EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000007607 (Gene tree)
Gene ID: 105015307
Gene Symbol: EDC3 (1 of many)
Alias: FLJ21128|LSM16|YJDC|YJEFN2|hYjeF_N2-15q23
Full Name: enhancer of mRNA-decapping protein 3
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 25353 bases
Position: chrLG02:19764326-19789678
Accession: 105015307
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000006746	FDF	PF09532.10	5e-09	1	1
ENSELUP00000006752	FDF	PF09532.10	5e-09	1	1
ENSELUP00000006746	LSM14	PF12701.7	1.1e-09	1	1
ENSELUP00000006752	LSM14	PF12701.7	1.1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000008407	EDC3 (1 of many)-202	6507	XM_010878376	ENSELUP00000006746	470 (aa)	XP_010876678	UPI0005774646
ENSELUT00000008398	EDC3 (1 of many)-201	6465	XM_010878384	ENSELUP00000006752	470 (aa)	XP_010876686	UPI0005774646

Gene Model

Click here to download ENSELUG00000007607's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000007607's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000007607	EDC3	100	69.647	ENSELUG00000005794	edc3	100	69.647

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000007607	EDC3	100	61.840	ENSG00000179151	EDC3	100	75.926	Homo_sapiens
ENSELUG00000007607	EDC3	100	72.083	ENSAPOG00000010791	edc3	100	72.083	Acanthochromis_polyacanthus
ENSELUG00000007607	EDC3	100	62.551	ENSAPOG00000008655	EDC3	100	62.551	Acanthochromis_polyacanthus
ENSELUG00000007607	EDC3	100	61.644	ENSAMEG00000008963	EDC3	100	61.644	Ailuropoda_melanoleuca
ENSELUG00000007607	EDC3	99	65.863	ENSACIG00000005330	EDC3	99	66.064	Amphilophus_citrinellus
ENSELUG00000007607	EDC3	100	71.042	ENSACIG00000017751	edc3	100	71.042	Amphilophus_citrinellus
ENSELUG00000007607	EDC3	100	68.908	ENSAOCG00000009103	-	100	68.908	Amphiprion_ocellaris
ENSELUG00000007607	EDC3	100	72.292	ENSAOCG00000005431	edc3	100	72.292	Amphiprion_ocellaris
ENSELUG00000007607	EDC3	100	69.118	ENSAPEG00000007841	EDC3	100	69.118	Amphiprion_percula
ENSELUG00000007607	EDC3	100	72.292	ENSAPEG00000000968	edc3	100	72.292	Amphiprion_percula
ENSELUG00000007607	EDC3	100	72.292	ENSATEG00000015505	edc3	100	72.292	Anabas_testudineus
ENSELUG00000007607	EDC3	100	69.456	ENSATEG00000004205	-	100	69.456	Anabas_testudineus
ENSELUG00000007607	EDC3	89	61.404	ENSAPLG00000008957	EDC3	100	61.404	Anas_platyrhynchos
ENSELUG00000007607	EDC3	76	59.750	ENSACAG00000000460	-	100	59.750	Anolis_carolinensis
ENSELUG00000007607	EDC3	100	62.231	ENSANAG00000024078	EDC3	100	62.231	Aotus_nancymaae
ENSELUG00000007607	EDC3	100	67.585	ENSACLG00000018776	-	100	67.585	Astatotilapia_calliptera
ENSELUG00000007607	EDC3	100	71.250	ENSACLG00000007232	edc3	100	71.250	Astatotilapia_calliptera
ENSELUG00000007607	EDC3	100	69.608	ENSAMXG00000001589	edc3	100	69.608	Astyanax_mexicanus
ENSELUG00000007607	EDC3	100	62.840	ENSBTAG00000007308	EDC3	100	62.840	Bos_taurus
ENSELUG00000007607	EDC3	100	62.427	ENSCJAG00000017681	EDC3	100	62.427	Callithrix_jacchus
