EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000007714 (Gene tree)
Gene ID: 105007118
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 9437 bases
Position: chrLG24:4619148-4628584
Accession: 105007118
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000006877	RRM_1	PF00076.22	1.9e-13	1	1
ENSELUP00000006850	RRM_1	PF00076.22	2.3e-13	1	1
ENSELUP00000006863	RRM_1	PF00076.22	2.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000008228	-	1100	XM_010865926	ENSELUP00000006850	292 (aa)	XP_010864228	-
ENSELUT00000008211	-	1134	XM_010865924	ENSELUP00000006863	292 (aa)	XP_010864226	-
ENSELUT00000008193	-	840	-	ENSELUP00000006877	279 (aa)	-	-

Gene Model

Click here to download ENSELUG00000007714's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000007714's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000007714	-	78	53.556	ENSELUG00000001702	-	88	51.230
ENSELUG00000007714	-	93	79.004	ENSELUG00000004132	-	85	78.810
ENSELUG00000007714	-	96	42.424	ENSELUG00000011138	raly	75	50.885

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000007714	-	96	48.727	ENSG00000184672	RALYL	91	77.922	Homo_sapiens
ENSELUG00000007714	-	88	82.625	ENSAPOG00000006963	hnrnpc	79	83.012	Acanthochromis_polyacanthus
ENSELUG00000007714	-	99	71.378	ENSACIG00000016568	-	83	81.277	Amphilophus_citrinellus
ENSELUG00000007714	-	90	77.528	ENSACIG00000000270	-	83	83.621	Amphilophus_citrinellus
ENSELUG00000007714	-	99	67.003	ENSAOCG00000021616	-	99	68.350	Amphiprion_ocellaris
ENSELUG00000007714	-	88	82.625	ENSAOCG00000003896	-	79	83.012	Amphiprion_ocellaris
ENSELUG00000007714	-	99	70.000	ENSAPEG00000019962	-	80	80.377	Amphiprion_percula
ENSELUG00000007714	-	88	82.625	ENSAPEG00000001489	-	79	83.012	Amphiprion_percula
ENSELUG00000007714	-	93	77.617	ENSATEG00000018006	-	79	83.478	Anabas_testudineus
ENSELUG00000007714	-	88	78.462	ENSATEG00000011734	-	79	81.538	Anabas_testudineus
ENSELUG00000007714	-	80	49.187	ENSAPLG00000015574	RALYL	79	50.813	Anas_platyrhynchos
ENSELUG00000007714	-	80	48.374	ENSACAG00000028464	RALYL	81	50.820	Anolis_carolinensis
ENSELUG00000007714	-	96	48.364	ENSANAG00000023383	RALYL	80	54.741	Aotus_nancymaae
ENSELUG00000007714	-	93	76.534	ENSACLG00000005707	-	86	80.074	Astatotilapia_calliptera
ENSELUG00000007714	-	88	82.625	ENSACLG00000000995	-	81	84.475	Astatotilapia_calliptera
ENSELUG00000007714	-	89	82.197	ENSACLG00000013636	-	85	82.222	Astatotilapia_calliptera
ENSELUG00000007714	-	75	71.689	ENSAMXG00000042946	hnrnpc	97	72.906	Astyanax_mexicanus
ENSELUG00000007714	-	90	76.718	ENSAMXG00000034915	zgc:55733	88	76.336	Astyanax_mexicanus
ENSELUG00000007714	-	96	48.364	ENSCJAG00000000402	RALYL	80	53.680	Callithrix_jacchus
ENSELUG00000007714	-	96	45.993	ENSCPOG00000012314	RALYL	81	51.852	Cavia_porcellus
ENSELUG00000007714	-	96	48.364	ENSCCAG00000025003	RALYL	75	77.922	Cebus_capucinus
ENSELUG00000007714	-	96	48.727	ENSCATG00000042145	RALYL	80	55.172	Cercocebus_atys
ENSELUG00000007714	-	96	44.948	ENSCLAG00000005228	RALYL	81	51.852	Chinchilla_lanigera
ENSELUG00000007714	-	78	49.793	ENSCHOG00000013228	RALYL	77	49.378	Choloepus_hoffmanni
ENSELUG00000007714	-	96	48.727	ENSCANG00000039144	RALYL	80	55.172	Colobus_angolensis_palliatus
