EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000006826 (Gene tree)
Gene ID: 105016115
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 30045 bases
Position: chrLG16:9803615-9833659
Accession: 105016115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000005843	Rif1_N	PF12231.8	7.9e-81	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000009955	-	8932	XM_013137904	ENSELUP00000005843	2843 (aa)	XP_012993358	-

Gene Model

Click here to download ENSELUG00000006826's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000006826's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000006826	rif1	56	50.631	ENSG00000080345	RIF1	97	55.218	Homo_sapiens
ENSELUG00000006826	rif1	67	65.574	ENSAPOG00000011073	rif1	71	65.574	Acanthochromis_polyacanthus
ENSELUG00000006826	rif1	56	50.831	ENSAMEG00000008461	RIF1	63	50.758	Ailuropoda_melanoleuca
ENSELUG00000006826	rif1	59	68.000	ENSACIG00000017765	rif1	73	68.000	Amphilophus_citrinellus
ENSELUG00000006826	rif1	68	64.481	ENSAOCG00000017231	rif1	76	64.481	Amphiprion_ocellaris
ENSELUG00000006826	rif1	64	69.202	ENSAPEG00000013228	rif1	75	69.351	Amphiprion_percula
ENSELUG00000006826	rif1	72	69.444	ENSATEG00000022887	rif1	88	69.444	Anabas_testudineus
ENSELUG00000006826	rif1	60	48.424	ENSAPLG00000007092	RIF1	68	52.841	Anas_platyrhynchos
ENSELUG00000006826	rif1	56	50.000	ENSACAG00000003714	RIF1	66	50.357	Anolis_carolinensis
ENSELUG00000006826	rif1	58	49.405	ENSANAG00000024840	RIF1	66	49.175	Aotus_nancymaae
ENSELUG00000006826	rif1	69	67.514	ENSAMXG00000010910	rif1	68	67.514	Astyanax_mexicanus
ENSELUG00000006826	rif1	50	51.436	ENSBTAG00000021020	RIF1	61	51.885	Bos_taurus
ENSELUG00000006826	rif1	56	50.826	ENSCJAG00000003138	RIF1	63	50.753	Callithrix_jacchus
ENSELUG00000006826	rif1	58	48.325	ENSCAFG00000005670	RIF1	64	48.310	Canis_familiaris
ENSELUG00000006826	rif1	58	48.325	ENSCAFG00020016401	RIF1	64	50.359	Canis_lupus_dingo
ENSELUG00000006826	rif1	56	51.152	ENSCHIG00000020327	RIF1	62	51.406	Capra_hircus
ENSELUG00000006826	rif1	57	48.339	ENSTSYG00000008861	RIF1	64	48.405	Carlito_syrichta
ENSELUG00000006826	rif1	55	48.390	ENSCPOG00000037898	RIF1	63	48.434	Cavia_porcellus
ENSELUG00000006826	rif1	56	48.854	ENSCCAG00000024760	RIF1	62	49.247	Cebus_capucinus
ENSELUG00000006826	rif1	56	50.830	ENSCATG00000033353	RIF1	62	50.955	Cercocebus_atys
ENSELUG00000006826	rif1	54	51.466	ENSCLAG00000001517	RIF1	64	51.552	Chinchilla_lanigera
ENSELUG00000006826	rif1	58	50.909	ENSCSAG00000016089	RIF1	65	51.035	Chlorocebus_sabaeus
ENSELUG00000006826	rif1	53	51.327	ENSCHOG00000007187	RIF1	60	50.926	Choloepus_hoffmanni
ENSELUG00000006826	rif1	58	51.031	ENSCPBG00000025885	RIF1	71	51.282	Chrysemys_picta_bellii
ENSELUG00000006826	rif1	52	54.615	ENSCANG00000028962	RIF1	63	54.615	Colobus_angolensis_palliatus
ENSELUG00000006826	rif1	59	46.429	ENSCGRG00001024589	Rif1	68	47.126	Cricetulus_griseus_chok1gshd
