EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000006787 (Gene tree)
Gene ID: -
Gene Symbol: lig4
Alias: zgc:165595
Full Name: ligase IV%2C DNA%2C ATP-dependent
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 4822 bases
Position: chrAZJR03000280.1:671394-676215
Accession: ZDB-GENE-070820-10
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000029768	RNA_ligase	PF09414.10	1.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000010022	-	2739	-	ENSELUP00000029768	912 (aa)	-	-

Gene Model

Click here to download ENSELUG00000006787's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000006787's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000006787	lig4	99	67.034	ENSG00000174405	LIG4	100	67.494	Homo_sapiens
ENSELUG00000006787	lig4	99	84.316	ENSAPOG00000000866	lig4	98	84.205	Acanthochromis_polyacanthus
ENSELUG00000006787	lig4	99	65.708	ENSAMEG00000019685	LIG4	98	65.597	Ailuropoda_melanoleuca
ENSELUG00000006787	lig4	99	84.396	ENSACIG00000018309	lig4	99	84.286	Amphilophus_citrinellus
ENSELUG00000006787	lig4	99	84.205	ENSAOCG00000011768	lig4	98	84.093	Amphiprion_ocellaris
ENSELUG00000006787	lig4	99	84.427	ENSAPEG00000017815	lig4	98	84.316	Amphiprion_percula
ENSELUG00000006787	lig4	99	83.516	ENSATEG00000005583	lig4	99	83.407	Anabas_testudineus
ENSELUG00000006787	lig4	96	67.995	ENSAPLG00000001673	LIG4	99	67.995	Anas_platyrhynchos
ENSELUG00000006787	lig4	99	69.000	ENSACAG00000014566	LIG4	99	69.000	Anolis_carolinensis
ENSELUG00000006787	lig4	99	66.483	ENSANAG00000012446	LIG4	99	66.373	Aotus_nancymaae
ENSELUG00000006787	lig4	99	83.426	ENSACLG00000027051	lig4	98	83.315	Astatotilapia_calliptera
ENSELUG00000006787	lig4	99	80.222	ENSAMXG00000008192	lig4	93	80.222	Astyanax_mexicanus
ENSELUG00000006787	lig4	99	66.483	ENSBTAG00000015868	LIG4	99	66.373	Bos_taurus
ENSELUG00000006787	lig4	99	66.262	ENSCJAG00000014689	LIG4	99	66.152	Callithrix_jacchus
ENSELUG00000006787	lig4	99	66.152	ENSCAFG00000006031	LIG4	99	66.042	Canis_familiaris
ENSELUG00000006787	lig4	99	66.152	ENSCAFG00020021230	LIG4	99	66.042	Canis_lupus_dingo
ENSELUG00000006787	lig4	99	66.262	ENSCHIG00000001019	LIG4	99	66.152	Capra_hircus
ENSELUG00000006787	lig4	99	65.487	ENSCAPG00000006284	LIG4	99	65.487	Cavia_aperea
ENSELUG00000006787	lig4	99	65.160	ENSCPOG00000014266	LIG4	99	65.160	Cavia_porcellus
ENSELUG00000006787	lig4	99	67.255	ENSCCAG00000019971	LIG4	99	67.144	Cebus_capucinus
ENSELUG00000006787	lig4	99	66.924	ENSCATG00000021075	LIG4	99	66.814	Cercocebus_atys
ENSELUG00000006787	lig4	99	65.821	ENSCLAG00000003376	LIG4	99	65.711	Chinchilla_lanigera
ENSELUG00000006787	lig4	99	66.924	ENSCSAG00000000211	LIG4	99	66.814	Chlorocebus_sabaeus
ENSELUG00000006787	lig4	99	70.432	ENSCPBG00000023291	LIG4	99	69.912	Chrysemys_picta_bellii
ENSELUG00000006787	lig4	69	46.288	ENSCING00000009536	-	95	46.411	Ciona_intestinalis
ENSELUG00000006787	lig4	83	45.609	ENSCSAVG00000010336	-	98	45.419	Ciona_savignyi
ENSELUG00000006787	lig4	99	66.483	ENSCANG00000005805	LIG4	99	66.373	Colobus_angolensis_palliatus
