EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000007120 (Gene tree)
Gene ID: 105008631
Gene Symbol: prpf8
Alias: id:ibd1257|ik:tdsubc_2a9|im:7141966|tdsubc_2a9|wu:fb37c02|wu:fb73e06|xx:tdsubc_2a9|zgc:56504
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 17819 bases
Position: chrLG01:15914185-15932003
Accession: 105008631
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000030003	RRM_4	PF10598.9	3.9e-48	1	1
ENSELUP00000030003	U5_2-snRNA_bdg	PF10597.9	9.1e-74	1	1
ENSELUP00000030003	PRO8NT	PF08082.11	7.6e-87	1	1
ENSELUP00000030003	U6-snRNA_bdg	PF10596.9	1.6e-89	1	1
ENSELUP00000030003	PROCN	PF08083.11	2.9e-235	1	1
ENSELUP00000030003	PRP8_domainIV	PF12134.8	5.4e-130	1	1
ENSELUP00000030003	PROCT	PF08084.11	6.7e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000009413	-	6843	XM_010867997	ENSELUP00000030003	2280 (aa)	XP_010866299	-

Gene Model

Click here to download ENSELUG00000007120's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000007120's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000007120	prpf8	99	96.547	ENSG00000174231	PRPF8	98	96.547	Homo_sapiens
ENSELUG00000007120	prpf8	99	97.858	ENSAPOG00000010079	prpf8	98	97.858	Acanthochromis_polyacanthus
ENSELUG00000007120	prpf8	99	96.547	ENSAMEG00000007940	PRPF8	98	96.547	Ailuropoda_melanoleuca
ENSELUG00000007120	prpf8	99	95.792	ENSACIG00000018280	prpf8	98	95.792	Amphilophus_citrinellus
ENSELUG00000007120	prpf8	99	97.815	ENSAOCG00000010725	prpf8	98	97.815	Amphiprion_ocellaris
ENSELUG00000007120	prpf8	99	97.815	ENSAPEG00000014397	prpf8	98	97.815	Amphiprion_percula
ENSELUG00000007120	prpf8	99	97.159	ENSATEG00000010062	prpf8	98	97.159	Anabas_testudineus
ENSELUG00000007120	prpf8	95	96.906	ENSAPLG00000010357	PRPF8	98	96.906	Anas_platyrhynchos
ENSELUG00000007120	prpf8	85	96.031	ENSACAG00000014784	PRPF8	99	96.031	Anolis_carolinensis
ENSELUG00000007120	prpf8	99	96.547	ENSANAG00000032629	PRPF8	98	96.547	Aotus_nancymaae
ENSELUG00000007120	prpf8	99	97.261	ENSACLG00000020858	prpf8	98	97.913	Astatotilapia_calliptera
ENSELUG00000007120	prpf8	99	97.421	ENSAMXG00000020291	prpf8	98	97.421	Astyanax_mexicanus
ENSELUG00000007120	prpf8	99	96.547	ENSBTAG00000011488	PRPF8	98	96.547	Bos_taurus
ENSELUG00000007120	prpf8	99	86.027	WBGene00004187	prp-8	97	86.388	Caenorhabditis_elegans
ENSELUG00000007120	prpf8	99	96.547	ENSCJAG00000001911	PRPF8	98	96.547	Callithrix_jacchus
ENSELUG00000007120	prpf8	99	96.547	ENSCAFG00000019221	PRPF8	98	96.547	Canis_familiaris
ENSELUG00000007120	prpf8	95	96.942	ENSCAFG00020009943	PRPF8	98	96.942	Canis_lupus_dingo
ENSELUG00000007120	prpf8	99	96.547	ENSCHIG00000017499	PRPF8	98	96.547	Capra_hircus
ENSELUG00000007120	prpf8	99	96.547	ENSTSYG00000014120	PRPF8	98	96.547	Carlito_syrichta