ENSELUG00000007607	EDC3	100	61.673	ENSCAFG00000017935	EDC3	100	61.644	Canis_familiaris
ENSELUG00000007607	EDC3	100	61.673	ENSCAFG00020003909	EDC3	100	61.644	Canis_lupus_dingo
ENSELUG00000007607	EDC3	100	62.840	ENSCHIG00000023658	EDC3	100	62.840	Capra_hircus
ENSELUG00000007607	EDC3	100	62.162	ENSTSYG00000004822	EDC3	100	62.622	Carlito_syrichta
ENSELUG00000007607	EDC3	100	62.231	ENSCPOG00000015595	EDC3	100	62.231	Cavia_porcellus
ENSELUG00000007607	EDC3	100	62.427	ENSCCAG00000021663	EDC3	100	62.427	Cebus_capucinus
ENSELUG00000007607	EDC3	100	62.427	ENSCATG00000037511	EDC3	100	62.427	Cercocebus_atys
ENSELUG00000007607	EDC3	100	61.583	ENSCLAG00000005700	EDC3	100	61.583	Chinchilla_lanigera
ENSELUG00000007607	EDC3	100	62.427	ENSCSAG00000014239	EDC3	100	62.427	Chlorocebus_sabaeus
ENSELUG00000007607	EDC3	100	63.281	ENSCPBG00000024239	EDC3	100	63.281	Chrysemys_picta_bellii
ENSELUG00000007607	EDC3	100	37.791	ENSCING00000022142	-	99	37.791	Ciona_intestinalis
ENSELUG00000007607	EDC3	100	62.427	ENSCANG00000028699	EDC3	100	62.427	Colobus_angolensis_palliatus
ENSELUG00000007607	EDC3	100	61.840	ENSCGRG00001013874	Edc3	100	62.427	Cricetulus_griseus_chok1gshd
ENSELUG00000007607	EDC3	100	61.840	ENSCGRG00000011885	Edc3	100	62.427	Cricetulus_griseus_crigri
ENSELUG00000007607	EDC3	99	70.564	ENSCSEG00000012996	edc3	99	70.564	Cynoglossus_semilaevis
ENSELUG00000007607	EDC3	100	70.981	ENSCVAG00000008023	edc3	100	70.981	Cyprinodon_variegatus
ENSELUG00000007607	EDC3	99	67.255	ENSDARG00000051931	edc3	99	67.383	Danio_rerio
ENSELUG00000007607	EDC3	100	54.440	ENSDNOG00000030661	EDC3	100	54.440	Dasypus_novemcinctus
ENSELUG00000007607	EDC3	70	75.926	ENSETEG00000002398	-	64	75.926	Echinops_telfairi
ENSELUG00000007607	EDC3	100	62.062	ENSEASG00005005071	EDC3	100	62.062	Equus_asinus_asinus
ENSELUG00000007607	EDC3	100	62.062	ENSECAG00000017994	EDC3	100	62.062	Equus_caballus
ENSELUG00000007607	EDC3	100	62.451	ENSFCAG00000002014	EDC3	100	62.451	Felis_catus
ENSELUG00000007607	EDC3	98	61.677	ENSFALG00000004543	EDC3	96	61.677	Ficedula_albicollis
ENSELUG00000007607	EDC3	100	61.748	ENSFDAG00000012582	EDC3	100	61.748	Fukomys_damarensis
ENSELUG00000007607	EDC3	100	71.042	ENSFHEG00000009375	edc3	100	71.042	Fundulus_heteroclitus
ENSELUG00000007607	EDC3	100	71.811	ENSGMOG00000002715	edc3	100	72.671	Gadus_morhua
ENSELUG00000007607	EDC3	100	62.868	ENSGALG00000040181	EDC3	100	62.868	Gallus_gallus
ENSELUG00000007607	EDC3	100	70.625	ENSGAFG00000014433	edc3	100	70.625	Gambusia_affinis
ENSELUG00000007607	EDC3	99	62.549	ENSGACG00000014671	EDC3	99	63.529	Gasterosteus_aculeatus
ENSELUG00000007607	EDC3	100	70.833	ENSGACG00000009783	edc3	100	70.833	Gasterosteus_aculeatus
ENSELUG00000007607	EDC3	100	62.573	ENSGAGG00000023477	EDC3	100	62.573	Gopherus_agassizii
ENSELUG00000007607	EDC3	100	61.840	ENSGGOG00000003552	EDC3	100	61.840	Gorilla_gorilla
ENSELUG00000007607	EDC3	100	71.250	ENSHBUG00000003635	edc3	100	71.250	Haplochromis_burtoni
ENSELUG00000007607	EDC3	100	67.585	ENSHBUG00000020817	EDC3	100	67.585	Haplochromis_burtoni
