EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000006651 (Gene tree)
Gene ID: 105023912
Gene Symbol: srrt
Alias: CHUNP6881|ars2|zgc:92060
Full Name: serrate%2C RNA effector molecule
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 12786 bases
Position: chrLG07:17886839-17899624
Accession: 105023912
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000005653	ARS2	PF04959.13	4.5e-92	1	1
ENSELUP00000029642	ARS2	PF04959.13	4.8e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000010297	-	3000	XM_010893451	ENSELUP00000005653	912 (aa)	XP_010891753	UPI000577DE15
ENSELUT00000010328	-	3338	-	ENSELUP00000029642	938 (aa)	-	-

Gene Model

Click here to download ENSELUG00000006651's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000006651's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000006651	srrt	92	58.960	ENSELUG00000021216	-	96	59.127

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000006651	srrt	50	76.407	ENSG00000087087	SRRT	98	87.097	Homo_sapiens
ENSELUG00000006651	srrt	96	65.385	ENSAMEG00000014506	SRRT	95	66.363	Ailuropoda_melanoleuca
ENSELUG00000006651	srrt	82	83.333	ENSACIG00000015795	srrt	89	84.382	Amphilophus_citrinellus
ENSELUG00000006651	srrt	52	66.876	ENSAOCG00000009189	-	52	68.750	Amphiprion_ocellaris
ENSELUG00000006651	srrt	78	85.249	ENSAOCG00000009693	srrt	96	76.897	Amphiprion_ocellaris
ENSELUG00000006651	srrt	90	56.308	ENSAPEG00000020016	-	52	68.750	Amphiprion_percula
ENSELUG00000006651	srrt	81	84.599	ENSAPEG00000003646	srrt	91	84.165	Amphiprion_percula
ENSELUG00000006651	srrt	60	59.532	ENSATEG00000003652	-	86	66.454	Anabas_testudineus
ENSELUG00000006651	srrt	81	83.913	ENSATEG00000014425	srrt	88	83.913	Anabas_testudineus
ENSELUG00000006651	srrt	51	75.862	ENSACAG00000001014	SRRT	96	65.297	Anolis_carolinensis
ENSELUG00000006651	srrt	65	43.981	WBGene00017085	E01A2.2	85	41.856	Caenorhabditis_elegans
ENSELUG00000006651	srrt	84	74.439	ENSCAFG00020013358	SRRT	95	64.960	Canis_lupus_dingo
ENSELUG00000006651	srrt	50	70.711	ENSCAPG00000013586	SRRT	100	65.212	Cavia_aperea
ENSELUG00000006651	srrt	50	71.338	ENSCLAG00000007568	SRRT	95	64.892	Chinchilla_lanigera
ENSELUG00000006651	srrt	67	75.000	ENSCPBG00000011553	SRRT	81	71.600	Chrysemys_picta_bellii
ENSELUG00000006651	srrt	100	40.947	ENSCSAVG00000008394	-	89	56.125	Ciona_savignyi
ENSELUG00000006651	srrt	50	71.125	ENSCGRG00000007292	Srrt	89	70.276	Cricetulus_griseus_crigri
ENSELUG00000006651	srrt	50	74.026	ENSCSEG00000017878	srrt	95	66.818	Cynoglossus_semilaevis
ENSELUG00000006651	srrt	72	65.272	ENSCSEG00000005233	-	85	67.024	Cynoglossus_semilaevis
ENSELUG00000006651	srrt	89	77.800	ENSCVAG00000019848	srrt	96	74.253	Cyprinodon_variegatus
ENSELUG00000006651	srrt	90	54.964	ENSCVAG00000017344	-	95	55.322	Cyprinodon_variegatus
ENSELUG00000006651	srrt	95	79.086	ENSDARG00000017762	srrt	95	78.809	Danio_rerio
ENSELUG00000006651	srrt	96	64.068	ENSDORG00000005584	Srrt	89	71.398	Dipodomys_ordii
ENSELUG00000006651	srrt	83	50.701	FBgn0033062	Ars2	69	51.812	Drosophila_melanogaster
