EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000008230 (Gene tree)
Gene ID: 105015148
Gene Symbol: srek1
Alias: zgc:100974
Full Name: splicing regulatory glutamic acid and lysine rich protein 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 7417 bases
Position: chrLG14:19355804-19363220
Accession: 105015148
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000007465	RRM_1	PF00076.22	9.6e-20	1	1
ENSELUP00000007435	RRM_1	PF00076.22	1.1e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000007258	-	2050	-	ENSELUP00000007435	518 (aa)	-	-
ENSELUT00000007246	-	2170	XM_010878058	ENSELUP00000007465	541 (aa)	XP_010876360	UPI000578006C

Gene Model

Click here to download ENSELUG00000008230's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000008230's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000008230	srek1	93	35.714	ENSELUG00000021268	-	89	34.972
ENSELUG00000008230	srek1	53	39.446	ENSELUG00000023887	srsf11	84	35.812

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000008230	srek1	54	40.339	ENSG00000116754	SRSF11	67	67.442	Homo_sapiens
ENSELUG00000008230	srek1	60	68.362	ENSG00000153914	SREK1	85	82.353	Homo_sapiens
ENSELUG00000008230	srek1	72	75.781	ENSAPOG00000023618	srek1	97	54.825	Acanthochromis_polyacanthus
ENSELUG00000008230	srek1	54	77.891	ENSAMEG00000011327	SREK1	89	48.472	Ailuropoda_melanoleuca
ENSELUG00000008230	srek1	53	39.792	ENSAPEG00000003142	SRSF11	85	67.073	Amphiprion_percula
ENSELUG00000008230	srek1	88	55.556	ENSATEG00000009450	srek1	82	75.000	Anabas_testudineus
ENSELUG00000008230	srek1	55	77.441	ENSAPLG00000003948	-	70	76.510	Anas_platyrhynchos
ENSELUG00000008230	srek1	55	39.535	ENSACAG00000013654	SRSF11	90	38.004	Anolis_carolinensis
ENSELUG00000008230	srek1	54	40.339	ENSANAG00000018690	-	92	37.297	Aotus_nancymaae
ENSELUG00000008230	srek1	54	77.551	ENSANAG00000031358	SREK1	85	82.353	Aotus_nancymaae
ENSELUG00000008230	srek1	55	81.017	ENSACLG00000026754	srek1	96	81.017	Astatotilapia_calliptera
ENSELUG00000008230	srek1	55	80.984	ENSAMXG00000043877	srek1	59	80.000	Astyanax_mexicanus
ENSELUG00000008230	srek1	54	78.231	ENSBTAG00000007321	SREK1	85	83.529	Bos_taurus
ENSELUG00000008230	srek1	54	40.000	ENSBTAG00000015474	SRSF11	85	37.791	Bos_taurus
ENSELUG00000008230	srek1	54	77.551	ENSCJAG00000015950	SREK1	85	82.353	Callithrix_jacchus
ENSELUG00000008230	srek1	54	40.203	ENSCJAG00000017704	SRSF11	77	37.297	Callithrix_jacchus
ENSELUG00000008230	srek1	54	77.891	ENSCAFG00000007560	SREK1	86	47.097	Canis_familiaris
ENSELUG00000008230	srek1	55	38.983	ENSCHIG00000025295	SRSF11	75	65.169	Capra_hircus