ENSELUG00000006787	lig4	99	65.969	ENSCGRG00001012072	Lig4	99	65.969	Cricetulus_griseus_chok1gshd
ENSELUG00000006787	lig4	99	65.969	ENSCGRG00000013417	Lig4	99	65.969	Cricetulus_griseus_crigri
ENSELUG00000006787	lig4	96	81.393	ENSCSEG00000013905	lig4	95	81.393	Cynoglossus_semilaevis
ENSELUG00000006787	lig4	99	84.205	ENSCVAG00000007896	lig4	98	84.093	Cyprinodon_variegatus
ENSELUG00000006787	lig4	99	80.222	ENSDARG00000060620	lig4	99	80.222	Danio_rerio
ENSELUG00000006787	lig4	99	65.859	ENSDNOG00000000513	LIG4	99	65.969	Dasypus_novemcinctus
ENSELUG00000006787	lig4	99	67.219	ENSDORG00000027303	Lig4	99	67.108	Dipodomys_ordii
ENSELUG00000006787	lig4	90	30.664	FBgn0030506	Lig4	92	30.540	Drosophila_melanogaster
ENSELUG00000006787	lig4	98	64.784	ENSETEG00000015563	LIG4	100	64.341	Echinops_telfairi
ENSELUG00000006787	lig4	99	44.921	ENSEBUG00000014243	lig4	99	44.538	Eptatretus_burgeri
ENSELUG00000006787	lig4	99	66.152	ENSEASG00005022073	LIG4	99	66.152	Equus_asinus_asinus
ENSELUG00000006787	lig4	99	66.152	ENSECAG00000003257	LIG4	99	66.152	Equus_caballus
ENSELUG00000006787	lig4	100	64.667	ENSFCAG00000031985	LIG4	100	64.558	Felis_catus
ENSELUG00000006787	lig4	87	69.472	ENSFALG00000004214	LIG4	96	69.472	Ficedula_albicollis
ENSELUG00000006787	lig4	99	64.537	ENSFDAG00000008973	LIG4	99	64.427	Fukomys_damarensis
ENSELUG00000006787	lig4	99	82.766	ENSFHEG00000007398	lig4	90	82.656	Fundulus_heteroclitus
ENSELUG00000006787	lig4	85	77.548	ENSGMOG00000012843	lig4	99	77.548	Gadus_morhua
ENSELUG00000006787	lig4	99	66.411	ENSGALG00000016854	LIG4	99	66.411	Gallus_gallus
ENSELUG00000006787	lig4	98	82.183	ENSGAFG00000019779	lig4	95	82.131	Gambusia_affinis
ENSELUG00000006787	lig4	99	79.778	ENSGACG00000014135	lig4	99	79.667	Gasterosteus_aculeatus
ENSELUG00000006787	lig4	99	66.814	ENSGGOG00000027771	LIG4	99	66.703	Gorilla_gorilla
ENSELUG00000006787	lig4	99	83.204	ENSHBUG00000006245	lig4	98	83.092	Haplochromis_burtoni
ENSELUG00000006787	lig4	99	64.939	ENSHGLG00000000718	LIG4	99	64.829	Heterocephalus_glaber_female
ENSELUG00000006787	lig4	99	64.939	ENSHGLG00100003265	LIG4	99	64.829	Heterocephalus_glaber_male
ENSELUG00000006787	lig4	99	78.778	ENSHCOG00000012010	lig4	98	78.444	Hippocampus_comes
ENSELUG00000006787	lig4	99	78.571	ENSIPUG00000013748	lig4	99	78.571	Ictalurus_punctatus
ENSELUG00000006787	lig4	99	66.336	ENSSTOG00000024303	LIG4	99	66.225	Ictidomys_tridecemlineatus
ENSELUG00000006787	lig4	99	65.308	ENSJJAG00000006750	Lig4	99	65.419	Jaculus_jaculus
ENSELUG00000006787	lig4	99	80.756	ENSKMAG00000001149	lig4	98	80.645	Kryptolebias_marmoratus
ENSELUG00000006787	lig4	91	82.651	ENSLBEG00000014578	lig4	100	82.530	Labrus_bergylta
ENSELUG00000006787	lig4	99	69.145	ENSLACG00000003282	LIG4	98	69.034	Latimeria_chalumnae
ENSELUG00000006787	lig4	99	75.388	ENSLOCG00000008901	lig4	97	75.388	Lepisosteus_oculatus
ENSELUG00000006787	lig4	99	65.083	ENSLAFG00000031152	LIG4	99	64.641	Loxodonta_africana
ENSELUG00000006787	lig4	99	67.034	ENSMFAG00000037235	LIG4	99	66.924	Macaca_fascicularis
ENSELUG00000006787	lig4	99	66.814	ENSMMUG00000008874	LIG4	99	66.703	Macaca_mulatta
