EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000006550 (Gene tree)
Gene ID: 105010373
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 44522 bases
Position: chrLG20:16473740-16518261
Accession: 105010373
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000029570	tRNA-synt_1g	PF09334.11	1.6e-12	1	1
ENSELUP00000029570	Anticodon_1	PF08264.13	1.7e-34	1	1
ENSELUP00000029570	tRNA-synt_1	PF00133.22	2.2e-206	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000010515	-	4675	XM_013139450	ENSELUP00000029570	1311 (aa)	XP_012994904	UPI00057739C6

Gene Model

Click here to download ENSELUG00000006550's gene model file

Pathways

Pathway ID	Pathway Name	Source
els00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000006550's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000006550	vars	76	50.291	ENSELUG00000017824	vars2	92	50.639

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000006550	vars	97	64.225	ENSG00000204394	VARS	99	71.779	Homo_sapiens
ENSELUG00000006550	vars	93	84.490	ENSAPOG00000020921	vars	97	84.490	Acanthochromis_polyacanthus
ENSELUG00000006550	vars	93	84.490	ENSAPOG00000020691	vars	97	84.490	Acanthochromis_polyacanthus
ENSELUG00000006550	vars	97	64.280	ENSAMEG00000006417	VARS	100	64.330	Ailuropoda_melanoleuca
ENSELUG00000006550	vars	97	83.476	ENSACIG00000013752	vars	100	83.476	Amphilophus_citrinellus
ENSELUG00000006550	vars	98	84.580	ENSAOCG00000002447	vars	99	84.687	Amphiprion_ocellaris
ENSELUG00000006550	vars	98	84.657	ENSAPEG00000010638	vars	99	84.764	Amphiprion_percula
ENSELUG00000006550	vars	97	81.060	ENSATEG00000020219	vars	100	81.060	Anabas_testudineus
ENSELUG00000006550	vars	88	70.216	ENSACAG00000029133	-	99	69.905	Anolis_carolinensis
ENSELUG00000006550	vars	97	64.551	ENSANAG00000015453	VARS	100	64.474	Aotus_nancymaae
ENSELUG00000006550	vars	99	83.641	ENSACLG00000025699	vars	98	83.744	Astatotilapia_calliptera
ENSELUG00000006550	vars	92	80.862	ENSAMXG00000017716	vars	95	80.862	Astyanax_mexicanus
ENSELUG00000006550	vars	97	64.783	ENSBTAG00000005631	VARS	100	64.551	Bos_taurus
ENSELUG00000006550	vars	97	64.071	ENSCJAG00000002604	VARS	100	64.071	Callithrix_jacchus
ENSELUG00000006550	vars	97	63.917	ENSCAFG00000000636	VARS	100	63.840	Canis_familiaris
ENSELUG00000006550	vars	91	65.160	ENSCAFG00020020790	VARS	96	65.078	Canis_lupus_dingo
ENSELUG00000006550	vars	97	64.706	ENSCHIG00000011008	VARS	100	64.628	Capra_hircus
ENSELUG00000006550	vars	97	64.396	ENSTSYG00000001567	VARS	100	64.319	Carlito_syrichta
ENSELUG00000006550	vars	88	66.982	ENSCAPG00000013736	VARS	98	66.781	Cavia_aperea
ENSELUG00000006550	vars	97	63.805	ENSCPOG00000000870	VARS	100	63.629	Cavia_porcellus
ENSELUG00000006550	vars	97	64.231	ENSCCAG00000035656	VARS	100	64.615	Cebus_capucinus
ENSELUG00000006550	vars	97	64.181	ENSCATG00000022394	VARS	100	64.379	Cercocebus_atys
ENSELUG00000006550	vars	88	65.482	ENSCLAG00000009470	VARS	93	65.228	Chinchilla_lanigera
ENSELUG00000006550	vars	97	64.105	ENSCSAG00000008784	VARS	100	64.302	Chlorocebus_sabaeus
ENSELUG00000006550	vars	75	74.233	ENSCPBG00000007943	VARS	96	74.233	Chrysemys_picta_bellii
