241	ENSLBEG00000014278	-	82	43.360	Labrus_bergylta
ENSELUG00000006033	ncl	57	45.137	ENSLBEG00000007915	-	65	44.330	Labrus_bergylta
ENSELUG00000006033	ncl	68	57.589	ENSLACG00000009328	ncl	64	61.098	Latimeria_chalumnae
ENSELUG00000006033	ncl	64	49.497	ENSLACG00000022167	-	76	52.603	Latimeria_chalumnae
ENSELUG00000006033	ncl	69	65.612	ENSLOCG00000004828	ncl	70	63.636	Lepisosteus_oculatus
ENSELUG00000006033	ncl	64	39.381	ENSMAMG00000003479	-	69	40.000	Mastacembelus_armatus
ENSELUG00000006033	ncl	69	71.183	ENSMAMG00000002086	ncl	60	71.315	Mastacembelus_armatus
ENSELUG00000006033	ncl	60	68.734	ENSMZEG00005017438	ncl	60	71.059	Maylandia_zebra
ENSELUG00000006033	ncl	52	62.996	ENSMGAG00000008147	-	85	58.649	Meleagris_gallopavo
ENSELUG00000006033	ncl	51	72.632	ENSMMOG00000008553	ncl	82	72.903	Mola_mola
ENSELUG00000006033	ncl	94	62.384	ENSMALG00000014827	ncl	62	75.810	Monopterus_albus
ENSELUG00000006033	ncl	51	71.154	ENSNBRG00000000146	-	83	71.930	Neolamprologus_brichardi
ENSELUG00000006033	ncl	51	71.154	ENSNBRG00000001232	ncl	79	71.930	Neolamprologus_brichardi
ENSELUG00000006033	ncl	56	56.545	ENSMEUG00000012335	-	54	56.842	Notamacropus_eugenii
ENSELUG00000006033	ncl	56	37.203	ENSONIG00000010631	-	97	37.270	Oreochromis_niloticus
ENSELUG00000006033	ncl	56	55.469	ENSOANG00000008732	-	60	55.584	Ornithorhynchus_anatinus
ENSELUG00000006033	ncl	60	36.829	ENSORLG00000004645	-	78	39.011	Oryzias_latipes
ENSELUG00000006033	ncl	54	75.616	ENSORLG00000007055	ncl	57	73.882	Oryzias_latipes
ENSELUG00000006033	ncl	51	45.652	ENSORLG00020003497	-	70	39.835	Oryzias_latipes_hni
ENSELUG00000006033	ncl	56	75.661	ENSORLG00020017943	ncl	57	74.118	Oryzias_latipes_hni
ENSELUG00000006033	ncl	51	45.652	ENSORLG00015006613	-	73	40.110	Oryzias_latipes_hsok
ENSELUG00000006033	ncl	56	73.280	ENSORLG00015013815	ncl	87	74.839	Oryzias_latipes_hsok
ENSELUG00000006033	ncl	61	73.902	ENSOMEG00000020786	ncl	57	74.353	Oryzias_melastigma
ENSELUG00000006033	ncl	59	37.713	ENSOMEG00000015864	-	82	37.275	Oryzias_melastigma
ENSELUG00000006033	ncl	64	75.117	ENSPKIG00000002604	ncl	71	70.495	Paramormyrops_kingsleyae
ENSELUG00000006033	ncl	51	71.678	ENSPMGG00000004709	ncl	83	72.026	Periophthalmus_magnuspinnatus
ENSELUG00000006033	ncl	61	71.951	ENSPFOG00000024205	ncl	57	73.412	Poecilia_formosa
ENSELUG00000006033	ncl	56	74.074	ENSPLAG00000024026	ncl	57	73.176	Poecilia_latipinna
ENSELUG00000006033	ncl	56	73.810	ENSPMEG00000006000	ncl	57	73.176	Poecilia_mexicana
ENSELUG00000006033	ncl	61	69.100	ENSPNYG00000020494	ncl	60	70.188	Pundamilia_nyererei
ENSELUG00000006033	ncl	55	52.255	ENSSHAG00000002702	-	59	52.073	Sarcophilus_harrisii
ENSELUG00000006033	ncl	67	72.667	ENSSFOG00015008583	ncl	68	77.574	Scleropages_formosus
ENSELUG00000006033	ncl	53	42.382	ENSSFOG00015013153	-	78	44.304	Scleropages_formosus
ENSELUG00000006033	ncl	63	73.536	ENSSMAG00000021241	ncl	60	73.068	Scophthalmus_maximus
ENSELUG00000006033	ncl	76	38.278	ENSSMAG00000007582	-	61	44.010	Scophthalmus_maximus
ENSELUG00000006033	ncl	69	41.996	ENSSDUG00000010922	-	71	44.784	Seriola_dumerili
ENSELUG00000006033	ncl	63	76.526	ENSSDUG00000006128	ncl	86	75.726	Seriola_dumerili
ENSELUG00000006033	ncl	64	76.168	ENSSLDG00000002012	ncl	60	74.824	Seriola_lalandi_dorsalis
ENSELUG00000006033	ncl	61	44.444	ENSSLDG00000015784	-	65	44.444	Seriola_lalandi_dorsalis
ENSELUG00000006033	ncl	56	58.718	ENSSPUG00000008244	-	58	58.594	Sphenodon_punctatus
ENSELUG00000006033	ncl	51	74.231	ENSSPAG00000002637	ncl	79	74.386	Stegastes_partitus
ENSELUG00000006033	ncl	61	42.381	ENSSPAG00000001859	-	61	42.895	Stegastes_partitus
ENSELUG00000006033	ncl	56	58.333	ENSTGUG00000009782	-	60	58.073	Taeniopygia_guttata
ENSELUG00000006033	ncl	63	73.709	ENSTRUG00000008185	ncl	63	72.139	Takifugu_rubripes
ENSELUG00000006033	ncl	58	73.333	ENSTNIG00000012186	ncl	93	62.887	Tetraodon_nigroviridis
ENSELUG00000006033	ncl	56	60.789	ENSXETG00000009517	ncl	54	60.526	Xenopus_tropicalis
ENSELUG00000006033	ncl	59	47.975	ENSXCOG00000003524	ncl	88	59.103	Xiphophorus_couchianus
ENSELUG00000006033	ncl	56	41.146	ENSXCOG00000007369	-	90	40.625	Xiphophorus_couchianus
ENSELUG00000006033	ncl	51	32.932	ENSXMAG00000005914	ncl	58	73.039	Xiphophorus_maculatus