EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000007372 (Gene tree)
Gene ID: 105013623
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein A1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 4801 bases
Position: chrLG12:8346274-8351074
Accession: 105013623
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000030232	RRM_1	PF00076.22	2.8e-33	1	2
ENSELUP00000030232	RRM_1	PF00076.22	2.8e-33	2	2
ENSELUP00000006465	RRM_1	PF00076.22	4.8e-33	1	2
ENSELUP00000006465	RRM_1	PF00076.22	4.8e-33	2	2
ENSELUP00000030233	RRM_1	PF00076.22	5.6e-33	1	2
ENSELUP00000030233	RRM_1	PF00076.22	5.6e-33	2	2
ENSELUP00000030232	HnRNPA1	PF11627.8	6.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000008864	-	2706	XM_013136431	ENSELUP00000030233	477 (aa)	XP_012991885	-
ENSELUT00000008887	-	2637	XM_013136438	ENSELUP00000006465	454 (aa)	XP_012991892	-
ENSELUT00000008849	-	1080	-	ENSELUP00000030232	359 (aa)	-	-

Gene Model

Click here to download ENSELUG00000007372's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000007372's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000007372	-	56	37.824	ENSELUG00000023280	-	60	37.824
ENSELUG00000007372	-	51	58.427	ENSELUG00000014398	-	77	49.780
ENSELUG00000007372	-	77	87.629	ENSELUG00000020089	-	70	87.831
ENSELUG00000007372	-	54	35.814	ENSELUG00000010286	dazap1	59	36.792
ENSELUG00000007372	-	51	40.341	ENSELUG00000023219	MSI1	50	38.743
ENSELUG00000007372	-	57	59.627	ENSELUG00000014407	-	95	59.627
ENSELUG00000007372	-	92	58.912	ENSELUG00000023080	hnrnpa3	62	80.110
ENSELUG00000007372	-	77	34.043	ENSELUG00000003241	hnrnpdl	65	35.644
ENSELUG00000007372	-	50	41.860	ENSELUG00000001361	msi2b	67	46.552
ENSELUG00000007372	-	74	32.258	ENSELUG00000003230	hnrnpd	65	35.859
ENSELUG00000007372	-	65	35.052	ENSELUG00000011747	msi2a	59	41.279
ENSELUG00000007372	-	73	35.955	ENSELUG00000020765	hnrnpabb	61	37.363

