EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000008149 (Gene tree)
Gene ID: 105013132
Gene Symbol: -
Alias: -
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 70960 bases
Position: chrLG11:19634784-19705743
Accession: 105013132
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000030761	RRM_1	PF00076.22	0.00015	1	1
ENSELUP00000007323	RRM_1	PF00076.22	0.00016	1	1
ENSELUP00000007338	RRM_1	PF00076.22	0.00017	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000007432	-	5668	XM_013135830	ENSELUP00000007338	1837 (aa)	XP_012991284	-
ENSELUT00000007458	-	5488	-	ENSELUP00000007323	1777 (aa)	-	-
ENSELUT00000007494	-	5103	-	ENSELUP00000030761	1700 (aa)	-	-

Gene Model

Click here to download ENSELUG00000008149's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000008149's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000008149	-	94	55.306	ENSELUG00000007206	tnrc6c2	91	57.871

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000008149	-	99	79.883	ENSAOCG00000017648	tnrc6c2	83	56.532	Amphiprion_ocellaris
ENSELUG00000008149	-	94	53.892	ENSATEG00000003656	tnrc6c2	99	67.249	Anabas_testudineus
ENSELUG00000008149	-	98	80.758	ENSACLG00000006469	tnrc6c2	84	56.456	Astatotilapia_calliptera
ENSELUG00000008149	-	94	51.050	ENSAMXG00000009579	tnrc6c2	96	51.504	Astyanax_mexicanus
ENSELUG00000008149	-	99	50.423	ENSDARG00000103851	tnrc6c2	99	48.348	Danio_rerio
ENSELUG00000008149	-	92	80.864	ENSFHEG00000003901	tnrc6c2	91	80.556	Fundulus_heteroclitus
ENSELUG00000008149	-	99	50.218	ENSGACG00000019401	tnrc6c2	85	68.528	Gasterosteus_aculeatus
ENSELUG00000008149	-	98	80.758	ENSHBUG00000018310	tnrc6c2	84	56.516	Haplochromis_burtoni
ENSELUG00000008149	-	99	51.913	ENSHCOG00000017802	tnrc6c2	79	66.162	Hippocampus_comes
ENSELUG00000008149	-	94	47.721	ENSIPUG00000022767	tnrc6c2	95	45.810	Ictalurus_punctatus
ENSELUG00000008149	-	94	54.826	ENSMAMG00000001718	tnrc6c2	90	68.147	Mastacembelus_armatus
ENSELUG00000008149	-	98	80.758	ENSMZEG00005023905	tnrc6c2	84	56.516	Maylandia_zebra
ENSELUG00000008149	-	94	66.877	ENSMALG00000020932	tnrc6c2	91	67.745	Monopterus_albus
ENSELUG00000008149	-	84	67.929	ENSNBRG00000000452	tnrc6c2	95	55.918	Neolamprologus_brichardi
ENSELUG00000008149	-	79	79.883	ENSONIG00000018123	tnrc6c2	98	56.070	Oreochromis_niloticus
ENSELUG00000008149	-	100	51.584	ENSORLG00000003327	tnrc6c2	83	54.423	Oryzias_latipes
ENSELUG00000008149	-	100	51.236	ENSORLG00020010730	tnrc6c2	83	54.146	Oryzias_latipes_hni
ENSELUG00000008149	-	100	51.337	ENSORLG00015009232	tnrc6c2	83	54.146	Oryzias_latipes_hsok
ENSELUG00000008149	-	100	51.461	ENSOMEG00000017952	tnrc6c2	83	54.634	Oryzias_melastigma
ENSELUG00000008149	-	91	68.121	ENSPFOG00000011590	tnrc6c2	86	54.080	Poecilia_formosa
ENSELUG00000008149	-	83	71.693	ENSPLAG00000006992	tnrc6c2	95	58.854	Poecilia_latipinna
ENSELUG00000008149	-	83	71.693	ENSPMEG00000012946	tnrc6c2	95	58.854	Poecilia_mexicana
ENSELUG00000008149	-	83	75.281	ENSPREG00000015823	tnrc6c2	91	75.281	Poecilia_reticulata
ENSELUG00000008149	-	88	81.050	ENSPNYG00000002582	tnrc6c2	96	56.204	Pundamilia_nyererei
ENSELUG00000008149	-	94	50.703	ENSPNAG00000026838	tnrc6c2	96	50.797	Pygocentrus_nattereri
ENSELUG00000008149	-	88	72.868	ENSSMAG00000015145	tnrc6c2	91	67.318	Scophthalmus_maximus
ENSELUG00000008149	-	88	54.819	ENSSDUG00000020741	tnrc6c2	96	56.371	Seriola_dumerili
ENSELUG00000008149	-	88	54.535	ENSSLDG00000002077	tnrc6c2	96	56.068	Seriola_lalandi_dorsalis
ENSELUG00000008149	-	99	81.633	ENSSPAG00000013052	tnrc6c2	79	68.906	Stegastes_partitus
ENSELUG00000008149	-	80	71.907	ENSTNIG00000004178	tnrc6c2	93	64.333	Tetraodon_nigroviridis
ENSELUG00000008149	-	94	52.992	ENSXCOG00000013252	tnrc6c2	92	69.496	Xiphophorus_couchianus
ENSELUG00000008149	-	88	77.551	ENSXMAG00000006739	tnrc6c2	91	81.173	Xiphophorus_maculatus