EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000006148 (Gene tree)
Gene ID: 105028567
Gene Symbol: rbm47
Alias: si:ch211-241e15.2|wu:fj94a03
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 45559 bases
Position: chrLG25:18868285-18913843
Accession: 105028567
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000029229	RRM_1	PF00076.22	4.2e-39	1	3
ENSELUP00000029229	RRM_1	PF00076.22	4.2e-39	2	3
ENSELUP00000029229	RRM_1	PF00076.22	4.2e-39	3	3
ENSELUP00000005073	RRM_1	PF00076.22	6.9e-39	1	3
ENSELUP00000005073	RRM_1	PF00076.22	6.9e-39	2	3
ENSELUP00000005073	RRM_1	PF00076.22	6.9e-39	3	3
ENSELUP00000005077	RRM_1	PF00076.22	7.3e-39	1	3
ENSELUP00000005077	RRM_1	PF00076.22	7.3e-39	2	3
ENSELUP00000005077	RRM_1	PF00076.22	7.3e-39	3	3
ENSELUP00000029245	RRM_1	PF00076.22	7.3e-39	1	3
ENSELUP00000029245	RRM_1	PF00076.22	7.3e-39	2	3
ENSELUP00000029245	RRM_1	PF00076.22	7.3e-39	3	3
ENSELUP00000029255	RRM_1	PF00076.22	7.3e-39	1	3
ENSELUP00000029255	RRM_1	PF00076.22	7.3e-39	2	3
ENSELUP00000029255	RRM_1	PF00076.22	7.3e-39	3	3
ENSELUP00000029269	RRM_1	PF00076.22	7.3e-39	1	3
ENSELUP00000029269	RRM_1	PF00076.22	7.3e-39	2	3
ENSELUP00000029269	RRM_1	PF00076.22	7.3e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000011265	-	7041	XM_010901399	ENSELUP00000005077	617 (aa)	XP_010899701	UPI00057664EC
ENSELUT00000011351	-	6762	XM_010901412	ENSELUP00000029229	538 (aa)	XP_010899714	UPI000576C566
ENSELUT00000011277	-	7017	XM_010901409	ENSELUP00000005073	609 (aa)	XP_010899711	UPI0005766545
ENSELUT00000011331	-	6970	XM_010901398	ENSELUP00000029245	617 (aa)	XP_010899700	UPI00057664EC
ENSELUT00000011306	-	6999	XM_020043718	ENSELUP00000029269	617 (aa)	XP_019899277	UPI00057664EC
ENSELUT00000011294	-	6756	XM_010901402	ENSELUP00000029255	617 (aa)	XP_010899704	UPI00057664EC

Gene Model

Click here to download ENSELUG00000006148's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000006148's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000006148	rbm47	55	51.827	ENSELUG00000016493	syncrip	65	45.564
ENSELUG00000006148	rbm47	55	66.890	ENSELUG00000008166	rbm46	78	68.562
ENSELUG00000006148	rbm47	50	52.597	ENSELUG00000006441	hnrnpr	69	44.037
ENSELUG00000006148	rbm47	55	53.488	ENSELUG00000013519	syncripl	77	44.931
ENSELUG00000006148	rbm47	57	53.398	ENSELUG00000014625	HNRNPR	63	47.044
ENSELUG00000006148	rbm47	63	66.276	ENSELUG00000003159	a1cf	75	59.111

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000006148	rbm47	93	85.237	ENSG00000163694	RBM47	99	84.259	Homo_sapiens
ENSELUG00000006148	rbm47	100	90.127	ENSAPOG00000011062	rbm47	100	90.127	Acanthochromis_polyacanthus