ENSELUG00000007714	-	97	44.898	ENSCGRG00001009241	Ralyl	81	51.639	Cricetulus_griseus_chok1gshd
ENSELUG00000007714	-	92	71.956	ENSCSEG00000021349	-	80	75.655	Cynoglossus_semilaevis
ENSELUG00000007714	-	99	61.092	ENSCSEG00000019769	-	80	68.354	Cynoglossus_semilaevis
ENSELUG00000007714	-	97	63.415	ENSCVAG00000002797	-	78	66.667	Cyprinodon_variegatus
ENSELUG00000007714	-	88	75.769	ENSCVAG00000016981	-	77	78.113	Cyprinodon_variegatus
ENSELUG00000007714	-	90	81.298	ENSDARG00000103845	zgc:55733	90	80.695	Danio_rerio
ENSELUG00000007714	-	88	74.806	ENSDARG00000053810	hnrnpc	79	74.242	Danio_rerio
ENSELUG00000007714	-	97	44.674	ENSDORG00000003721	Ralyl	84	49.430	Dipodomys_ordii
ENSELUG00000007714	-	53	57.862	ENSETEG00000014028	RALYL	84	58.434	Echinops_telfairi
ENSELUG00000007714	-	82	45.378	ENSEBUG00000006049	RALYL	79	45.378	Eptatretus_burgeri
ENSELUG00000007714	-	92	43.116	ENSEBUG00000012363	hnrnpc	69	44.635	Eptatretus_burgeri
ENSELUG00000007714	-	96	45.296	ENSEEUG00000007202	RALYL	82	52.263	Erinaceus_europaeus
ENSELUG00000007714	-	78	54.978	ENSFALG00000008647	RALYL	96	57.547	Ficedula_albicollis
ENSELUG00000007714	-	90	69.643	ENSFHEG00000007278	-	78	73.978	Fundulus_heteroclitus
ENSELUG00000007714	-	96	75.000	ENSFHEG00000003605	-	79	78.039	Fundulus_heteroclitus
ENSELUG00000007714	-	80	52.340	ENSGALG00000036938	RALYL	74	54.955	Gallus_gallus
ENSELUG00000007714	-	96	75.352	ENSGAFG00000020486	-	85	76.327	Gambusia_affinis
ENSELUG00000007714	-	99	69.965	ENSGAFG00000020992	-	99	70.979	Gambusia_affinis
ENSELUG00000007714	-	89	75.758	ENSGACG00000017772	-	93	78.125	Gasterosteus_aculeatus
ENSELUG00000007714	-	82	67.347	ENSGACG00000018932	-	90	66.109	Gasterosteus_aculeatus
ENSELUG00000007714	-	96	48.727	ENSGGOG00000000841	RALYL	80	55.172	Gorilla_gorilla
ENSELUG00000007714	-	93	76.895	ENSHBUG00000010527	-	80	80.443	Haplochromis_burtoni
ENSELUG00000007714	-	88	83.012	ENSHBUG00000018342	-	83	82.593	Haplochromis_burtoni
ENSELUG00000007714	-	96	44.599	ENSHGLG00000004866	RALYL	81	51.440	Heterocephalus_glaber_female
ENSELUG00000007714	-	96	44.599	ENSHGLG00100017480	RALYL	81	51.440	Heterocephalus_glaber_male
ENSELUG00000007714	-	93	78.182	ENSHCOG00000012333	hnrnpc	97	74.426	Hippocampus_comes
ENSELUG00000007714	-	92	76.580	ENSIPUG00000008666	zgc:55733	96	79.909	Ictalurus_punctatus
ENSELUG00000007714	-	90	73.004	ENSIPUG00000011271	hnrnpc	98	77.500	Ictalurus_punctatus
ENSELUG00000007714	-	96	44.792	ENSSTOG00000012583	RALYL	82	51.639	Ictidomys_tridecemlineatus
ENSELUG00000007714	-	97	74.476	ENSKMAG00000011170	-	78	80.545	Kryptolebias_marmoratus
ENSELUG00000007714	-	88	75.191	ENSKMAG00000018265	-	78	78.947	Kryptolebias_marmoratus
ENSELUG00000007714	-	96	74.733	ENSLBEG00000006979	-	82	75.781	Labrus_bergylta
ENSELUG00000007714	-	93	78.545	ENSLBEG00000006193	-	79	80.377	Labrus_bergylta
ENSELUG00000007714	-	100	69.307	ENSLBEG00000024418	-	79	71.595	Labrus_bergylta
ENSELUG00000007714	-	91	70.357	ENSLOCG00000002560	hnrnpc	88	68.498	Lepisosteus_oculatus
ENSELUG00000007714	-	96	48.727	ENSMNEG00000033288	RALYL	80	55.172	Macaca_nemestrina
ENSELUG00000007714	-	96	48.727	ENSMLEG00000038284	RALYL	80	55.172	Mandrillus_leucophaeus