ENSELUG00000007120	prpf8	95	94.670	ENSCAPG00000009459	PRPF8	97	94.670	Cavia_aperea
ENSELUG00000007120	prpf8	99	96.547	ENSCPOG00000010379	PRPF8	98	96.547	Cavia_porcellus
ENSELUG00000007120	prpf8	99	96.547	ENSCCAG00000031983	-	98	96.547	Cebus_capucinus
ENSELUG00000007120	prpf8	99	96.547	ENSCATG00000038595	PRPF8	98	96.547	Cercocebus_atys
ENSELUG00000007120	prpf8	99	96.547	ENSCLAG00000004388	PRPF8	98	96.547	Chinchilla_lanigera
ENSELUG00000007120	prpf8	99	96.547	ENSCSAG00000013929	PRPF8	98	96.547	Chlorocebus_sabaeus
ENSELUG00000007120	prpf8	83	97.333	ENSCHOG00000008590	PRPF8	88	97.333	Choloepus_hoffmanni
ENSELUG00000007120	prpf8	99	96.503	ENSCPBG00000020409	PRPF8	98	96.503	Chrysemys_picta_bellii
ENSELUG00000007120	prpf8	98	92.874	ENSCSAVG00000007825	-	98	90.690	Ciona_savignyi
ENSELUG00000007120	prpf8	99	96.547	ENSCANG00000043088	PRPF8	98	96.547	Colobus_angolensis_palliatus
ENSELUG00000007120	prpf8	72	98.819	ENSCGRG00000005129	Prpf8	97	98.819	Cricetulus_griseus_crigri
ENSELUG00000007120	prpf8	99	97.641	ENSCSEG00000007905	prpf8	98	97.641	Cynoglossus_semilaevis
ENSELUG00000007120	prpf8	99	97.557	ENSDARG00000026180	prpf8	98	97.557	Danio_rerio
ENSELUG00000007120	prpf8	95	97.747	ENSDNOG00000018471	PRPF8	99	97.747	Dasypus_novemcinctus
ENSELUG00000007120	prpf8	83	96.459	ENSDORG00000006185	Prpf8	94	96.459	Dipodomys_ordii
ENSELUG00000007120	prpf8	99	90.686	FBgn0033688	Prp8	94	91.170	Drosophila_melanogaster
ENSELUG00000007120	prpf8	97	94.519	ENSETEG00000017592	PRPF8	95	94.519	Echinops_telfairi
ENSELUG00000007120	prpf8	99	92.412	ENSEBUG00000006548	prpf8	98	92.412	Eptatretus_burgeri
ENSELUG00000007120	prpf8	99	96.547	ENSEASG00005009514	PRPF8	99	97.381	Equus_asinus_asinus
ENSELUG00000007120	prpf8	96	96.989	ENSECAG00000021318	PRPF8	98	96.989	Equus_caballus
ENSELUG00000007120	prpf8	67	98.519	ENSEEUG00000012120	-	65	98.519	Erinaceus_europaeus
ENSELUG00000007120	prpf8	99	96.547	ENSFCAG00000006297	PRPF8	98	96.547	Felis_catus
ENSELUG00000007120	prpf8	99	96.591	ENSFALG00000006628	PRPF8	98	96.591	Ficedula_albicollis
ENSELUG00000007120	prpf8	99	96.547	ENSFDAG00000004711	PRPF8	98	96.547	Fukomys_damarensis
ENSELUG00000007120	prpf8	99	97.382	ENSFHEG00000021084	prpf8	98	97.382	Fundulus_heteroclitus
ENSELUG00000007120	prpf8	99	96.022	ENSGMOG00000002028	prpf8	98	96.022	Gadus_morhua
ENSELUG00000007120	prpf8	99	96.591	ENSGALG00000002943	PRPF8	98	96.591	Gallus_gallus
ENSELUG00000007120	prpf8	99	97.413	ENSGAFG00000010337	prpf8	97	97.413	Gambusia_affinis
ENSELUG00000007120	prpf8	99	97.552	ENSGACG00000008504	prpf8	98	97.552	Gasterosteus_aculeatus
ENSELUG00000007120	prpf8	99	96.547	ENSGAGG00000008350	PRPF8	98	96.547	Gopherus_agassizii
ENSELUG00000007120	prpf8	99	96.547	ENSGGOG00000005516	PRPF8	98	96.547	Gorilla_gorilla