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000007372	-	53	89.062	ENSAPOG00000019369	-	59	88.144	Acanthochromis_polyacanthus
ENSELUG00000007372	-	53	89.062	ENSAOCG00000005289	-	58	88.144	Amphiprion_ocellaris
ENSELUG00000007372	-	53	89.062	ENSAPEG00000004179	-	58	88.144	Amphiprion_percula
ENSELUG00000007372	-	54	89.119	ENSATEG00000022918	hnrnpa1a	92	88.205	Anabas_testudineus
ENSELUG00000007372	-	50	56.983	ENSACAG00000017109	-	55	56.983	Anolis_carolinensis
ENSELUG00000007372	-	51	90.164	ENSACLG00000006940	-	59	87.755	Astatotilapia_calliptera
ENSELUG00000007372	-	51	85.165	ENSAMXG00000006296	hnrnpa1a	51	83.598	Astyanax_mexicanus
ENSELUG00000007372	-	51	53.371	ENSCSEG00000014051	-	71	53.448	Cynoglossus_semilaevis
ENSELUG00000007372	-	51	90.110	ENSCSEG00000007589	hnrnpa1a	70	88.482	Cynoglossus_semilaevis
ENSELUG00000007372	-	52	84.409	ENSDARG00000011020	hnrnpa1a	50	82.474	Danio_rerio
ENSELUG00000007372	-	61	47.727	ENSDORG00000026425	-	53	56.757	Dipodomys_ordii
ENSELUG00000007372	-	50	59.322	ENSGMOG00000020353	-	98	58.201	Gadus_morhua
ENSELUG00000007372	-	51	86.957	ENSGMOG00000017950	hnrnpa1a	51	85.789	Gadus_morhua
ENSELUG00000007372	-	53	89.583	ENSGAFG00000007751	-	57	88.660	Gambusia_affinis
ENSELUG00000007372	-	50	52.809	ENSGAFG00000016803	-	57	52.632	Gambusia_affinis
ENSELUG00000007372	-	51	91.304	ENSGACG00000009435	-	50	89.175	Gasterosteus_aculeatus
ENSELUG00000007372	-	53	83.598	ENSIPUG00000022440	-	74	82.081	Ictalurus_punctatus
ENSELUG00000007372	-	51	87.432	ENSIPUG00000002023	hnrnpa1a	75	88.000	Ictalurus_punctatus
ENSELUG00000007372	-	51	60.452	ENSIPUG00000001991	-	87	56.098	Ictalurus_punctatus
ENSELUG00000007372	-	50	65.556	ENSJJAG00000009178	-	54	62.069	Jaculus_jaculus
ENSELUG00000007372	-	51	89.674	ENSKMAG00000020859	-	58	89.175	Kryptolebias_marmoratus
ENSELUG00000007372	-	52	89.730	ENSLBEG00000010010	hnrnpa1a	55	90.000	Labrus_bergylta
ENSELUG00000007372	-	51	70.652	ENSMFAG00000028351	-	59	67.822	Macaca_fascicularis
ENSELUG00000007372	-	54	89.119	ENSMAMG00000007606	-	56	90.476	Mastacembelus_armatus
ENSELUG00000007372	-	64	77.489	ENSMMOG00000008251	hnrnpa1a	86	83.810	Mola_mola
ENSELUG00000007372	-	50	57.955	ENSNBRG00000014469	-	87	55.263	Neolamprologus_brichardi
ENSELUG00000007372	-	51	90.164	ENSNBRG00000018441	-	59	87.755	Neolamprologus_brichardi
ENSELUG00000007372	-	51	90.710	ENSORLG00000008001	-	59	89.691	Oryzias_latipes
ENSELUG00000007372	-	50	50.568	ENSORLG00000029240	-	94	51.445	Oryzias_latipes
ENSELUG00000007372	-	50	50.568	ENSORLG00020022498	-	84	51.445	Oryzias_latipes_hni
ENSELUG00000007372	-	66	40.940	ENSORLG00020006043	-	59	52.023	Oryzias_latipes_hni
ENSELUG00000007372	-	51	90.710	ENSORLG00020006582	hnrnpa1a	89	89.474	Oryzias_latipes_hni
ENSELUG00000007372	-	51	90.164	ENSORLG00015022294	-	59	89.175	Oryzias_latipes_hsok
ENSELUG00000007372	-	91	65.854	ENSOMEG00000015959	-	59	89.175	Oryzias_melastigma
ENSELUG00000007372	-	50	57.803	ENSPMGG00000016392	-	93	57.803	Periophthalmus_magnuspinnatus
ENSELUG00000007372	-	52	88.108	ENSPMGG00000011804	hnrnpa1a	71	86.528	Periophthalmus_magnuspinnatus
ENSELUG00000007372	-	65	77.253	ENSPFOG00000001825	-	57	88.660	Poecilia_formosa
ENSELUG00000007372	-	65	77.253	ENSPMEG00000002425	-	57	88.660	Poecilia_mexicana
ENSELUG00000007372	-	50	57.955	ENSPNYG00000020729	-	95	55.556	Pundamilia_nyererei
ENSELUG00000007372	-	55	83.163	ENSPNAG00000007752	hnrnpa1a	78	83.333	Pygocentrus_nattereri
ENSELUG00000007372	-	63	73.973	ENSPNAG00000021630	-	57	81.283	Pygocentrus_nattereri
ENSELUG00000007372	-	50	57.229	ENSSMAG00000010279	-	93	57.229	Scophthalmus_maximus
ENSELUG00000007372	-	51	89.617	ENSSMAG00000004641	hnrnpa1a	63	88.601	Scophthalmus_maximus
ENSELUG00000007372	-	92	75.820	ENSSDUG00000013908	hnrnpa1a	86	91.304	Seriola_dumerili
ENSELUG00000007372	-	55	54.974	ENSSDUG00000002431	-	90	54.688	Seriola_dumerili
ENSELUG00000007372	-	72	91.257	ENSSLDG00000003718	hnrnpa1a	82	90.751	Seriola_lalandi_dorsalis
ENSELUG00000007372	-	92	62.609	ENSSPAG00000018518	-	68	87.113	Stegastes_partitus
ENSELUG00000007372	-	59	71.218	ENSTRUG00000020491	-	69	89.062	Takifugu_rubripes
ENSELUG00000007372	-	64	49.819	ENSTNIG00000007398	-	70	58.242	Tetraodon_nigroviridis
ENSELUG00000007372	-	52	89.785	ENSXCOG00000009001	-	83	89.119	Xiphophorus_couchianus
ENSELUG00000007372	-	53	89.583	ENSXMAG00000008076	-	57	88.660	Xiphophorus_maculatus