ENSELUG00000006787	lig4	99	67.034	ENSMNEG00000023575	LIG4	99	66.924	Macaca_nemestrina
ENSELUG00000006787	lig4	99	66.924	ENSMLEG00000026720	LIG4	99	66.814	Mandrillus_leucophaeus
ENSELUG00000006787	lig4	99	84.316	ENSMAMG00000008472	lig4	98	84.205	Mastacembelus_armatus
ENSELUG00000006787	lig4	99	83.426	ENSMZEG00005001855	lig4	98	83.315	Maylandia_zebra
ENSELUG00000006787	lig4	99	66.850	ENSMGAG00000015532	LIG4	99	66.850	Meleagris_gallopavo
ENSELUG00000006787	lig4	99	65.380	ENSMOCG00000019000	Lig4	99	65.380	Microtus_ochrogaster
ENSELUG00000006787	lig4	99	81.535	ENSMMOG00000004390	lig4	98	81.535	Mola_mola
ENSELUG00000006787	lig4	99	66.519	ENSMODG00000025064	LIG4	99	66.740	Monodelphis_domestica
ENSELUG00000006787	lig4	99	83.150	ENSMALG00000008555	lig4	99	83.040	Monopterus_albus
ENSELUG00000006787	lig4	99	66.042	MGP_CAROLIEiJ_G0030809	Lig4	99	65.711	Mus_caroli
ENSELUG00000006787	lig4	99	65.821	ENSMUSG00000049717	Lig4	99	65.491	Mus_musculus
ENSELUG00000006787	lig4	99	65.711	MGP_PahariEiJ_G0021270	Lig4	99	65.711	Mus_pahari
ENSELUG00000006787	lig4	99	65.932	MGP_SPRETEiJ_G0031917	Lig4	99	65.601	Mus_spretus
ENSELUG00000006787	lig4	99	65.929	ENSMPUG00000018675	LIG4	99	65.819	Mustela_putorius_furo
ENSELUG00000006787	lig4	99	66.703	ENSMLUG00000001267	LIG4	99	66.593	Myotis_lucifugus
ENSELUG00000006787	lig4	99	66.336	ENSNGAG00000013258	Lig4	99	66.225	Nannospalax_galili
ENSELUG00000006787	lig4	99	83.315	ENSNBRG00000021252	lig4	98	83.204	Neolamprologus_brichardi
ENSELUG00000006787	lig4	99	66.703	ENSNLEG00000007888	LIG4	99	66.593	Nomascus_leucogenys
ENSELUG00000006787	lig4	99	64.388	ENSOPRG00000005765	LIG4	99	64.388	Ochotona_princeps
ENSELUG00000006787	lig4	99	64.537	ENSODEG00000019683	LIG4	99	64.648	Octodon_degus
ENSELUG00000006787	lig4	99	83.982	ENSONIG00000011969	lig4	97	83.871	Oreochromis_niloticus
ENSELUG00000006787	lig4	99	65.821	ENSOCUG00000015734	LIG4	99	65.711	Oryctolagus_cuniculus
ENSELUG00000006787	lig4	99	80.244	ENSORLG00000004041	lig4	99	80.244	Oryzias_latipes
ENSELUG00000006787	lig4	99	80.133	ENSORLG00020019607	lig4	99	79.779	Oryzias_latipes_hni
ENSELUG00000006787	lig4	99	79.911	ENSORLG00015017754	lig4	99	79.911	Oryzias_latipes_hsok
ENSELUG00000006787	lig4	74	84.934	ENSOMEG00000003459	lig4	98	84.786	Oryzias_melastigma
ENSELUG00000006787	lig4	99	66.519	ENSOGAG00000032120	LIG4	99	66.409	Otolemur_garnettii
ENSELUG00000006787	lig4	81	68.961	ENSOARG00000005590	LIG4	98	68.826	Ovis_aries
ENSELUG00000006787	lig4	99	66.814	ENSPPAG00000032998	LIG4	99	66.703	Pan_paniscus
ENSELUG00000006787	lig4	100	65.104	ENSPPRG00000017804	LIG4	100	64.995	Panthera_pardus
ENSELUG00000006787	lig4	100	64.995	ENSPTIG00000010051	LIG4	100	64.885	Panthera_tigris_altaica
ENSELUG00000006787	lig4	99	66.924	ENSPTRG00000006025	LIG4	99	66.814	Pan_troglodytes
ENSELUG00000006787	lig4	99	67.034	ENSPANG00000007562	LIG4	99	66.924	Papio_anubis
ENSELUG00000006787	lig4	99	78.658	ENSPKIG00000011645	lig4	98	78.658	Paramormyrops_kingsleyae
ENSELUG00000006787	lig4	99	69.484	ENSPSIG00000001504	LIG4	99	69.484	Pelodiscus_sinensis