ENSELUG00000007120	prpf8	99	97.509	ENSHBUG00000016192	prpf8	98	97.509	Haplochromis_burtoni
ENSELUG00000007120	prpf8	99	96.547	ENSHGLG00000012029	PRPF8	98	96.547	Heterocephalus_glaber_female
ENSELUG00000007120	prpf8	99	96.547	ENSHGLG00100016494	PRPF8	98	96.547	Heterocephalus_glaber_male
ENSELUG00000007120	prpf8	99	97.597	ENSHCOG00000016414	prpf8	98	97.597	Hippocampus_comes
ENSELUG00000007120	prpf8	99	97.640	ENSIPUG00000023230	prpf8	98	97.640	Ictalurus_punctatus
ENSELUG00000007120	prpf8	99	96.547	ENSSTOG00000005128	PRPF8	98	96.547	Ictidomys_tridecemlineatus
ENSELUG00000007120	prpf8	99	94.362	ENSJJAG00000021159	Prpf8	98	94.187	Jaculus_jaculus
ENSELUG00000007120	prpf8	99	97.718	ENSKMAG00000016118	prpf8	97	97.718	Kryptolebias_marmoratus
ENSELUG00000007120	prpf8	99	97.858	ENSLBEG00000026903	prpf8	98	97.858	Labrus_bergylta
ENSELUG00000007120	prpf8	97	95.537	ENSLACG00000010479	PRPF8	100	98.165	Latimeria_chalumnae
ENSELUG00000007120	prpf8	99	97.466	ENSLOCG00000005409	prpf8	98	97.466	Lepisosteus_oculatus
ENSELUG00000007120	prpf8	99	96.547	ENSLAFG00000015445	PRPF8	98	96.547	Loxodonta_africana
ENSELUG00000007120	prpf8	99	96.547	ENSMFAG00000039995	PRPF8	98	96.547	Macaca_fascicularis
ENSELUG00000007120	prpf8	99	96.547	ENSMMUG00000004820	PRPF8	98	96.547	Macaca_mulatta
ENSELUG00000007120	prpf8	99	96.547	ENSMNEG00000035713	PRPF8	98	96.547	Macaca_nemestrina
ENSELUG00000007120	prpf8	99	96.547	ENSMLEG00000037937	PRPF8	98	96.547	Mandrillus_leucophaeus
ENSELUG00000007120	prpf8	99	97.815	ENSMAMG00000008919	prpf8	98	97.815	Mastacembelus_armatus
ENSELUG00000007120	prpf8	99	97.261	ENSMZEG00005015073	prpf8	98	97.261	Maylandia_zebra
ENSELUG00000007120	prpf8	99	96.591	ENSMGAG00000004769	PRPF8	98	96.591	Meleagris_gallopavo
ENSELUG00000007120	prpf8	99	96.547	ENSMICG00000010320	PRPF8	99	95.950	Microcebus_murinus
ENSELUG00000007120	prpf8	99	96.547	ENSMOCG00000016838	Prpf8	98	96.547	Microtus_ochrogaster
ENSELUG00000007120	prpf8	99	97.509	ENSMMOG00000011887	prpf8	98	97.509	Mola_mola
ENSELUG00000007120	prpf8	99	96.460	ENSMODG00000010480	PRPF8	98	96.460	Monodelphis_domestica
ENSELUG00000007120	prpf8	96	96.203	ENSMALG00000003558	prpf8	98	96.203	Monopterus_albus
ENSELUG00000007120	prpf8	99	96.503	MGP_CAROLIEiJ_G0016740	Prpf8	98	96.503	Mus_caroli
ENSELUG00000007120	prpf8	99	96.503	ENSMUSG00000020850	Prpf8	98	96.503	Mus_musculus
ENSELUG00000007120	prpf8	99	96.460	MGP_PahariEiJ_G0017877	Prpf8	98	96.460	Mus_pahari
ENSELUG00000007120	prpf8	99	96.503	MGP_SPRETEiJ_G0017583	Prpf8	98	96.503	Mus_spretus
ENSELUG00000007120	prpf8	99	96.547	ENSMPUG00000013227	PRPF8	98	96.547	Mustela_putorius_furo
ENSELUG00000007120	prpf8	99	96.419	ENSMLUG00000002666	PRPF8	98	96.419	Myotis_lucifugus