ENSELUG00000008230	srek1	54	78.571	ENSTSYG00000036957	SREK1	85	83.529	Carlito_syrichta
ENSELUG00000008230	srek1	54	39.249	ENSTSYG00000033270	-	65	65.217	Carlito_syrichta
ENSELUG00000008230	srek1	54	77.365	ENSCPOG00000008925	SREK1	96	56.752	Cavia_porcellus
ENSELUG00000008230	srek1	53	38.849	ENSCPOG00000009554	SRSF11	84	36.024	Cavia_porcellus
ENSELUG00000008230	srek1	54	77.551	ENSCCAG00000020591	SREK1	85	82.353	Cebus_capucinus
ENSELUG00000008230	srek1	54	40.339	ENSCCAG00000036133	-	92	37.297	Cebus_capucinus
ENSELUG00000008230	srek1	54	40.339	ENSCATG00000043613	SRSF11	92	37.297	Cercocebus_atys
ENSELUG00000008230	srek1	54	77.551	ENSCATG00000031482	SREK1	85	82.353	Cercocebus_atys
ENSELUG00000008230	srek1	54	40.339	ENSCSAG00000001375	SRSF11	92	37.297	Chlorocebus_sabaeus
ENSELUG00000008230	srek1	54	68.367	ENSCHOG00000004956	SREK1	50	66.333	Choloepus_hoffmanni
ENSELUG00000008230	srek1	55	77.778	ENSCPBG00000026866	SREK1	85	77.778	Chrysemys_picta_bellii
ENSELUG00000008230	srek1	53	48.123	ENSCING00000022892	-	71	43.910	Ciona_intestinalis
ENSELUG00000008230	srek1	54	40.339	ENSCANG00000039796	SRSF11	92	37.297	Colobus_angolensis_palliatus
ENSELUG00000008230	srek1	54	77.551	ENSCANG00000030421	SREK1	85	82.353	Colobus_angolensis_palliatus
ENSELUG00000008230	srek1	54	38.225	ENSCGRG00001012043	Srsf11	81	38.654	Cricetulus_griseus_chok1gshd
ENSELUG00000008230	srek1	53	40.138	ENSCSEG00000010721	-	89	34.906	Cynoglossus_semilaevis
ENSELUG00000008230	srek1	97	66.414	ENSDARG00000009764	srek1	97	65.589	Danio_rerio
ENSELUG00000008230	srek1	54	39.249	ENSDNOG00000008603	SRSF11	92	34.595	Dasypus_novemcinctus
ENSELUG00000008230	srek1	54	40.000	ENSDORG00000000669	Srsf11	92	36.577	Dipodomys_ordii
ENSELUG00000008230	srek1	55	37.662	FBgn0024285	Srp54	53	37.013	Drosophila_melanogaster
ENSELUG00000008230	srek1	55	38.851	ENSEASG00005007847	SRSF11	78	65.169	Equus_asinus_asinus
ENSELUG00000008230	srek1	54	38.567	ENSEEUG00000002456	SRSF11	65	37.019	Erinaceus_europaeus
ENSELUG00000008230	srek1	53	41.176	ENSFHEG00000003732	SRSF11	88	34.942	Fundulus_heteroclitus
ENSELUG00000008230	srek1	53	39.446	ENSGACG00000009346	srsf11	98	35.382	Gasterosteus_aculeatus
ENSELUG00000008230	srek1	55	77.778	ENSGAGG00000006087	SREK1	62	88.889	Gopherus_agassizii
ENSELUG00000008230	srek1	54	40.339	ENSGGOG00000005774	SRSF11	92	37.297	Gorilla_gorilla
ENSELUG00000008230	srek1	54	77.551	ENSGGOG00000004737	SREK1	85	82.353	Gorilla_gorilla
ENSELUG00000008230	srek1	54	40.000	ENSHGLG00000008682	SRSF11	86	38.178	Heterocephalus_glaber_female
ENSELUG00000008230	srek1	54	39.932	ENSHGLG00100018382	SRSF11	89	38.039	Heterocephalus_glaber_male