ENSELUG00000007607	EDC3	100	69.087	ENSHCOG00000016834	edc3	100	69.087	Hippocampus_comes
ENSELUG00000007607	EDC3	99	68.056	ENSIPUG00000005695	edc3	100	68.056	Ictalurus_punctatus
ENSELUG00000007607	EDC3	100	62.427	ENSSTOG00000013936	EDC3	100	62.427	Ictidomys_tridecemlineatus
ENSELUG00000007607	EDC3	100	63.035	ENSJJAG00000008074	Edc3	100	63.035	Jaculus_jaculus
ENSELUG00000007607	EDC3	100	66.736	ENSKMAG00000001987	EDC3	100	66.736	Kryptolebias_marmoratus
ENSELUG00000007607	EDC3	100	69.647	ENSKMAG00000001243	edc3	100	69.647	Kryptolebias_marmoratus
ENSELUG00000007607	EDC3	100	68.058	ENSLBEG00000017984	EDC3	100	68.058	Labrus_bergylta
ENSELUG00000007607	EDC3	100	71.042	ENSLBEG00000013435	edc3	99	71.042	Labrus_bergylta
ENSELUG00000007607	EDC3	100	64.023	ENSLACG00000014149	EDC3	100	64.023	Latimeria_chalumnae
ENSELUG00000007607	EDC3	99	63.911	ENSLOCG00000014625	edc3	99	63.405	Lepisosteus_oculatus
ENSELUG00000007607	EDC3	100	62.183	ENSLAFG00000002992	EDC3	100	62.183	Loxodonta_africana
ENSELUG00000007607	EDC3	100	62.818	ENSMFAG00000043074	EDC3	100	62.818	Macaca_fascicularis
ENSELUG00000007607	EDC3	100	62.818	ENSMMUG00000011071	EDC3	100	62.818	Macaca_mulatta
ENSELUG00000007607	EDC3	100	62.818	ENSMNEG00000035316	EDC3	100	62.818	Macaca_nemestrina
ENSELUG00000007607	EDC3	100	62.427	ENSMLEG00000030372	EDC3	100	62.427	Mandrillus_leucophaeus
ENSELUG00000007607	EDC3	100	70.833	ENSMAMG00000000505	edc3	100	70.833	Mastacembelus_armatus
ENSELUG00000007607	EDC3	99	68.076	ENSMAMG00000005423	-	99	68.076	Mastacembelus_armatus
ENSELUG00000007607	EDC3	100	71.250	ENSMZEG00005004892	edc3	100	71.250	Maylandia_zebra
ENSELUG00000007607	EDC3	100	67.288	ENSMZEG00005005654	EDC3	100	67.288	Maylandia_zebra
ENSELUG00000007607	EDC3	100	62.279	ENSMGAG00000002617	EDC3	100	62.279	Meleagris_gallopavo
ENSELUG00000007607	EDC3	100	62.646	ENSMICG00000043190	EDC3	100	62.646	Microcebus_murinus
ENSELUG00000007607	EDC3	100	62.231	ENSMOCG00000016205	Edc3	100	62.231	Microtus_ochrogaster
ENSELUG00000007607	EDC3	99	72.443	ENSMMOG00000012278	edc3	99	72.443	Mola_mola
ENSELUG00000007607	EDC3	100	63.281	ENSMODG00000009442	EDC3	100	63.281	Monodelphis_domestica
ENSELUG00000007607	EDC3	100	72.292	ENSMALG00000008658	edc3	100	72.292	Monopterus_albus
ENSELUG00000007607	EDC3	100	62.035	MGP_CAROLIEiJ_G0032280	Edc3	100	73.846	Mus_caroli
ENSELUG00000007607	EDC3	100	62.231	ENSMUSG00000038957	Edc3	100	73.846	Mus_musculus
ENSELUG00000007607	EDC3	100	62.035	MGP_PahariEiJ_G0015146	Edc3	100	73.846	Mus_pahari
ENSELUG00000007607	EDC3	100	62.427	MGP_SPRETEiJ_G0033420	Edc3	100	73.846	Mus_spretus
ENSELUG00000007607	EDC3	100	62.257	ENSMPUG00000017293	EDC3	100	62.257	Mustela_putorius_furo
ENSELUG00000007607	EDC3	100	62.791	ENSMLUG00000016382	EDC3	100	62.791	Myotis_lucifugus
ENSELUG00000007607	EDC3	100	61.448	ENSNGAG00000010923	Edc3	100	61.448	Nannospalax_galili
ENSELUG00000007607	EDC3	100	66.804	ENSNBRG00000007881	EDC3	100	66.804	Neolamprologus_brichardi