ENSELUG00000006787	lig4	98	77.703	ENSPMGG00000013486	lig4	98	77.889	Periophthalmus_magnuspinnatus
ENSELUG00000006787	lig4	99	65.198	ENSPEMG00000000076	Lig4	99	65.198	Peromyscus_maniculatus_bairdii
ENSELUG00000006787	lig4	99	66.519	ENSPCIG00000021882	LIG4	99	66.519	Phascolarctos_cinereus
ENSELUG00000006787	lig4	98	83.166	ENSPFOG00000000797	lig4	98	83.111	Poecilia_formosa
ENSELUG00000006787	lig4	98	83.055	ENSPLAG00000001196	lig4	98	83.000	Poecilia_latipinna
ENSELUG00000006787	lig4	98	83.389	ENSPMEG00000021353	lig4	98	83.333	Poecilia_mexicana
ENSELUG00000006787	lig4	98	82.832	ENSPREG00000007323	lig4	98	82.667	Poecilia_reticulata
ENSELUG00000006787	lig4	99	66.373	ENSPPYG00000005540	LIG4	99	66.262	Pongo_abelii
ENSELUG00000006787	lig4	99	66.373	ENSPVAG00000016403	LIG4	99	66.262	Pteropus_vampyrus
ENSELUG00000006787	lig4	99	83.426	ENSPNYG00000009660	lig4	98	83.315	Pundamilia_nyererei
ENSELUG00000006787	lig4	99	82.575	ENSPNAG00000028056	lig4	99	82.575	Pygocentrus_nattereri
ENSELUG00000006787	lig4	99	82.575	ENSPNAG00000028069	LIG4	99	82.575	Pygocentrus_nattereri
ENSELUG00000006787	lig4	99	65.380	ENSRNOG00000014605	Lig4	99	65.308	Rattus_norvegicus
ENSELUG00000006787	lig4	99	65.491	ENSRBIG00000039962	LIG4	99	65.380	Rhinopithecus_bieti
ENSELUG00000006787	lig4	99	66.373	ENSRROG00000006040	LIG4	99	66.262	Rhinopithecus_roxellana
ENSELUG00000006787	lig4	99	66.373	ENSSBOG00000019029	LIG4	99	66.262	Saimiri_boliviensis_boliviensis
ENSELUG00000006787	lig4	99	64.199	ENSSHAG00000009525	LIG4	99	64.088	Sarcophilus_harrisii
ENSELUG00000006787	lig4	99	80.423	ENSSFOG00015012835	lig4	98	80.423	Scleropages_formosus
ENSELUG00000006787	lig4	99	79.422	ENSSMAG00000011267	lig4	98	79.422	Scophthalmus_maximus
ENSELUG00000006787	lig4	99	83.278	ENSSDUG00000010343	lig4	98	83.278	Seriola_dumerili
ENSELUG00000006787	lig4	99	81.728	ENSSLDG00000003239	lig4	98	81.728	Seriola_lalandi_dorsalis
ENSELUG00000006787	lig4	99	64.609	ENSSARG00000006573	LIG4	99	64.498	Sorex_araneus
ENSELUG00000006787	lig4	92	69.751	ENSSPUG00000002444	LIG4	100	70.344	Sphenodon_punctatus
ENSELUG00000006787	lig4	99	83.315	ENSSPAG00000001609	lig4	98	83.204	Stegastes_partitus
ENSELUG00000006787	lig4	99	64.758	ENSSSCG00000009540	LIG4	99	65.088	Sus_scrofa
ENSELUG00000006787	lig4	99	68.333	ENSTGUG00000010795	LIG4	99	68.333	Taeniopygia_guttata
ENSELUG00000006787	lig4	99	81.313	ENSTRUG00000009984	lig4	98	81.201	Takifugu_rubripes
ENSELUG00000006787	lig4	100	79.299	ENSTNIG00000010348	lig4	100	79.409	Tetraodon_nigroviridis
ENSELUG00000006787	lig4	99	66.373	ENSTBEG00000017741	LIG4	99	66.373	Tupaia_belangeri
ENSELUG00000006787	lig4	99	65.491	ENSTTRG00000012660	LIG4	99	65.380	Tursiops_truncatus
ENSELUG00000006787	lig4	99	65.376	ENSUAMG00000003773	LIG4	99	65.265	Ursus_americanus
ENSELUG00000006787	lig4	99	67.481	ENSXETG00000002654	lig4	98	67.481	Xenopus_tropicalis
ENSELUG00000006787	lig4	98	82.720	ENSXCOG00000017401	lig4	99	81.778	Xiphophorus_couchianus
ENSELUG00000006787	lig4	98	82.943	ENSXMAG00000015142	lig4	99	81.998	Xiphophorus_maculatus