ENSELUG00000008230	srek1	98	62.709	ENSIPUG00000016851	srek1	98	60.187	Ictalurus_punctatus
ENSELUG00000008230	srek1	54	40.000	ENSSTOG00000008675	SRSF11	92	37.117	Ictidomys_tridecemlineatus
ENSELUG00000008230	srek1	60	67.598	ENSSTOG00000008850	SREK1	85	83.529	Ictidomys_tridecemlineatus
ENSELUG00000008230	srek1	54	40.000	ENSJJAG00000017238	Srsf11	88	38.372	Jaculus_jaculus
ENSELUG00000008230	srek1	54	39.932	ENSLACG00000006575	SRSF11	89	37.209	Latimeria_chalumnae
ENSELUG00000008230	srek1	53	37.024	ENSLOCG00000009617	srsf11	92	35.101	Lepisosteus_oculatus
ENSELUG00000008230	srek1	55	82.155	ENSLOCG00000010547	srek1	70	81.667	Lepisosteus_oculatus
ENSELUG00000008230	srek1	55	40.199	ENSLAFG00000015882	SRSF11	93	37.950	Loxodonta_africana
ENSELUG00000008230	srek1	60	67.598	ENSLAFG00000013853	SREK1	100	50.664	Loxodonta_africana
ENSELUG00000008230	srek1	54	77.551	ENSMFAG00000039823	SREK1	85	82.353	Macaca_fascicularis
ENSELUG00000008230	srek1	54	40.339	ENSMFAG00000043405	SRSF11	92	37.297	Macaca_fascicularis
ENSELUG00000008230	srek1	54	40.339	ENSMMUG00000013852	SRSF11	94	37.455	Macaca_mulatta
ENSELUG00000008230	srek1	54	77.551	ENSMMUG00000014586	SREK1	79	82.558	Macaca_mulatta
ENSELUG00000008230	srek1	54	77.551	ENSMNEG00000030723	SREK1	85	82.353	Macaca_nemestrina
ENSELUG00000008230	srek1	54	40.339	ENSMNEG00000029428	SRSF11	92	37.297	Macaca_nemestrina
ENSELUG00000008230	srek1	54	40.339	ENSMLEG00000041592	SRSF11	92	37.297	Mandrillus_leucophaeus
ENSELUG00000008230	srek1	54	77.551	ENSMLEG00000039078	SREK1	85	82.353	Mandrillus_leucophaeus
ENSELUG00000008230	srek1	54	77.891	ENSMICG00000034959	SREK1	85	83.529	Microcebus_murinus
ENSELUG00000008230	srek1	54	38.644	ENSMOCG00000011388	Srsf11	81	38.654	Microtus_ochrogaster
ENSELUG00000008230	srek1	60	68.169	ENSMOCG00000001536	-	57	71.123	Microtus_ochrogaster
ENSELUG00000008230	srek1	75	79.599	ENSMALG00000017086	srek1	98	89.655	Monopterus_albus
ENSELUG00000008230	srek1	54	38.225	MGP_CAROLIEiJ_G0025767	Srsf11	86	67.442	Mus_caroli
ENSELUG00000008230	srek1	54	38.225	ENSMUSG00000055436	Srsf11	85	67.442	Mus_musculus
ENSELUG00000008230	srek1	54	38.225	MGP_PahariEiJ_G0027217	Srsf11	86	67.442	Mus_pahari
ENSELUG00000008230	srek1	54	38.225	MGP_SPRETEiJ_G0026719	Srsf11	86	67.442	Mus_spretus
ENSELUG00000008230	srek1	54	40.000	ENSMPUG00000000892	SRSF11	92	37.117	Mustela_putorius_furo
ENSELUG00000008230	srek1	55	40.134	ENSMLUG00000006203	-	85	37.984	Myotis_lucifugus
ENSELUG00000008230	srek1	54	38.225	ENSMLUG00000026338	-	85	35.261	Myotis_lucifugus
ENSELUG00000008230	srek1	54	38.908	ENSNGAG00000010637	Srsf11	81	36.873	Nannospalax_galili