ENSELUG00000006826	rif1	58	47.803	ENSCGRG00000010713	Rif1	68	48.332	Cricetulus_griseus_crigri
ENSELUG00000006826	rif1	64	71.587	ENSCSEG00000003945	rif1	73	71.587	Cynoglossus_semilaevis
ENSELUG00000006826	rif1	64	63.352	ENSCVAG00000022479	rif1	88	63.352	Cyprinodon_variegatus
ENSELUG00000006826	rif1	65	65.826	ENSDARG00000062650	rif1	70	65.826	Danio_rerio
ENSELUG00000006826	rif1	60	47.977	ENSDNOG00000011194	RIF1	60	50.562	Dasypus_novemcinctus
ENSELUG00000006826	rif1	53	56.680	ENSETEG00000012421	RIF1	61	56.680	Echinops_telfairi
ENSELUG00000006826	rif1	56	49.841	ENSEASG00005023434	RIF1	58	55.777	Equus_asinus_asinus
ENSELUG00000006826	rif1	52	60.243	ENSECAG00000012679	RIF1	60	60.123	Equus_caballus
ENSELUG00000006826	rif1	56	50.473	ENSFCAG00000029742	RIF1	62	50.603	Felis_catus
ENSELUG00000006826	rif1	50	52.742	ENSFALG00000013874	RIF1	66	52.979	Ficedula_albicollis
ENSELUG00000006826	rif1	56	50.919	ENSFDAG00000006538	RIF1	64	50.958	Fukomys_damarensis
ENSELUG00000006826	rif1	67	60.054	ENSFHEG00000013721	rif1	70	62.481	Fundulus_heteroclitus
ENSELUG00000006826	rif1	58	67.669	ENSGMOG00000003517	rif1	89	67.669	Gadus_morhua
ENSELUG00000006826	rif1	51	52.035	ENSGALG00000012484	RIF1	67	52.301	Gallus_gallus
ENSELUG00000006826	rif1	65	68.770	ENSGAFG00000017196	rif1	77	68.958	Gambusia_affinis
ENSELUG00000006826	rif1	58	71.186	ENSGACG00000008579	rif1	70	65.428	Gasterosteus_aculeatus
ENSELUG00000006826	rif1	51	60.000	ENSGAGG00000012595	RIF1	68	51.420	Gopherus_agassizii
ENSELUG00000006826	rif1	64	72.761	ENSHBUG00000007125	rif1	90	72.761	Haplochromis_burtoni
ENSELUG00000006826	rif1	50	51.237	ENSHGLG00100009807	RIF1	62	51.276	Heterocephalus_glaber_male
ENSELUG00000006826	rif1	67	57.586	ENSHCOG00000015943	rif1	65	61.862	Hippocampus_comes
ENSELUG00000006826	rif1	68	65.489	ENSIPUG00000021703	rif1	69	67.159	Ictalurus_punctatus
ENSELUG00000006826	rif1	56	50.675	ENSSTOG00000020712	RIF1	65	49.071	Ictidomys_tridecemlineatus
ENSELUG00000006826	rif1	60	46.045	ENSJJAG00000023000	Rif1	63	49.959	Jaculus_jaculus
ENSELUG00000006826	rif1	64	60.501	ENSKMAG00000002852	rif1	70	63.418	Kryptolebias_marmoratus
ENSELUG00000006826	rif1	64	68.249	ENSLBEG00000023196	rif1	70	68.249	Labrus_bergylta
ENSELUG00000006826	rif1	58	54.301	ENSLACG00000005425	RIF1	68	54.201	Latimeria_chalumnae
ENSELUG00000006826	rif1	70	58.854	ENSLOCG00000002657	rif1	84	59.635	Lepisosteus_oculatus
ENSELUG00000006826	rif1	56	51.315	ENSLAFG00000009796	RIF1	63	51.245	Loxodonta_africana
ENSELUG00000006826	rif1	58	50.672	ENSMFAG00000032233	RIF1	65	50.796	Macaca_fascicularis
ENSELUG00000006826	rif1	58	50.672	ENSMMUG00000008611	RIF1	65	50.796	Macaca_mulatta
ENSELUG00000006826	rif1	58	50.751	ENSMNEG00000031616	RIF1	65	50.876	Macaca_nemestrina
ENSELUG00000006826	rif1	58	50.830	ENSMLEG00000042945	RIF1	65	50.955	Mandrillus_leucophaeus