ENSELUG00000007120	prpf8	99	94.799	ENSNGAG00000005305	Prpf8	98	94.624	Nannospalax_galili
ENSELUG00000007120	prpf8	99	97.304	ENSNBRG00000013127	prpf8	98	97.304	Neolamprologus_brichardi
ENSELUG00000007120	prpf8	96	95.627	ENSNLEG00000000897	PRPF8	96	95.627	Nomascus_leucogenys
ENSELUG00000007120	prpf8	98	95.024	ENSMEUG00000015999	PRPF8	98	95.024	Notamacropus_eugenii
ENSELUG00000007120	prpf8	99	94.755	ENSOPRG00000003102	PRPF8	98	94.755	Ochotona_princeps
ENSELUG00000007120	prpf8	99	96.547	ENSODEG00000008468	PRPF8	98	96.547	Octodon_degus
ENSELUG00000007120	prpf8	99	97.261	ENSONIG00000008153	prpf8	98	97.261	Oreochromis_niloticus
ENSELUG00000007120	prpf8	81	97.160	ENSOANG00000004250	PRPF8	95	97.160	Ornithorhynchus_anatinus
ENSELUG00000007120	prpf8	99	96.547	ENSOCUG00000000081	PRPF8	98	96.547	Oryctolagus_cuniculus
ENSELUG00000007120	prpf8	99	97.632	ENSORLG00000008036	prpf8	98	96.918	Oryzias_latipes
ENSELUG00000007120	prpf8	99	96.876	ENSORLG00020021070	prpf8	98	96.876	Oryzias_latipes_hni
ENSELUG00000007120	prpf8	99	96.918	ENSORLG00015002340	prpf8	98	96.918	Oryzias_latipes_hsok
ENSELUG00000007120	prpf8	99	95.312	ENSOMEG00000016866	prpf8	98	95.312	Oryzias_melastigma
ENSELUG00000007120	prpf8	99	96.421	ENSOARG00000013312	PRPF8	98	96.421	Ovis_aries
ENSELUG00000007120	prpf8	99	96.547	ENSPPAG00000042753	PRPF8	98	96.547	Pan_paniscus
ENSELUG00000007120	prpf8	99	96.547	ENSPPRG00000008746	PRPF8	98	96.547	Panthera_pardus
ENSELUG00000007120	prpf8	99	96.460	ENSPTIG00000019200	PRPF8	98	96.460	Panthera_tigris_altaica
ENSELUG00000007120	prpf8	99	96.547	ENSPTRG00000039576	PRPF8	98	96.547	Pan_troglodytes
ENSELUG00000007120	prpf8	98	96.980	ENSPANG00000024607	PRPF8	96	96.980	Papio_anubis
ENSELUG00000007120	prpf8	99	97.343	ENSPKIG00000011201	prpf8	98	97.343	Paramormyrops_kingsleyae
ENSELUG00000007120	prpf8	99	96.460	ENSPSIG00000013393	PRPF8	98	96.460	Pelodiscus_sinensis
ENSELUG00000007120	prpf8	99	96.547	ENSPEMG00000021699	Prpf8	98	96.547	Peromyscus_maniculatus_bairdii
ENSELUG00000007120	prpf8	95	92.574	ENSPMAG00000005438	prpf8	98	92.620	Petromyzon_marinus
ENSELUG00000007120	prpf8	99	96.460	ENSPCIG00000022603	PRPF8	98	96.851	Phascolarctos_cinereus
ENSELUG00000007120	prpf8	99	96.794	ENSPFOG00000007005	prpf8	98	96.750	Poecilia_formosa
ENSELUG00000007120	prpf8	99	95.979	ENSPLAG00000020777	prpf8	98	95.979	Poecilia_latipinna
ENSELUG00000007120	prpf8	99	96.794	ENSPMEG00000004051	prpf8	98	96.750	Poecilia_mexicana
ENSELUG00000007120	prpf8	99	97.378	ENSPREG00000021902	prpf8	98	97.378	Poecilia_reticulata
ENSELUG00000007120	prpf8	99	96.547	ENSPPYG00000007777	PRPF8	98	96.547	Pongo_abelii
ENSELUG00000007120	prpf8	89	95.428	ENSPCAG00000008938	PRPF8	88	94.959	Procavia_capensis