ENSELUG00000006550	vars	97	64.258	ENSCANG00000033570	VARS	100	64.456	Colobus_angolensis_palliatus
ENSELUG00000006550	vars	97	64.379	ENSCGRG00001005686	Vars	100	64.456	Cricetulus_griseus_chok1gshd
ENSELUG00000006550	vars	91	62.654	ENSCGRG00000013352	Vars	78	62.735	Cricetulus_griseus_crigri
ENSELUG00000006550	vars	97	79.859	ENSCSEG00000019652	vars	100	79.938	Cynoglossus_semilaevis
ENSELUG00000006550	vars	97	84.399	ENSCVAG00000022398	vars	100	84.555	Cyprinodon_variegatus
ENSELUG00000006550	vars	97	83.177	ENSDARG00000044575	vars	100	83.177	Danio_rerio
ENSELUG00000006550	vars	80	70.841	ENSDORG00000016433	Vars	93	70.937	Dipodomys_ordii
ENSELUG00000006550	vars	67	74.503	ENSETEG00000003824	VARS	77	74.503	Echinops_telfairi
ENSELUG00000006550	vars	56	64.658	ENSEBUG00000004637	vars	100	64.658	Eptatretus_burgeri
ENSELUG00000006550	vars	97	64.611	ENSEASG00005015673	VARS	100	64.534	Equus_asinus_asinus
ENSELUG00000006550	vars	97	64.688	ENSECAG00000014620	VARS	100	64.456	Equus_caballus
ENSELUG00000006550	vars	70	70.426	ENSEEUG00000004116	VARS	73	70.426	Erinaceus_europaeus
ENSELUG00000006550	vars	97	64.148	ENSFCAG00000004510	VARS	100	63.917	Felis_catus
ENSELUG00000006550	vars	81	69.852	ENSFDAG00000011401	VARS	100	69.655	Fukomys_damarensis
ENSELUG00000006550	vars	97	83.151	ENSFHEG00000010672	vars	100	83.463	Fundulus_heteroclitus
ENSELUG00000006550	vars	97	80.016	ENSGMOG00000014908	vars	100	80.233	Gadus_morhua
ENSELUG00000006550	vars	97	83.710	ENSGAFG00000021630	vars	100	83.463	Gambusia_affinis
ENSELUG00000006550	vars	93	91.667	ENSGACG00000009601	vars	100	81.235	Gasterosteus_aculeatus
ENSELUG00000006550	vars	97	64.105	ENSGGOG00000011364	VARS	100	64.302	Gorilla_gorilla
ENSELUG00000006550	vars	99	83.717	ENSHBUG00000017151	vars	98	83.821	Haplochromis_burtoni
ENSELUG00000006550	vars	97	64.241	ENSHGLG00000011646	VARS	100	64.009	Heterocephalus_glaber_female
ENSELUG00000006550	vars	91	61.261	ENSHGLG00100018062	VARS	99	61.016	Heterocephalus_glaber_male
ENSELUG00000006550	vars	97	80.781	ENSHCOG00000012198	vars	99	80.781	Hippocampus_comes
ENSELUG00000006550	vars	97	81.704	ENSIPUG00000005218	vars	100	81.470	Ictalurus_punctatus
ENSELUG00000006550	vars	97	64.765	ENSSTOG00000013112	VARS	100	64.919	Ictidomys_tridecemlineatus
ENSELUG00000006550	vars	97	52.377	ENSJJAG00000015343	-	100	51.869	Jaculus_jaculus
ENSELUG00000006550	vars	97	63.615	ENSJJAG00000019749	-	100	63.861	Jaculus_jaculus
ENSELUG00000006550	vars	97	80.625	ENSKMAG00000009455	vars	100	80.859	Kryptolebias_marmoratus
ENSELUG00000006550	vars	97	81.811	ENSLBEG00000010341	vars	99	81.963	Labrus_bergylta
ENSELUG00000006550	vars	92	65.661	ENSLACG00000015232	VARS	99	65.334	Latimeria_chalumnae
ENSELUG00000006550	vars	97	74.941	ENSLOCG00000004240	vars	100	74.297	Lepisosteus_oculatus
ENSELUG00000006550	vars	97	64.181	ENSLAFG00000023090	VARS	100	64.071	Loxodonta_africana
ENSELUG00000006550	vars	97	64.105	ENSMFAG00000001032	VARS	100	64.302	Macaca_fascicularis
ENSELUG00000006550	vars	97	64.105	ENSMMUG00000006828	VARS	100	64.302	Macaca_mulatta
