EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000006948 (Gene tree)
Gene ID: 105012254
Gene Symbol: -
Alias: -
Full Name: zinc finger protein Gfi-1b-like
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 10998 bases
Position: chrLG09:7558111-7569108
Accession: 105012254
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000005999	zf-C2H2	PF00096.26	5.6e-22	1	4
ENSELUP00000005999	zf-C2H2	PF00096.26	5.6e-22	2	4
ENSELUP00000005999	zf-C2H2	PF00096.26	5.6e-22	3	4
ENSELUP00000005999	zf-C2H2	PF00096.26	5.6e-22	4	4
ENSELUP00000005999	zf-met	PF12874.7	1.2e-06	1	2
ENSELUP00000005999	zf-met	PF12874.7	1.2e-06	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000009687	-	4487	XM_010872946	ENSELUP00000005999	335 (aa)	XP_010871248	UPI00057637BE

Gene Model

Click here to download ENSELUG00000006948's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000006948's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000006948	-	51	37.607	ENSELUG00000000281	-	68	43.396
ENSELUG00000006948	-	53	40.000	ENSELUG00000021551	-	53	33.133

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000006948	-	57	58.333	ENSAMXG00000039600	gfi1ab	50	58.333	Astyanax_mexicanus
ENSELUG00000006948	-	59	57.286	ENSAMXG00000006669	GFI1	57	57.286	Astyanax_mexicanus
ENSELUG00000006948	-	52	67.241	ENSAMXG00000015228	-	54	67.241	Astyanax_mexicanus
ENSELUG00000006948	-	99	40.365	ENSCVAG00000011828	gfi1ab	99	40.519	Cyprinodon_variegatus
ENSELUG00000006948	-	99	45.533	ENSFHEG00000002747	-	99	46.667	Fundulus_heteroclitus
ENSELUG00000006948	-	51	63.953	ENSGALG00000043650	GFI1	99	63.953	Gallus_gallus
ENSELUG00000006948	-	99	44.575	ENSGAFG00000014303	-	89	43.275	Gambusia_affinis
ENSELUG00000006948	-	62	57.346	ENSGAFG00000016637	gfi1ab	51	57.346	Gambusia_affinis
ENSELUG00000006948	-	62	56.459	ENSHBUG00000011969	gfi1ab	53	56.459	Haplochromis_burtoni
ENSELUG00000006948	-	99	41.147	ENSHCOG00000008590	gfi1ab	99	40.898	Hippocampus_comes
ENSELUG00000006948	-	51	67.836	ENSIPUG00000021407	-	55	67.241	Ictalurus_punctatus
ENSELUG00000006948	-	99	60.753	ENSLBEG00000027776	gfi1ab	99	60.753	Labrus_bergylta
ENSELUG00000006948	-	51	64.912	ENSORLG00020002817	GFI1	52	64.912	Oryzias_latipes_hni
ENSELUG00000006948	-	100	47.647	ENSPFOG00000024581	-	99	47.522	Poecilia_formosa
ENSELUG00000006948	-	57	56.771	ENSPREG00000007997	GFI1	51	67.308	Poecilia_reticulata
ENSELUG00000006948	-	99	63.855	ENSPNAG00000028014	GFI1	55	63.855	Pygocentrus_nattereri
ENSELUG00000006948	-	72	53.386	ENSPNAG00000014299	-	79	53.785	Pygocentrus_nattereri
ENSELUG00000006948	-	63	63.256	ENSSFOG00015008114	-	66	63.256	Scleropages_formosus
ENSELUG00000006948	-	99	43.966	ENSSMAG00000002798	-	98	43.353	Scophthalmus_maximus
ENSELUG00000006948	-	100	47.353	ENSXMAG00000006527	-	99	46.802	Xiphophorus_maculatus
ENSELUG00000006948	-	62	58.294	ENSXMAG00000010523	gfi1ab	51	58.294	Xiphophorus_maculatus