ENSELUG00000007714	-	88	83.012	ENSMAMG00000012236	-	95	71.287	Mastacembelus_armatus
ENSELUG00000007714	-	93	76.895	ENSMAMG00000008033	-	85	79.926	Mastacembelus_armatus
ENSELUG00000007714	-	88	82.625	ENSMZEG00005020460	-	83	82.222	Maylandia_zebra
ENSELUG00000007714	-	93	76.534	ENSMZEG00005024249	-	80	80.074	Maylandia_zebra
ENSELUG00000007714	-	97	44.898	ENSMAUG00000015149	Ralyl	81	51.639	Mesocricetus_auratus
ENSELUG00000007714	-	96	47.101	ENSMICG00000005558	RALYL	78	77.922	Microcebus_murinus
ENSELUG00000007714	-	97	44.558	ENSMOCG00000017371	Ralyl	74	56.364	Microtus_ochrogaster
ENSELUG00000007714	-	91	82.222	ENSMMOG00000021465	-	88	83.083	Mola_mola
ENSELUG00000007714	-	89	75.862	ENSMMOG00000019520	-	83	82.533	Mola_mola
ENSELUG00000007714	-	89	73.077	ENSMALG00000007520	-	91	68.199	Monopterus_albus
ENSELUG00000007714	-	92	78.388	ENSMALG00000014623	-	79	79.245	Monopterus_albus
ENSELUG00000007714	-	97	44.558	ENSMUSG00000039717	Ralyl	91	76.623	Mus_musculus
ENSELUG00000007714	-	96	45.833	ENSMPUG00000010724	RALYL	81	50.820	Mustela_putorius_furo
ENSELUG00000007714	-	97	44.898	ENSNGAG00000013375	Ralyl	81	51.639	Nannospalax_galili
ENSELUG00000007714	-	99	72.281	ENSNBRG00000015676	-	80	80.443	Neolamprologus_brichardi
ENSELUG00000007714	-	89	82.576	ENSNBRG00000004912	-	94	82.432	Neolamprologus_brichardi
ENSELUG00000007714	-	96	48.727	ENSNLEG00000002702	RALYL	76	55.172	Nomascus_leucogenys
ENSELUG00000007714	-	66	46.569	ENSOPRG00000013650	-	98	49.215	Ochotona_princeps
ENSELUG00000007714	-	96	46.918	ENSODEG00000001012	RALYL	81	52.263	Octodon_degus
ENSELUG00000007714	-	88	83.784	ENSONIG00000007859	-	90	80.657	Oreochromis_niloticus
ENSELUG00000007714	-	93	76.895	ENSONIG00000018350	-	80	80.443	Oreochromis_niloticus
ENSELUG00000007714	-	88	75.093	ENSORLG00000003144	-	96	64.486	Oryzias_latipes
ENSELUG00000007714	-	88	70.498	ENSORLG00000009999	-	82	69.776	Oryzias_latipes
ENSELUG00000007714	-	88	70.115	ENSORLG00020018228	hnrnpc	82	69.403	Oryzias_latipes_hni
ENSELUG00000007714	-	88	70.498	ENSORLG00015019755	-	82	69.776	Oryzias_latipes_hsok
ENSELUG00000007714	-	88	75.093	ENSORLG00015009460	-	77	77.574	Oryzias_latipes_hsok
ENSELUG00000007714	-	88	71.648	ENSOMEG00000020488	-	81	70.896	Oryzias_melastigma
ENSELUG00000007714	-	88	77.099	ENSOMEG00000022665	-	78	79.323	Oryzias_melastigma
ENSELUG00000007714	-	96	48.727	ENSPPAG00000038705	RALYL	80	55.172	Pan_paniscus
ENSELUG00000007714	-	96	47.653	ENSPPRG00000018612	RALYL	80	54.274	Panthera_pardus
ENSELUG00000007714	-	96	47.653	ENSPTIG00000020331	RALYL	80	54.274	Panthera_tigris_altaica
ENSELUG00000007714	-	96	48.727	ENSPTRG00000020381	RALYL	80	55.172	Pan_troglodytes
ENSELUG00000007714	-	96	48.727	ENSPANG00000029305	RALYL	80	55.172	Papio_anubis
ENSELUG00000007714	-	93	79.570	ENSPKIG00000008592	-	80	80.524	Paramormyrops_kingsleyae
ENSELUG00000007714	-	91	79.044	ENSPKIG00000022837	-	96	70.261	Paramormyrops_kingsleyae
ENSELUG00000007714	-	86	47.148	ENSPSIG00000011135	RALYL	84	48.669	Pelodiscus_sinensis
ENSELUG00000007714	-	99	63.889	ENSPMGG00000017774	-	92	64.865	Periophthalmus_magnuspinnatus
ENSELUG00000007714	-	99	74.286	ENSPMGG00000013144	-	82	84.434	Periophthalmus_magnuspinnatus
ENSELUG00000007714	-	97	44.898	ENSPEMG00000016447	Ralyl	81	51.639	Peromyscus_maniculatus_bairdii