ENSELUG00000007120	prpf8	99	96.547	ENSPCOG00000015182	PRPF8	98	96.547	Propithecus_coquereli
ENSELUG00000007120	prpf8	92	98.392	ENSPVAG00000002134	PRPF8	90	98.392	Pteropus_vampyrus
ENSELUG00000007120	prpf8	99	97.509	ENSPNYG00000016356	prpf8	98	97.509	Pundamilia_nyererei
ENSELUG00000007120	prpf8	99	97.684	ENSPNAG00000009247	prpf8	98	97.684	Pygocentrus_nattereri
ENSELUG00000007120	prpf8	99	96.503	ENSRNOG00000003495	Prpf8	98	96.503	Rattus_norvegicus
ENSELUG00000007120	prpf8	99	96.547	ENSRBIG00000031219	PRPF8	98	96.547	Rhinopithecus_bieti
ENSELUG00000007120	prpf8	99	96.547	ENSRROG00000038014	PRPF8	98	96.547	Rhinopithecus_roxellana
ENSELUG00000007120	prpf8	98	62.275	YHR165C	PRP8	94	62.363	Saccharomyces_cerevisiae
ENSELUG00000007120	prpf8	99	96.547	ENSSBOG00000029717	PRPF8	98	96.547	Saimiri_boliviensis_boliviensis
ENSELUG00000007120	prpf8	99	96.460	ENSSHAG00000006167	PRPF8	98	96.460	Sarcophilus_harrisii
ENSELUG00000007120	prpf8	99	97.513	ENSSFOG00015013905	prpf8	98	97.513	Scleropages_formosus
ENSELUG00000007120	prpf8	99	97.771	ENSSMAG00000017736	prpf8	98	97.771	Scophthalmus_maximus
ENSELUG00000007120	prpf8	99	97.815	ENSSDUG00000003029	prpf8	98	97.815	Seriola_dumerili
ENSELUG00000007120	prpf8	67	97.868	ENSSLDG00000017096	prpf8	97	97.868	Seriola_lalandi_dorsalis
ENSELUG00000007120	prpf8	86	94.277	ENSSARG00000002892	PRPF8	85	94.277	Sorex_araneus
ENSELUG00000007120	prpf8	99	96.159	ENSSPUG00000007463	PRPF8	98	96.159	Sphenodon_punctatus
ENSELUG00000007120	prpf8	99	97.247	ENSSPAG00000015639	prpf8	98	97.247	Stegastes_partitus
ENSELUG00000007120	prpf8	99	96.547	ENSSSCG00000017817	PRPF8	98	96.547	Sus_scrofa
ENSELUG00000007120	prpf8	53	98.778	ENSTGUG00000015597	-	95	98.778	Taeniopygia_guttata
ENSELUG00000007120	prpf8	99	96.591	ENSTGUG00000005648	-	98	96.591	Taeniopygia_guttata
ENSELUG00000007120	prpf8	99	97.509	ENSTRUG00000015906	prpf8	98	97.509	Takifugu_rubripes
ENSELUG00000007120	prpf8	94	97.599	ENSTNIG00000003460	prpf8	97	97.599	Tetraodon_nigroviridis
ENSELUG00000007120	prpf8	90	98.707	ENSTBEG00000006431	PRPF8	87	98.707	Tupaia_belangeri
ENSELUG00000007120	prpf8	99	96.023	ENSTTRG00000006869	PRPF8	98	96.023	Tursiops_truncatus
ENSELUG00000007120	prpf8	56	96.063	ENSUAMG00000015644	-	96	96.593	Ursus_americanus
ENSELUG00000007120	prpf8	99	96.285	ENSUMAG00000009385	PRPF8	98	96.285	Ursus_maritimus
ENSELUG00000007120	prpf8	70	97.931	ENSVPAG00000006063	-	69	97.931	Vicugna_pacos
ENSELUG00000007120	prpf8	99	96.547	ENSVVUG00000021695	PRPF8	97	96.547	Vulpes_vulpes
ENSELUG00000007120	prpf8	99	96.549	ENSXETG00000022259	prpf8	98	96.549	Xenopus_tropicalis
ENSELUG00000007120	prpf8	99	97.294	ENSXCOG00000012775	prpf8	98	97.294	Xiphophorus_couchianus
ENSELUG00000007120	prpf8	99	97.250	ENSXMAG00000008505	prpf8	98	97.250	Xiphophorus_maculatus