ENSELUG00000006826	rif1	69	64.770	ENSMAMG00000001745	rif1	69	64.770	Mastacembelus_armatus
ENSELUG00000006826	rif1	64	64.110	ENSMZEG00005020920	rif1	73	64.723	Maylandia_zebra
ENSELUG00000006826	rif1	55	51.987	ENSMGAG00000012732	RIF1	69	52.188	Meleagris_gallopavo
ENSELUG00000006826	rif1	51	64.124	ENSMAUG00000013158	Rif1	61	64.535	Mesocricetus_auratus
ENSELUG00000006826	rif1	56	50.718	ENSMICG00000046127	RIF1	62	51.672	Microcebus_murinus
ENSELUG00000006826	rif1	56	48.702	ENSMOCG00000009381	Rif1	64	49.162	Microtus_ochrogaster
ENSELUG00000006826	rif1	76	53.524	ENSMMOG00000006519	rif1	90	52.473	Mola_mola
ENSELUG00000006826	rif1	56	52.226	ENSMODG00000003703	RIF1	64	52.163	Monodelphis_domestica
ENSELUG00000006826	rif1	63	63.889	ENSMALG00000016759	rif1	76	63.889	Monopterus_albus
ENSELUG00000006826	rif1	55	50.996	MGP_CAROLIEiJ_G0023555	Rif1	63	51.657	Mus_caroli
ENSELUG00000006826	rif1	58	48.591	ENSMUSG00000036202	Rif1	66	49.064	Mus_musculus
ENSELUG00000006826	rif1	59	46.018	MGP_PahariEiJ_G0025006	Rif1	67	46.988	Mus_pahari
ENSELUG00000006826	rif1	58	48.611	MGP_SPRETEiJ_G0024476	Rif1	67	49.372	Mus_spretus
ENSELUG00000006826	rif1	58	48.703	ENSMPUG00000000371	RIF1	65	49.052	Mustela_putorius_furo
ENSELUG00000006826	rif1	51	54.358	ENSNGAG00000009268	Rif1	65	50.677	Nannospalax_galili
ENSELUG00000006826	rif1	63	65.642	ENSNBRG00000014257	rif1	73	65.642	Neolamprologus_brichardi
ENSELUG00000006826	rif1	56	49.922	ENSNLEG00000010955	RIF1	62	50.079	Nomascus_leucogenys
ENSELUG00000006826	rif1	56	47.795	ENSODEG00000003950	RIF1	64	48.130	Octodon_degus
ENSELUG00000006826	rif1	68	65.537	ENSONIG00000013657	rif1	70	65.537	Oreochromis_niloticus
ENSELUG00000006826	rif1	56	49.765	ENSOCUG00000017435	RIF1	62	50.398	Oryctolagus_cuniculus
ENSELUG00000006826	rif1	65	60.857	ENSORLG00020001302	rif1	71	61.128	Oryzias_latipes_hni
ENSELUG00000006826	rif1	64	60.169	ENSORLG00015000009	rif1	71	61.128	Oryzias_latipes_hsok
ENSELUG00000006826	rif1	62	62.121	ENSOMEG00000021513	rif1	70	62.121	Oryzias_melastigma
ENSELUG00000006826	rif1	56	50.874	ENSOGAG00000006141	RIF1	62	50.801	Otolemur_garnettii
ENSELUG00000006826	rif1	56	51.621	ENSOARG00000008930	RIF1	62	51.554	Ovis_aries
ENSELUG00000006826	rif1	56	50.710	ENSPPAG00000023754	RIF1	62	50.874	Pan_paniscus
ENSELUG00000006826	rif1	56	50.394	ENSPPRG00000003618	RIF1	62	50.439	Panthera_pardus
ENSELUG00000006826	rif1	56	50.394	ENSPTIG00000020652	RIF1	62	50.439	Panthera_tigris_altaica
ENSELUG00000006826	rif1	56	50.789	ENSPTRG00000012534	RIF1	62	50.954	Pan_troglodytes
ENSELUG00000006826	rif1	58	50.830	ENSPANG00000008525	RIF1	65	50.955	Papio_anubis
ENSELUG00000006826	rif1	66	68.466	ENSPKIG00000004267	rif1	77	67.697	Paramormyrops_kingsleyae
ENSELUG00000006826	rif1	59	71.717	ENSPMGG00000016141	rif1	76	72.269	Periophthalmus_magnuspinnatus
ENSELUG00000006826	rif1	58	48.330	ENSPEMG00000000446	Rif1	68	48.411	Peromyscus_maniculatus_bairdii