ENSELUG00000006550	vars	97	64.105	ENSMNEG00000042072	VARS	100	64.302	Macaca_nemestrina
ENSELUG00000006550	vars	97	64.181	ENSMLEG00000039307	VARS	100	64.379	Mandrillus_leucophaeus
ENSELUG00000006550	vars	97	84.062	ENSMAMG00000003949	vars	100	84.309	Mastacembelus_armatus
ENSELUG00000006550	vars	99	83.744	ENSMZEG00005018327	vars	98	83.744	Maylandia_zebra
ENSELUG00000006550	vars	97	63.994	ENSMAUG00000006715	Vars	100	64.225	Mesocricetus_auratus
ENSELUG00000006550	vars	97	64.379	ENSMICG00000003548	VARS	100	64.302	Microcebus_murinus
ENSELUG00000006550	vars	97	63.390	ENSMOCG00000015404	Vars	100	63.390	Microtus_ochrogaster
ENSELUG00000006550	vars	97	80.781	ENSMMOG00000015801	vars	100	81.094	Mola_mola
ENSELUG00000006550	vars	97	64.462	ENSMODG00000015204	-	100	65.019	Monodelphis_domestica
ENSELUG00000006550	vars	97	84.062	ENSMALG00000022532	vars	99	84.062	Monopterus_albus
ENSELUG00000006550	vars	97	64.456	MGP_CAROLIEiJ_G0021491	Vars	100	64.302	Mus_caroli
ENSELUG00000006550	vars	97	64.534	ENSMUSG00000007029	Vars	100	64.379	Mus_musculus
ENSELUG00000006550	vars	97	64.456	MGP_PahariEiJ_G0020486	Vars	100	64.302	Mus_pahari
ENSELUG00000006550	vars	97	64.456	MGP_SPRETEiJ_G0022396	Vars	100	64.302	Mus_spretus
ENSELUG00000006550	vars	97	64.241	ENSMPUG00000010821	VARS	100	64.164	Mustela_putorius_furo
ENSELUG00000006550	vars	76	67.988	ENSMLUG00000013126	VARS	100	67.592	Myotis_lucifugus
ENSELUG00000006550	vars	97	64.164	ENSNGAG00000012151	Vars	100	64.706	Nannospalax_galili
ENSELUG00000006550	vars	97	83.748	ENSNBRG00000020520	vars	100	83.853	Neolamprologus_brichardi
ENSELUG00000006550	vars	97	64.253	ENSNLEG00000006351	VARS	100	64.225	Nomascus_leucogenys
ENSELUG00000006550	vars	91	71.543	ENSMEUG00000011378	VARS	95	71.759	Notamacropus_eugenii
ENSELUG00000006550	vars	97	64.938	ENSOPRG00000003607	VARS	100	64.938	Ochotona_princeps
ENSELUG00000006550	vars	97	64.087	ENSODEG00000017681	VARS	100	63.854	Octodon_degus
ENSELUG00000006550	vars	97	83.372	ENSONIG00000013064	vars	100	85.256	Oreochromis_niloticus
ENSELUG00000006550	vars	75	67.371	ENSOANG00000005400	VARS	98	67.020	Ornithorhynchus_anatinus
ENSELUG00000006550	vars	97	62.914	ENSOCUG00000022463	VARS	100	62.760	Oryctolagus_cuniculus
ENSELUG00000006550	vars	97	82.804	ENSORLG00000013063	vars	100	82.804	Oryzias_latipes
ENSELUG00000006550	vars	97	83.346	ENSORLG00020003504	vars	100	83.619	Oryzias_latipes_hni
ENSELUG00000006550	vars	97	83.580	ENSORLG00015009001	vars	100	83.645	Oryzias_latipes_hsok
ENSELUG00000006550	vars	97	83.450	ENSOMEG00000015016	vars	100	83.567	Oryzias_melastigma
ENSELUG00000006550	vars	97	63.840	ENSOGAG00000007515	VARS	100	63.685	Otolemur_garnettii
ENSELUG00000006550	vars	97	64.302	ENSPPAG00000034012	VARS	100	64.302	Pan_paniscus
ENSELUG00000006550	vars	97	64.302	ENSPPRG00000014855	VARS	100	64.071	Panthera_pardus
ENSELUG00000006550	vars	83	68.402	ENSPTIG00000010462	VARS	94	67.899	Panthera_tigris_altaica
ENSELUG00000006550	vars	97	64.225	ENSPTRG00000017985	VARS	100	64.225	Pan_troglodytes
ENSELUG00000006550	vars	97	62.643	ENSPANG00000014565	VARS	100	62.835	Papio_anubis