ENSELUG00000006148	rbm47	93	85.237	ENSAMEG00000009672	RBM47	99	73.632	Ailuropoda_melanoleuca
ENSELUG00000006148	rbm47	100	86.650	ENSACIG00000011531	rbm47	100	81.037	Amphilophus_citrinellus
ENSELUG00000006148	rbm47	100	89.873	ENSAOCG00000022245	rbm47	100	89.873	Amphiprion_ocellaris
ENSELUG00000006148	rbm47	100	89.873	ENSAPEG00000018304	rbm47	100	89.873	Amphiprion_percula
ENSELUG00000006148	rbm47	100	89.340	ENSATEG00000018400	rbm47	100	89.141	Anabas_testudineus
ENSELUG00000006148	rbm47	100	82.828	ENSAPLG00000013974	RBM47	100	74.434	Anas_platyrhynchos
ENSELUG00000006148	rbm47	100	78.841	ENSACAG00000011833	RBM47	100	71.222	Anolis_carolinensis
ENSELUG00000006148	rbm47	97	81.530	ENSANAG00000029440	RBM47	99	82.493	Aotus_nancymaae
ENSELUG00000006148	rbm47	100	88.579	ENSACLG00000016902	rbm47	100	88.579	Astatotilapia_calliptera
ENSELUG00000006148	rbm47	100	84.848	ENSAMXG00000021794	rbm47	100	78.502	Astyanax_mexicanus
ENSELUG00000006148	rbm47	97	81.794	ENSBTAG00000002356	RBM47	99	75.879	Bos_taurus
ENSELUG00000006148	rbm47	93	84.958	ENSCJAG00000019385	RBM47	100	80.506	Callithrix_jacchus
ENSELUG00000006148	rbm47	93	84.358	ENSCAFG00000015898	RBM47	100	73.052	Canis_familiaris
ENSELUG00000006148	rbm47	78	84.358	ENSCAFG00020010558	RBM47	94	79.494	Canis_lupus_dingo
ENSELUG00000006148	rbm47	97	81.794	ENSCHIG00000026214	RBM47	99	75.879	Capra_hircus
ENSELUG00000006148	rbm47	84	88.584	ENSTSYG00000033612	RBM47	93	88.584	Carlito_syrichta
ENSELUG00000006148	rbm47	100	72.980	ENSCAPG00000008426	RBM47	100	73.096	Cavia_aperea
ENSELUG00000006148	rbm47	100	80.353	ENSCPOG00000014100	RBM47	100	81.266	Cavia_porcellus
ENSELUG00000006148	rbm47	97	82.586	ENSCCAG00000030129	-	99	82.759	Cebus_capucinus
ENSELUG00000006148	rbm47	99	53.171	ENSCCAG00000024397	-	99	52.195	Cebus_capucinus
ENSELUG00000006148	rbm47	93	85.237	ENSCATG00000042064	RBM47	99	82.759	Cercocebus_atys
ENSELUG00000006148	rbm47	94	85.515	ENSCLAG00000001684	RBM47	99	83.289	Chinchilla_lanigera
ENSELUG00000006148	rbm47	93	85.237	ENSCSAG00000017060	RBM47	99	74.709	Chlorocebus_sabaeus
ENSELUG00000006148	rbm47	83	77.570	ENSCHOG00000011731	RBM47	88	74.893	Choloepus_hoffmanni
ENSELUG00000006148	rbm47	100	82.368	ENSCPBG00000013831	RBM47	100	74.516	Chrysemys_picta_bellii
ENSELUG00000006148	rbm47	93	85.237	ENSCANG00000019997	RBM47	99	82.759	Colobus_angolensis_palliatus
ENSELUG00000006148	rbm47	100	69.780	ENSCGRG00001020102	-	100	76.322	Cricetulus_griseus_chok1gshd
ENSELUG00000006148	rbm47	100	79.899	ENSCGRG00001000623	-	100	80.808	Cricetulus_griseus_chok1gshd
ENSELUG00000006148	rbm47	100	78.660	ENSCGRG00000007762	-	100	76.000	Cricetulus_griseus_crigri