ENSELUG00000006826	rif1	59	50.151	ENSPCIG00000009185	RIF1	72	49.562	Phascolarctos_cinereus
ENSELUG00000006826	rif1	64	61.972	ENSPFOG00000017804	rif1	75	61.361	Poecilia_formosa
ENSELUG00000006826	rif1	58	61.972	ENSPFOG00000000554	-	69	63.512	Poecilia_formosa
ENSELUG00000006826	rif1	62	62.762	ENSPLAG00000017945	rif1	73	63.928	Poecilia_latipinna
ENSELUG00000006826	rif1	56	61.690	ENSPMEG00000006897	-	68	62.692	Poecilia_mexicana
ENSELUG00000006826	rif1	60	67.083	ENSPREG00000018052	rif1	67	68.633	Poecilia_reticulata
ENSELUG00000006826	rif1	56	50.830	ENSPPYG00000012846	RIF1	62	50.996	Pongo_abelii
ENSELUG00000006826	rif1	56	50.718	ENSPCOG00000027888	RIF1	62	51.631	Propithecus_coquereli
ENSELUG00000006826	rif1	50	60.164	ENSPVAG00000014276	RIF1	59	60.377	Pteropus_vampyrus
ENSELUG00000006826	rif1	73	66.698	ENSPNYG00000012940	rif1	72	64.110	Pundamilia_nyererei
ENSELUG00000006826	rif1	70	61.607	ENSPNAG00000016685	rif1	71	66.494	Pygocentrus_nattereri
ENSELUG00000006826	rif1	55	48.694	ENSRNOG00000054901	Rif1	66	46.771	Rattus_norvegicus
ENSELUG00000006826	rif1	59	48.187	ENSRBIG00000003704	RIF1	67	48.618	Rhinopithecus_bieti
ENSELUG00000006826	rif1	56	50.831	ENSRROG00000028206	RIF1	64	50.957	Rhinopithecus_roxellana
ENSELUG00000006826	rif1	53	54.651	ENSSBOG00000029530	RIF1	61	53.947	Saimiri_boliviensis_boliviensis
ENSELUG00000006826	rif1	56	51.749	ENSSHAG00000018552	RIF1	65	51.308	Sarcophilus_harrisii
ENSELUG00000006826	rif1	66	64.972	ENSSFOG00015021539	rif1	80	65.363	Scleropages_formosus
ENSELUG00000006826	rif1	71	60.427	ENSSMAG00000011704	rif1	67	64.649	Scophthalmus_maximus
ENSELUG00000006826	rif1	70	64.646	ENSSDUG00000015632	rif1	84	61.663	Seriola_dumerili
ENSELUG00000006826	rif1	73	64.938	ENSSLDG00000019531	rif1	90	61.625	Seriola_lalandi_dorsalis
ENSELUG00000006826	rif1	54	51.069	ENSSPUG00000003062	RIF1	66	51.354	Sphenodon_punctatus
ENSELUG00000006826	rif1	55	68.612	ENSSPAG00000018359	rif1	91	68.410	Stegastes_partitus
ENSELUG00000006826	rif1	56	51.469	ENSSSCG00000016395	RIF1	62	51.481	Sus_scrofa
ENSELUG00000006826	rif1	67	63.025	ENSTRUG00000015808	rif1	72	64.141	Takifugu_rubripes
ENSELUG00000006826	rif1	67	62.791	ENSTNIG00000011538	rif1	71	62.791	Tetraodon_nigroviridis
ENSELUG00000006826	rif1	50	55.242	ENSTBEG00000016082	RIF1	53	55.144	Tupaia_belangeri
ENSELUG00000006826	rif1	56	51.268	ENSTTRG00000011190	RIF1	62	51.278	Tursiops_truncatus
ENSELUG00000006826	rif1	58	48.857	ENSUMAG00000000337	RIF1	64	48.857	Ursus_maritimus
ENSELUG00000006826	rif1	61	48.054	ENSVPAG00000002162	RIF1	68	47.967	Vicugna_pacos
ENSELUG00000006826	rif1	58	48.552	ENSVVUG00000011293	RIF1	66	48.539	Vulpes_vulpes
ENSELUG00000006826	rif1	60	49.288	ENSXETG00000004530	rif1	69	49.858	Xenopus_tropicalis
ENSELUG00000006826	rif1	62	59.009	ENSXMAG00000000506	rif1	73	57.576	Xiphophorus_maculatus