ENSELUG00000007607	EDC3	100	71.042	ENSNBRG00000002434	edc3	100	71.042	Neolamprologus_brichardi
ENSELUG00000007607	EDC3	100	53.229	ENSNLEG00000014577	EDC3	100	53.229	Nomascus_leucogenys
ENSELUG00000007607	EDC3	100	62.695	ENSMEUG00000009077	EDC3	100	62.695	Notamacropus_eugenii
ENSELUG00000007607	EDC3	85	75.926	ENSOPRG00000009540	-	79	75.926	Ochotona_princeps
ENSELUG00000007607	EDC3	100	62.548	ENSONIG00000002932	-	100	62.548	Oreochromis_niloticus
ENSELUG00000007607	EDC3	100	71.250	ENSONIG00000008434	edc3	100	71.250	Oreochromis_niloticus
ENSELUG00000007607	EDC3	76	59.453	ENSOCUG00000017740	EDC3	86	59.453	Oryctolagus_cuniculus
ENSELUG00000007607	EDC3	100	65.828	ENSORLG00000014399	-	98	65.828	Oryzias_latipes
ENSELUG00000007607	EDC3	100	70.062	ENSORLG00000004883	edc3	100	70.062	Oryzias_latipes
ENSELUG00000007607	EDC3	100	66.247	ENSORLG00020019446	-	100	66.247	Oryzias_latipes_hni
ENSELUG00000007607	EDC3	100	70.062	ENSORLG00020012262	edc3	100	70.062	Oryzias_latipes_hni
ENSELUG00000007607	EDC3	100	70.062	ENSORLG00015005634	edc3	100	70.062	Oryzias_latipes_hsok
ENSELUG00000007607	EDC3	100	65.546	ENSORLG00015017635	-	96	65.546	Oryzias_latipes_hsok
ENSELUG00000007607	EDC3	100	71.667	ENSOMEG00000014026	edc3	100	71.667	Oryzias_melastigma
ENSELUG00000007607	EDC3	100	65.966	ENSOMEG00000017354	EDC3	100	65.966	Oryzias_melastigma
ENSELUG00000007607	EDC3	100	62.622	ENSOGAG00000014441	EDC3	100	63.014	Otolemur_garnettii
ENSELUG00000007607	EDC3	100	62.718	ENSOARG00000003476	EDC3	100	62.524	Ovis_aries
ENSELUG00000007607	EDC3	100	61.840	ENSPPAG00000040143	EDC3	100	61.840	Pan_paniscus
ENSELUG00000007607	EDC3	100	62.257	ENSPPRG00000006257	EDC3	100	62.257	Panthera_pardus
ENSELUG00000007607	EDC3	100	62.257	ENSPTIG00000017424	EDC3	100	62.257	Panthera_tigris_altaica
ENSELUG00000007607	EDC3	100	61.840	ENSPTRG00000007279	EDC3	100	61.840	Pan_troglodytes
ENSELUG00000007607	EDC3	100	62.427	ENSPANG00000015997	EDC3	100	62.427	Papio_anubis
ENSELUG00000007607	EDC3	100	64.188	ENSPKIG00000019810	EDC3	100	64.188	Paramormyrops_kingsleyae
ENSELUG00000007607	EDC3	100	66.929	ENSPKIG00000004416	edc3	100	68.039	Paramormyrops_kingsleyae
ENSELUG00000007607	EDC3	100	58.398	ENSPSIG00000008474	EDC3	100	59.375	Pelodiscus_sinensis
ENSELUG00000007607	EDC3	100	69.792	ENSPMGG00000007223	edc3	100	69.792	Periophthalmus_magnuspinnatus
ENSELUG00000007607	EDC3	100	62.524	ENSPEMG00000015260	Edc3	100	62.524	Peromyscus_maniculatus_bairdii
ENSELUG00000007607	EDC3	100	62.279	ENSPCIG00000006276	EDC3	70	62.402	Phascolarctos_cinereus
ENSELUG00000007607	EDC3	100	71.458	ENSPFOG00000012204	edc3	100	71.458	Poecilia_formosa
ENSELUG00000007607	EDC3	100	71.458	ENSPLAG00000014420	edc3	100	71.458	Poecilia_latipinna
ENSELUG00000007607	EDC3	100	71.458	ENSPMEG00000023289	edc3	100	71.458	Poecilia_mexicana
ENSELUG00000007607	EDC3	100	70.833	ENSPREG00000016022	edc3	100	70.833	Poecilia_reticulata
ENSELUG00000007607	EDC3	100	61.057	ENSPPYG00000006642	EDC3	100	61.057	Pongo_abelii