ENSELUG00000006651	srrt	65	62.203	ENSEBUG00000008517	-	82	60.254	Eptatretus_burgeri
ENSELUG00000006651	srrt	80	76.842	ENSEEUG00000009117	SRRT	81	76.842	Erinaceus_europaeus
ENSELUG00000006651	srrt	50	68.132	ENSFDAG00000021347	SRRT	95	63.616	Fukomys_damarensis
ENSELUG00000006651	srrt	52	58.811	ENSFHEG00000004105	-	94	59.034	Fundulus_heteroclitus
ENSELUG00000006651	srrt	73	86.585	ENSFHEG00000002756	srrt	89	86.694	Fundulus_heteroclitus
ENSELUG00000006651	srrt	62	70.000	ENSGMOG00000018694	-	76	70.000	Gadus_morhua
ENSELUG00000006651	srrt	50	75.274	ENSGMOG00000018619	srrt	95	69.690	Gadus_morhua
ENSELUG00000006651	srrt	52	64.092	ENSGACG00000001100	-	52	65.665	Gasterosteus_aculeatus
ENSELUG00000006651	srrt	95	73.029	ENSGACG00000020387	srrt	95	74.083	Gasterosteus_aculeatus
ENSELUG00000006651	srrt	96	64.660	ENSHGLG00000008344	Srrt	89	70.488	Heterocephalus_glaber_female
ENSELUG00000006651	srrt	96	65.095	ENSHGLG00100018857	Srrt	89	71.828	Heterocephalus_glaber_male
ENSELUG00000006651	srrt	98	71.348	ENSHCOG00000005403	srrt	96	72.350	Hippocampus_comes
ENSELUG00000006651	srrt	92	54.083	ENSHCOG00000008904	-	91	64.270	Hippocampus_comes
ENSELUG00000006651	srrt	92	75.972	ENSIPUG00000021150	srrt	96	74.771	Ictalurus_punctatus
ENSELUG00000006651	srrt	95	65.865	ENSJJAG00000010446	Srrt	96	64.948	Jaculus_jaculus
ENSELUG00000006651	srrt	95	72.664	ENSKMAG00000013599	srrt	96	73.823	Kryptolebias_marmoratus
ENSELUG00000006651	srrt	84	82.546	ENSLBEG00000016308	srrt	87	83.333	Labrus_bergylta
ENSELUG00000006651	srrt	76	77.119	ENSLACG00000001089	SRRT	94	64.387	Latimeria_chalumnae
ENSELUG00000006651	srrt	90	64.769	ENSLOCG00000013658	srrt	100	66.786	Lepisosteus_oculatus
ENSELUG00000006651	srrt	96	64.246	ENSLAFG00000007725	SRRT	95	64.739	Loxodonta_africana
ENSELUG00000006651	srrt	52	68.553	ENSMAMG00000010681	-	53	69.165	Mastacembelus_armatus
ENSELUG00000006651	srrt	50	71.215	ENSMAUG00000011386	Srrt	96	64.480	Mesocricetus_auratus
ENSELUG00000006651	srrt	50	71.855	ENSMOCG00000001971	Srrt	95	65.158	Microtus_ochrogaster
ENSELUG00000006651	srrt	95	72.465	ENSMMOG00000016399	srrt	88	82.174	Mola_mola
ENSELUG00000006651	srrt	50	71.610	ENSMODG00000004862	SRRT	89	72.246	Monodelphis_domestica
ENSELUG00000006651	srrt	87	69.887	ENSMALG00000018604	srrt	99	68.786	Monopterus_albus
ENSELUG00000006651	srrt	58	47.761	ENSMALG00000005567	-	84	52.288	Monopterus_albus
ENSELUG00000006651	srrt	50	71.215	MGP_CAROLIEiJ_G0027870	Srrt	99	74.444	Mus_caroli
ENSELUG00000006651	srrt	50	72.068	ENSMUSG00000037364	Srrt	99	74.444	Mus_musculus
ENSELUG00000006651	srrt	50	72.281	MGP_PahariEiJ_G0024456	Srrt	99	74.444	Mus_pahari
ENSELUG00000006651	srrt	50	72.068	MGP_SPRETEiJ_G0028875	Srrt	99	74.444	Mus_spretus
ENSELUG00000006651	srrt	50	83.772	ENSNBRG00000019100	srrt	95	73.963	Neolamprologus_brichardi
ENSELUG00000006651	srrt	81	64.847	ENSNLEG00000011987	SRRT	98	62.851	Nomascus_leucogenys
ENSELUG00000006651	srrt	96	53.604	ENSMEUG00000011941	SRRT	52	61.456	Notamacropus_eugenii
ENSELUG00000006651	srrt	59	75.000	ENSOPRG00000002502	-	67	78.788	Ochotona_princeps