ENSELUG00000007714	-	78	50.000	ENSPMAG00000002407	RALYL	96	55.157	Petromyzon_marinus
ENSELUG00000007714	-	88	75.862	ENSPFOG00000002643	-	79	77.985	Poecilia_formosa
ENSELUG00000007714	-	96	76.140	ENSPFOG00000001583	-	81	78.491	Poecilia_formosa
ENSELUG00000007714	-	88	75.862	ENSPLAG00000000061	-	77	79.167	Poecilia_latipinna
ENSELUG00000007714	-	96	75.352	ENSPLAG00000015305	-	81	78.030	Poecilia_latipinna
ENSELUG00000007714	-	88	75.479	ENSPMEG00000016524	-	77	78.409	Poecilia_mexicana
ENSELUG00000007714	-	96	76.761	ENSPMEG00000004802	-	81	79.167	Poecilia_mexicana
ENSELUG00000007714	-	88	75.096	ENSPREG00000001852	-	94	72.391	Poecilia_reticulata
ENSELUG00000007714	-	87	78.764	ENSPREG00000007928	-	82	78.195	Poecilia_reticulata
ENSELUG00000007714	-	96	42.007	ENSPPYG00000018710	-	63	73.469	Pongo_abelii
ENSELUG00000007714	-	80	48.374	ENSPVAG00000010821	RALYL	79	50.602	Pteropus_vampyrus
ENSELUG00000007714	-	89	81.818	ENSPNYG00000020293	-	84	83.077	Pundamilia_nyererei
ENSELUG00000007714	-	99	71.777	ENSPNYG00000003747	-	86	80.443	Pundamilia_nyererei
ENSELUG00000007714	-	99	66.078	ENSPNAG00000015686	hnrnpc	85	76.604	Pygocentrus_nattereri
ENSELUG00000007714	-	91	73.034	ENSPNAG00000019200	zgc:55733	84	74.717	Pygocentrus_nattereri
ENSELUG00000007714	-	96	48.727	ENSRROG00000023925	RALYL	80	75.949	Rhinopithecus_roxellana
ENSELUG00000007714	-	90	79.104	ENSSFOG00015012924	-	81	97.500	Scleropages_formosus
ENSELUG00000007714	-	93	76.978	ENSSFOG00015012015	-	82	83.843	Scleropages_formosus
ENSELUG00000007714	-	88	76.834	ENSSMAG00000013592	-	95	69.868	Scophthalmus_maximus
ENSELUG00000007714	-	93	75.000	ENSSMAG00000011147	-	82	81.857	Scophthalmus_maximus
ENSELUG00000007714	-	96	80.919	ENSSDUG00000001723	-	83	82.593	Seriola_dumerili
ENSELUG00000007714	-	93	75.362	ENSSDUG00000006730	-	79	79.323	Seriola_dumerili
ENSELUG00000007714	-	93	75.362	ENSSLDG00000007474	-	86	79.323	Seriola_lalandi_dorsalis
ENSELUG00000007714	-	94	82.014	ENSSLDG00000007454	-	83	82.963	Seriola_lalandi_dorsalis
ENSELUG00000007714	-	69	78.022	ENSSARG00000002374	RALYL	62	63.200	Sorex_araneus
ENSELUG00000007714	-	93	76.727	ENSSPAG00000013996	-	79	80.755	Stegastes_partitus
ENSELUG00000007714	-	94	79.496	ENSSPAG00000023204	-	79	84.170	Stegastes_partitus
ENSELUG00000007714	-	81	49.597	ENSTGUG00000011689	RALYL	81	51.210	Taeniopygia_guttata
ENSELUG00000007714	-	90	73.034	ENSTRUG00000020158	-	80	76.834	Takifugu_rubripes
ENSELUG00000007714	-	90	69.925	ENSTNIG00000000334	-	89	72.266	Tetraodon_nigroviridis
ENSELUG00000007714	-	83	73.251	ENSTNIG00000007427	-	77	73.279	Tetraodon_nigroviridis
ENSELUG00000007714	-	80	45.200	ENSTBEG00000005551	RALYL	86	49.545	Tupaia_belangeri
ENSELUG00000007714	-	96	42.414	ENSTTRG00000015762	RALYL	80	49.160	Tursiops_truncatus
ENSELUG00000007714	-	96	43.841	ENSVPAG00000008501	RALYL	81	50.215	Vicugna_pacos
ENSELUG00000007714	-	94	70.968	ENSXCOG00000006552	-	74	75.000	Xiphophorus_couchianus
ENSELUG00000007714	-	54	86.957	ENSXCOG00000019434	-	80	77.228	Xiphophorus_couchianus
ENSELUG00000007714	-	96	76.056	ENSXMAG00000009333	-	78	78.824	Xiphophorus_maculatus
ENSELUG00000007714	-	88	75.676	ENSXMAG00000022849	-	92	72.054	Xiphophorus_maculatus