ENSELUG00000006148	rbm47	100	69.597	ENSCGRG00000014760	-	100	76.071	Cricetulus_griseus_crigri
ENSELUG00000006148	rbm47	93	89.722	ENSCSEG00000004545	rbm47	100	78.282	Cynoglossus_semilaevis
ENSELUG00000006148	rbm47	100	86.935	ENSCVAG00000020144	rbm47	100	87.848	Cyprinodon_variegatus
ENSELUG00000006148	rbm47	100	84.788	ENSDARG00000061985	rbm47	100	79.902	Danio_rerio
ENSELUG00000006148	rbm47	93	85.515	ENSDNOG00000046854	RBM47	100	74.632	Dasypus_novemcinctus
ENSELUG00000006148	rbm47	100	80.905	ENSDORG00000010144	Rbm47	100	74.677	Dipodomys_ordii
ENSELUG00000006148	rbm47	93	84.254	ENSETEG00000009194	RBM47	99	75.926	Echinops_telfairi
ENSELUG00000006148	rbm47	91	74.286	ENSEBUG00000011912	rbm47	86	62.835	Eptatretus_burgeri
ENSELUG00000006148	rbm47	93	85.237	ENSEASG00005008443	RBM47	99	75.879	Equus_asinus_asinus
ENSELUG00000006148	rbm47	93	85.237	ENSECAG00000004400	RBM47	99	75.879	Equus_caballus
ENSELUG00000006148	rbm47	69	88.995	ENSEEUG00000001194	RBM47	75	80.162	Erinaceus_europaeus
ENSELUG00000006148	rbm47	93	85.237	ENSFCAG00000012399	RBM47	99	76.342	Felis_catus
ENSELUG00000006148	rbm47	100	81.864	ENSFALG00000002861	RBM47	100	75.121	Ficedula_albicollis
ENSELUG00000006148	rbm47	100	79.597	ENSFDAG00000016326	RBM47	100	79.747	Fukomys_damarensis
ENSELUG00000006148	rbm47	100	86.835	ENSFHEG00000007938	rbm47	100	79.902	Fundulus_heteroclitus
ENSELUG00000006148	rbm47	100	88.750	ENSGMOG00000014802	rbm47	100	82.315	Gadus_morhua
ENSELUG00000006148	rbm47	73	82.323	ENSGALG00000014267	RBM47	100	82.368	Gallus_gallus
ENSELUG00000006148	rbm47	73	86.041	ENSGAFG00000020571	rbm47	98	86.076	Gambusia_affinis
ENSELUG00000006148	rbm47	100	88.413	ENSGACG00000016223	rbm47	100	88.608	Gasterosteus_aculeatus
ENSELUG00000006148	rbm47	100	82.368	ENSGAGG00000020051	RBM47	100	74.516	Gopherus_agassizii
ENSELUG00000006148	rbm47	93	85.237	ENSGGOG00000001367	RBM47	99	82.759	Gorilla_gorilla
ENSELUG00000006148	rbm47	100	88.579	ENSHBUG00000003520	rbm47	100	88.579	Haplochromis_burtoni
ENSELUG00000006148	rbm47	100	60.734	ENSHGLG00000016914	RBM47	100	77.143	Heterocephalus_glaber_female
ENSELUG00000006148	rbm47	100	67.642	ENSHGLG00100003071	-	100	67.317	Heterocephalus_glaber_male
ENSELUG00000006148	rbm47	100	79.404	ENSHGLG00100014028	-	100	80.556	Heterocephalus_glaber_male
ENSELUG00000006148	rbm47	99	86.111	ENSHCOG00000002074	rbm47	99	87.817	Hippocampus_comes
ENSELUG00000006148	rbm47	100	84.848	ENSIPUG00000004743	rbm47	96	84.772	Ictalurus_punctatus
ENSELUG00000006148	rbm47	93	85.515	ENSSTOG00000004727	RBM47	100	80.506	Ictidomys_tridecemlineatus
ENSELUG00000006148	rbm47	93	86.351	ENSJJAG00000013823	Rbm47	100	73.344	Jaculus_jaculus