ENSELUG00000006651	srrt	50	72.258	ENSODEG00000016856	SRRT	89	71.398	Octodon_degus
ENSELUG00000006651	srrt	50	84.279	ENSONIG00000004242	srrt	96	72.788	Oreochromis_niloticus
ENSELUG00000006651	srrt	96	71.950	ENSORLG00000008120	srrt	96	73.648	Oryzias_latipes
ENSELUG00000006651	srrt	96	71.868	ENSORLG00020003058	srrt	96	73.533	Oryzias_latipes_hni
ENSELUG00000006651	srrt	96	71.982	ENSORLG00015008062	srrt	96	73.648	Oryzias_latipes_hsok
ENSELUG00000006651	srrt	96	72.292	ENSOMEG00000003155	srrt	91	83.913	Oryzias_melastigma
ENSELUG00000006651	srrt	92	57.326	ENSOMEG00000006963	-	95	58.514	Oryzias_melastigma
ENSELUG00000006651	srrt	94	71.031	ENSPKIG00000022212	-	96	72.603	Paramormyrops_kingsleyae
ENSELUG00000006651	srrt	95	71.900	ENSPKIG00000005434	srrt	95	78.057	Paramormyrops_kingsleyae
ENSELUG00000006651	srrt	50	71.613	ENSPEMG00000010834	Srrt	89	70.968	Peromyscus_maniculatus_bairdii
ENSELUG00000006651	srrt	96	52.772	ENSPMAG00000009614	-	83	60.870	Petromyzon_marinus
ENSELUG00000006651	srrt	83	64.871	ENSPFOG00000016554	-	85	64.240	Poecilia_formosa
ENSELUG00000006651	srrt	95	73.227	ENSPLAG00000021992	srrt	96	73.072	Poecilia_latipinna
ENSELUG00000006651	srrt	72	64.516	ENSPLAG00000004526	-	89	63.889	Poecilia_latipinna
ENSELUG00000006651	srrt	81	63.946	ENSPMEG00000001520	-	85	63.288	Poecilia_mexicana
ENSELUG00000006651	srrt	73	90.047	ENSPMEG00000001182	srrt	84	90.141	Poecilia_mexicana
ENSELUG00000006651	srrt	95	74.023	ENSPREG00000022308	srrt	96	74.023	Poecilia_reticulata
ENSELUG00000006651	srrt	50	68.354	ENSPPYG00000017432	SRRT	95	65.823	Pongo_abelii
ENSELUG00000006651	srrt	64	67.164	ENSPVAG00000000834	SRRT	100	57.476	Pteropus_vampyrus
ENSELUG00000006651	srrt	90	90.683	ENSPNAG00000010629	srrt	95	90.683	Pygocentrus_nattereri
ENSELUG00000006651	srrt	50	65.948	ENSRNOG00000048277	AABR07035787.1	92	65.302	Rattus_norvegicus
ENSELUG00000006651	srrt	72	60.619	ENSSHAG00000007349	-	99	60.414	Sarcophilus_harrisii
ENSELUG00000006651	srrt	95	76.196	ENSSFOG00015017293	srrt	95	76.993	Scleropages_formosus
ENSELUG00000006651	srrt	82	84.348	ENSSMAG00000015342	srrt	88	83.878	Scophthalmus_maximus
ENSELUG00000006651	srrt	50	86.214	ENSSDUG00000012049	srrt	95	76.295	Seriola_dumerili
ENSELUG00000006651	srrt	52	56.173	ENSSDUG00000002051	-	94	56.025	Seriola_dumerili
ENSELUG00000006651	srrt	82	85.000	ENSSLDG00000017477	srrt	87	85.000	Seriola_lalandi_dorsalis
ENSELUG00000006651	srrt	50	58.190	ENSSPAG00000018943	-	94	58.369	Stegastes_partitus
ENSELUG00000006651	srrt	80	74.664	ENSSSCG00000024789	SRRT	54	74.603	Sus_scrofa
ENSELUG00000006651	srrt	75	65.180	ENSTNIG00000011779	srrt	100	66.523	Tetraodon_nigroviridis
ENSELUG00000006651	srrt	58	76.309	ENSTBEG00000005212	SRRT	57	77.208	Tupaia_belangeri
ENSELUG00000006651	srrt	71	71.856	ENSXETG00000025124	srrt	72	78.261	Xenopus_tropicalis
ENSELUG00000006651	srrt	51	52.778	ENSXCOG00000013105	-	92	52.878	Xiphophorus_couchianus
ENSELUG00000006651	srrt	78	85.156	ENSXMAG00000007627	srrt	88	86.694	Xiphophorus_maculatus