ENSELUG00000007607	EDC3	85	75.926	ENSPCAG00000002802	EDC3	79	75.926	Procavia_capensis
ENSELUG00000007607	EDC3	100	62.818	ENSPCOG00000013364	EDC3	100	62.818	Propithecus_coquereli
ENSELUG00000007607	EDC3	88	74.212	ENSPVAG00000014733	EDC3	100	62.355	Pteropus_vampyrus
ENSELUG00000007607	EDC3	100	67.585	ENSPNYG00000009669	EDC3	100	67.585	Pundamilia_nyererei
ENSELUG00000007607	EDC3	100	71.250	ENSPNYG00000021797	edc3	100	71.250	Pundamilia_nyererei
ENSELUG00000007607	EDC3	100	69.216	ENSPNAG00000019657	edc3	100	69.216	Pygocentrus_nattereri
ENSELUG00000007607	EDC3	99	62.008	ENSRNOG00000019579	Edc3	99	62.402	Rattus_norvegicus
ENSELUG00000007607	EDC3	100	62.109	ENSRBIG00000019488	EDC3	100	62.109	Rhinopithecus_bieti
ENSELUG00000007607	EDC3	100	62.109	ENSRROG00000034959	EDC3	100	62.109	Rhinopithecus_roxellana
ENSELUG00000007607	EDC3	100	62.427	ENSSBOG00000004896	EDC3	100	62.840	Saimiri_boliviensis_boliviensis
ENSELUG00000007607	EDC3	96	61.429	ENSSHAG00000015075	EDC3	95	61.429	Sarcophilus_harrisii
ENSELUG00000007607	EDC3	100	72.537	ENSSFOG00015002439	edc3	100	72.537	Scleropages_formosus
ENSELUG00000007607	EDC3	100	68.515	ENSSFOG00015016939	edc3	100	68.288	Scleropages_formosus
ENSELUG00000007607	EDC3	99	69.328	ENSSMAG00000010176	-	99	69.328	Scophthalmus_maximus
ENSELUG00000007607	EDC3	100	70.833	ENSSMAG00000010695	edc3	100	70.833	Scophthalmus_maximus
ENSELUG00000007607	EDC3	100	72.292	ENSSDUG00000021844	edc3	100	72.917	Seriola_dumerili
ENSELUG00000007607	EDC3	100	70.921	ENSSDUG00000007671	EDC3	100	70.921	Seriola_dumerili
ENSELUG00000007607	EDC3	100	72.500	ENSSLDG00000022046	edc3	100	73.125	Seriola_lalandi_dorsalis
ENSELUG00000007607	EDC3	67	77.823	ENSSARG00000003907	EDC3	62	77.823	Sorex_araneus
ENSELUG00000007607	EDC3	100	62.035	ENSSPUG00000008232	EDC3	100	62.035	Sphenodon_punctatus
ENSELUG00000007607	EDC3	100	72.292	ENSSPAG00000010009	edc3	100	72.292	Stegastes_partitus
ENSELUG00000007607	EDC3	100	69.247	ENSSPAG00000020327	EDC3	100	69.247	Stegastes_partitus
ENSELUG00000007607	EDC3	100	64.826	ENSSSCG00000001903	EDC3	100	64.826	Sus_scrofa
ENSELUG00000007607	EDC3	100	62.549	ENSTGUG00000004007	EDC3	100	62.549	Taeniopygia_guttata
ENSELUG00000007607	EDC3	100	71.218	ENSTRUG00000017078	edc3	100	71.218	Takifugu_rubripes
ENSELUG00000007607	EDC3	100	70.539	ENSTNIG00000016047	edc3	100	70.539	Tetraodon_nigroviridis
ENSELUG00000007607	EDC3	100	63.086	ENSTTRG00000007990	EDC3	100	63.086	Tursiops_truncatus
ENSELUG00000007607	EDC3	100	61.644	ENSUAMG00000026710	-	100	61.644	Ursus_americanus
ENSELUG00000007607	EDC3	100	61.644	ENSUMAG00000005006	EDC3	96	61.644	Ursus_maritimus
ENSELUG00000007607	EDC3	85	66.667	ENSVPAG00000003499	-	79	66.667	Vicugna_pacos
ENSELUG00000007607	EDC3	100	62.062	ENSVVUG00000018601	EDC3	100	62.062	Vulpes_vulpes
ENSELUG00000007607	EDC3	74	70.370	ENSXETG00000010622	edc3	99	71.795	Xenopus_tropicalis
ENSELUG00000007607	EDC3	100	71.042	ENSXMAG00000007377	edc3	100	71.042	Xiphophorus_maculatus