ENSELUG00000006148	rbm47	100	87.342	ENSKMAG00000000084	rbm47	100	87.595	Kryptolebias_marmoratus
ENSELUG00000006148	rbm47	100	87.817	ENSLBEG00000008436	rbm47	100	87.562	Labrus_bergylta
ENSELUG00000006148	rbm47	93	87.955	ENSLACG00000007196	RBM47	100	74.110	Latimeria_chalumnae
ENSELUG00000006148	rbm47	93	90.503	ENSLOCG00000012966	rbm47	95	79.630	Lepisosteus_oculatus
ENSELUG00000006148	rbm47	96	83.155	ENSLAFG00000011998	RBM47	99	75.839	Loxodonta_africana
ENSELUG00000006148	rbm47	93	85.237	ENSMFAG00000037967	RBM47	99	82.759	Macaca_fascicularis
ENSELUG00000006148	rbm47	93	85.237	ENSMMUG00000012036	RBM47	99	82.292	Macaca_mulatta
ENSELUG00000006148	rbm47	93	84.958	ENSMNEG00000040774	RBM47	99	82.493	Macaca_nemestrina
ENSELUG00000006148	rbm47	94	87.415	ENSMLEG00000041432	RBM47	99	84.395	Mandrillus_leucophaeus
ENSELUG00000006148	rbm47	100	88.832	ENSMAMG00000019143	rbm47	100	88.832	Mastacembelus_armatus
ENSELUG00000006148	rbm47	100	88.579	ENSMZEG00005023659	rbm47	100	88.308	Maylandia_zebra
ENSELUG00000006148	rbm47	100	82.116	ENSMGAG00000012226	RBM47	100	73.997	Meleagris_gallopavo
ENSELUG00000006148	rbm47	100	79.699	ENSMAUG00000006493	Rbm47	100	80.605	Mesocricetus_auratus
ENSELUG00000006148	rbm47	93	83.193	ENSMICG00000026417	RBM47	99	82.162	Microcebus_murinus
ENSELUG00000006148	rbm47	100	79.899	ENSMOCG00000021170	Rbm47	100	80.808	Microtus_ochrogaster
ENSELUG00000006148	rbm47	100	89.141	ENSMMOG00000007260	rbm47	100	89.141	Mola_mola
ENSELUG00000006148	rbm47	93	79.521	ENSMODG00000020561	-	96	73.868	Monodelphis_domestica
ENSELUG00000006148	rbm47	100	82.368	ENSMODG00000007003	RBM47	100	75.689	Monodelphis_domestica
ENSELUG00000006148	rbm47	57	77.778	ENSMODG00000015426	-	98	77.778	Monodelphis_domestica
ENSELUG00000006148	rbm47	100	89.594	ENSMALG00000005167	rbm47	100	89.594	Monopterus_albus
ENSELUG00000006148	rbm47	100	79.597	MGP_CAROLIEiJ_G0027258	Rbm47	100	80.506	Mus_caroli
ENSELUG00000006148	rbm47	100	79.597	ENSMUSG00000070780	Rbm47	100	80.506	Mus_musculus
ENSELUG00000006148	rbm47	100	79.597	MGP_PahariEiJ_G0017040	Rbm47	100	80.506	Mus_pahari
ENSELUG00000006148	rbm47	100	79.597	MGP_SPRETEiJ_G0028253	Rbm47	100	80.506	Mus_spretus
ENSELUG00000006148	rbm47	93	85.237	ENSMPUG00000006177	RBM47	94	74.167	Mustela_putorius_furo
ENSELUG00000006148	rbm47	100	80.605	ENSMLUG00000000889	RBM47	100	73.779	Myotis_lucifugus
ENSELUG00000006148	rbm47	100	80.101	ENSNGAG00000003325	Rbm47	100	72.859	Nannospalax_galili
ENSELUG00000006148	rbm47	100	88.636	ENSNBRG00000015092	rbm47	100	81.159	Neolamprologus_brichardi
ENSELUG00000006148	rbm47	93	85.237	ENSNLEG00000017151	RBM47	99	82.759	Nomascus_leucogenys