ENSELUG00000006550	vars	97	81.882	ENSPKIG00000016304	vars	100	81.882	Paramormyrops_kingsleyae
ENSELUG00000006550	vars	97	81.187	ENSPMGG00000023909	vars	100	81.265	Periophthalmus_magnuspinnatus
ENSELUG00000006550	vars	97	64.071	ENSPEMG00000006639	Vars	100	64.302	Peromyscus_maniculatus_bairdii
ENSELUG00000006550	vars	97	64.231	ENSPCIG00000018553	VARS	100	64.319	Phascolarctos_cinereus
ENSELUG00000006550	vars	97	83.619	ENSPFOG00000015690	vars	100	83.697	Poecilia_formosa
ENSELUG00000006550	vars	97	83.541	ENSPLAG00000009590	vars	100	83.619	Poecilia_latipinna
ENSELUG00000006550	vars	97	83.541	ENSPMEG00000004708	vars	100	83.619	Poecilia_mexicana
ENSELUG00000006550	vars	97	78.911	ENSPREG00000013264	vars	100	78.911	Poecilia_reticulata
ENSELUG00000006550	vars	97	62.837	ENSPPYG00000016460	VARS	100	62.837	Pongo_abelii
ENSELUG00000006550	vars	84	65.542	ENSPCAG00000013565	VARS	86	65.542	Procavia_capensis
ENSELUG00000006550	vars	97	64.148	ENSPCOG00000010942	VARS	100	63.763	Propithecus_coquereli
ENSELUG00000006550	vars	97	62.298	ENSPVAG00000012403	VARS	100	62.066	Pteropus_vampyrus
ENSELUG00000006550	vars	97	84.059	ENSPNYG00000022511	vars	100	84.165	Pundamilia_nyererei
ENSELUG00000006550	vars	97	83.268	ENSPNAG00000020962	vars	100	83.268	Pygocentrus_nattereri
ENSELUG00000006550	vars	97	64.379	ENSRNOG00000000867	Vars	100	64.456	Rattus_norvegicus
ENSELUG00000006550	vars	97	64.181	ENSRBIG00000041669	VARS	100	64.379	Rhinopithecus_bieti
ENSELUG00000006550	vars	97	64.181	ENSRROG00000045490	VARS	100	64.379	Rhinopithecus_roxellana
ENSELUG00000006550	vars	97	64.164	ENSSBOG00000035402	VARS	100	64.164	Saimiri_boliviensis_boliviensis
ENSELUG00000006550	vars	97	63.331	ENSSHAG00000006937	VARS	100	63.917	Sarcophilus_harrisii
ENSELUG00000006550	vars	93	85.061	ENSSFOG00015014272	vars	98	85.061	Scleropages_formosus
ENSELUG00000006550	vars	97	82.982	ENSSMAG00000009596	vars	99	82.866	Scophthalmus_maximus
ENSELUG00000006550	vars	97	85.558	ENSSDUG00000014177	vars	100	85.558	Seriola_dumerili
ENSELUG00000006550	vars	97	85.714	ENSSLDG00000025316	vars	100	85.714	Seriola_lalandi_dorsalis
ENSELUG00000006550	vars	97	85.012	ENSSPAG00000017068	vars	100	84.813	Stegastes_partitus
ENSELUG00000006550	vars	97	64.474	ENSSSCG00000038950	VARS	100	64.241	Sus_scrofa
ENSELUG00000006550	vars	79	78.420	ENSTRUG00000012307	vars	96	78.173	Takifugu_rubripes
ENSELUG00000006550	vars	97	81.606	ENSTNIG00000008011	vars	100	81.528	Tetraodon_nigroviridis
ENSELUG00000006550	vars	97	58.901	ENSTTRG00000014128	VARS	100	58.437	Tursiops_truncatus
ENSELUG00000006550	vars	97	62.789	ENSUAMG00000010424	VARS	100	62.789	Ursus_americanus
ENSELUG00000006550	vars	97	59.537	ENSUMAG00000013486	VARS	100	59.568	Ursus_maritimus
ENSELUG00000006550	vars	97	64.071	ENSVVUG00000021323	VARS	100	63.840	Vulpes_vulpes
ENSELUG00000006550	vars	97	62.886	ENSXETG00000024076	vars	100	63.040	Xenopus_tropicalis
ENSELUG00000006550	vars	97	81.435	ENSXCOG00000019172	vars	100	81.669	Xiphophorus_couchianus
ENSELUG00000006550	vars	97	83.476	ENSXMAG00000010927	vars	100	83.307	Xiphophorus_maculatus