ENSELUG00000006148	rbm47	66	87.955	ENSMEUG00000009516	-	99	80.374	Notamacropus_eugenii
ENSELUG00000006148	rbm47	86	84.836	ENSOPRG00000016507	-	75	84.836	Ochotona_princeps
ENSELUG00000006148	rbm47	93	85.515	ENSODEG00000004873	RBM47	100	73.701	Octodon_degus
ENSELUG00000006148	rbm47	100	87.879	ENSONIG00000009061	rbm47	100	87.879	Oreochromis_niloticus
ENSELUG00000006148	rbm47	100	75.980	ENSOANG00000008978	RBM47	100	75.450	Ornithorhynchus_anatinus
ENSELUG00000006148	rbm47	100	80.101	ENSOCUG00000012034	RBM47	100	74.959	Oryctolagus_cuniculus
ENSELUG00000006148	rbm47	100	87.563	ENSORLG00000005847	rbm47	100	87.563	Oryzias_latipes
ENSELUG00000006148	rbm47	100	87.563	ENSORLG00020005154	rbm47	100	87.563	Oryzias_latipes_hni
ENSELUG00000006148	rbm47	100	87.563	ENSORLG00015000066	rbm47	100	87.563	Oryzias_latipes_hsok
ENSELUG00000006148	rbm47	100	87.817	ENSOMEG00000010730	rbm47	100	80.945	Oryzias_melastigma
ENSELUG00000006148	rbm47	93	86.351	ENSOGAG00000029367	-	99	74.709	Otolemur_garnettii
ENSELUG00000006148	rbm47	93	79.387	ENSOGAG00000025193	-	99	69.966	Otolemur_garnettii
ENSELUG00000006148	rbm47	97	70.449	ENSOARG00000012711	RBM47	100	66.504	Ovis_aries
ENSELUG00000006148	rbm47	93	85.237	ENSPPAG00000029763	RBM47	95	82.759	Pan_paniscus
ENSELUG00000006148	rbm47	94	76.389	ENSPPRG00000012873	RBM47	99	83.024	Panthera_pardus
ENSELUG00000006148	rbm47	83	75.397	ENSPTIG00000017046	RBM47	100	74.405	Panthera_tigris_altaica
ENSELUG00000006148	rbm47	93	85.237	ENSPTRG00000016006	RBM47	99	82.759	Pan_troglodytes
ENSELUG00000006148	rbm47	93	85.237	ENSPANG00000005980	RBM47	99	82.759	Papio_anubis
ENSELUG00000006148	rbm47	93	88.643	ENSPKIG00000005037	rbm47	100	77.941	Paramormyrops_kingsleyae
ENSELUG00000006148	rbm47	97	80.151	ENSPKIG00000013431	RBM47	98	84.010	Paramormyrops_kingsleyae
ENSELUG00000006148	rbm47	88	82.116	ENSPSIG00000017516	RBM47	97	76.951	Pelodiscus_sinensis
ENSELUG00000006148	rbm47	93	91.341	ENSPMGG00000018540	rbm47	100	80.130	Periophthalmus_magnuspinnatus
ENSELUG00000006148	rbm47	100	79.345	ENSPEMG00000011088	Rbm47	100	80.253	Peromyscus_maniculatus_bairdii
ENSELUG00000006148	rbm47	100	85.891	ENSPFOG00000007997	rbm47	100	86.634	Poecilia_formosa
ENSELUG00000006148	rbm47	100	85.644	ENSPLAG00000002072	rbm47	100	86.386	Poecilia_latipinna
ENSELUG00000006148	rbm47	100	87.154	ENSPMEG00000017492	rbm47	100	87.909	Poecilia_mexicana
ENSELUG00000006148	rbm47	100	86.902	ENSPREG00000008456	rbm47	100	87.657	Poecilia_reticulata
ENSELUG00000006148	rbm47	93	75.691	ENSPPYG00000014688	RBM47	98	65.700	Pongo_abelii
ENSELUG00000006148	rbm47	86	80.469	ENSPCAG00000011879	RBM47	80	83.333	Procavia_capensis
ENSELUG00000006148	rbm47	93	84.637	ENSPCOG00000023451	RBM47	100	79.747	Propithecus_coquereli
ENSELUG00000006148	rbm47	93	86.072	ENSPVAG00000003812	RBM47	99	75.626	Pteropus_vampyrus
ENSELUG00000006148	rbm47	100	88.384	ENSPNYG00000022868	rbm47	100	80.899	Pundamilia_nyererei
ENSELUG00000006148	rbm47	100	85.354	ENSPNAG00000007940	rbm47	100	79.187	Pygocentrus_nattereri
ENSELUG00000006148	rbm47	100	79.849	ENSRNOG00000002408	Rbm47	100	73.096	Rattus_norvegicus
ENSELUG00000006148	rbm47	93	85.237	ENSRBIG00000039601	RBM47	99	82.759	Rhinopithecus_bieti
ENSELUG00000006148	rbm47	93	85.237	ENSRROG00000044696	RBM47	99	82.759	Rhinopithecus_roxellana
ENSELUG00000006148	rbm47	97	73.480	ENSSBOG00000028475	RBM47	96	82.804	Saimiri_boliviensis_boliviensis
ENSELUG00000006148	rbm47	100	81.864	ENSSHAG00000017576	RBM47	100	74.797	Sarcophilus_harrisii
ENSELUG00000006148	rbm47	100	77.541	ENSSFOG00015012445	rbm47	100	77.504	Scleropages_formosus
ENSELUG00000006148	rbm47	98	81.984	ENSSFOG00015024101	RBM47	100	76.744	Scleropages_formosus
ENSELUG00000006148	rbm47	100	87.310	ENSSMAG00000009744	rbm47	100	87.310	Scophthalmus_maximus
ENSELUG00000006148	rbm47	100	88.471	ENSSDUG00000022684	rbm47	100	82.581	Seriola_dumerili
ENSELUG00000006148	rbm47	100	88.471	ENSSLDG00000003109	rbm47	100	88.471	Seriola_lalandi_dorsalis
ENSELUG00000006148	rbm47	83	80.624	ENSSARG00000001735	RBM47	75	81.514	Sorex_araneus
ENSELUG00000006148	rbm47	100	80.353	ENSSPUG00000007515	RBM47	100	80.506	Sphenodon_punctatus
ENSELUG00000006148	rbm47	100	90.127	ENSSPAG00000001257	rbm47	100	90.127	Stegastes_partitus
ENSELUG00000006148	rbm47	93	85.237	ENSSSCG00000008796	RBM47	99	75.879	Sus_scrofa
ENSELUG00000006148	rbm47	100	81.360	ENSTGUG00000008705	RBM47	100	74.434	Taeniopygia_guttata
ENSELUG00000006148	rbm47	100	80.130	ENSTRUG00000014050	rbm47	100	78.339	Takifugu_rubripes
ENSELUG00000006148	rbm47	100	86.869	ENSTNIG00000006127	rbm47	100	80.945	Tetraodon_nigroviridis
ENSELUG00000006148	rbm47	81	83.754	ENSTBEG00000001607	RBM47	76	78.734	Tupaia_belangeri
ENSELUG00000006148	rbm47	93	85.515	ENSTTRG00000002839	RBM47	99	75.635	Tursiops_truncatus
ENSELUG00000006148	rbm47	93	85.237	ENSUAMG00000021346	RBM47	99	74.667	Ursus_americanus
ENSELUG00000006148	rbm47	51	84.800	ENSVPAG00000000641	-	56	77.931	Vicugna_pacos
ENSELUG00000006148	rbm47	93	84.916	ENSVVUG00000014774	RBM47	100	73.333	Vulpes_vulpes
ENSELUG00000006148	rbm47	100	81.864	ENSXETG00000012802	rbm47	93	83.551	Xenopus_tropicalis
ENSELUG00000006148	rbm47	100	80.586	ENSXCOG00000000780	rbm47	100	86.041	Xiphophorus_couchianus
ENSELUG00000006148	rbm47	100	87.406	ENSXMAG00000009874	rbm47	100	88.161	Xiphophorus_maculatus