ENSELUG00000008230	srek1	54	40.339	ENSNLEG00000009400	SRSF11	92	37.297	Nomascus_leucogenys
ENSELUG00000008230	srek1	54	77.551	ENSNLEG00000003827	SREK1	85	82.353	Nomascus_leucogenys
ENSELUG00000008230	srek1	54	77.891	ENSOPRG00000012111	SREK1	52	75.333	Ochotona_princeps
ENSELUG00000008230	srek1	54	40.000	ENSODEG00000006289	SRSF11	91	38.060	Octodon_degus
ENSELUG00000008230	srek1	55	81.081	ENSONIG00000011080	srek1	92	63.913	Oreochromis_niloticus
ENSELUG00000008230	srek1	50	75.954	ENSOANG00000005029	SREK1	86	52.381	Ornithorhynchus_anatinus
ENSELUG00000008230	srek1	54	40.203	ENSOCUG00000025440	-	79	36.748	Oryctolagus_cuniculus
ENSELUG00000008230	srek1	54	39.527	ENSOCUG00000024114	-	79	36.303	Oryctolagus_cuniculus
ENSELUG00000008230	srek1	53	40.138	ENSOMEG00000022450	srsf11	77	64.167	Oryzias_melastigma
ENSELUG00000008230	srek1	77	69.900	ENSOMEG00000015817	srek1	57	68.562	Oryzias_melastigma
ENSELUG00000008230	srek1	54	40.000	ENSOARG00000011887	SRSF11	93	36.577	Ovis_aries
ENSELUG00000008230	srek1	53	77.656	ENSPPAG00000031605	SREK1	90	74.863	Pan_paniscus
ENSELUG00000008230	srek1	54	40.339	ENSPPAG00000036149	SRSF11	92	37.297	Pan_paniscus
ENSELUG00000008230	srek1	54	40.000	ENSPPRG00000002720	SRSF11	85	38.178	Panthera_pardus
ENSELUG00000008230	srek1	54	77.211	ENSPPRG00000024617	SREK1	85	81.176	Panthera_pardus
ENSELUG00000008230	srek1	54	77.211	ENSPTIG00000006608	SREK1	85	81.176	Panthera_tigris_altaica
ENSELUG00000008230	srek1	54	77.551	ENSPTRG00000016936	SREK1	85	82.353	Pan_troglodytes
ENSELUG00000008230	srek1	54	40.339	ENSPTRG00000000852	SRSF11	92	37.297	Pan_troglodytes
ENSELUG00000008230	srek1	54	77.551	ENSPANG00000008953	SREK1	85	82.353	Papio_anubis
ENSELUG00000008230	srek1	54	40.339	ENSPANG00000018677	SRSF11	92	37.297	Papio_anubis
ENSELUG00000008230	srek1	99	70.350	ENSPKIG00000025563	srek1	99	67.772	Paramormyrops_kingsleyae
ENSELUG00000008230	srek1	54	41.017	ENSPSIG00000005152	SRSF11	87	38.462	Pelodiscus_sinensis
ENSELUG00000008230	srek1	98	51.020	ENSPEMG00000024051	-	96	44.416	Peromyscus_maniculatus_bairdii
ENSELUG00000008230	srek1	54	40.339	ENSPCIG00000002083	SRSF11	83	38.356	Phascolarctos_cinereus
ENSELUG00000008230	srek1	78	47.982	ENSPMEG00000006831	srek1	91	47.393	Poecilia_mexicana
ENSELUG00000008230	srek1	54	40.339	ENSPPYG00000001245	SRSF11	92	37.297	Pongo_abelii
ENSELUG00000008230	srek1	53	39.863	ENSPCOG00000025365	SRSF11	81	42.073	Propithecus_coquereli
ENSELUG00000008230	srek1	54	77.891	ENSPCOG00000026230	SREK1	85	83.529	Propithecus_coquereli
ENSELUG00000008230	srek1	99	68.991	ENSPNAG00000004328	srek1	100	65.065	Pygocentrus_nattereri
ENSELUG00000008230	srek1	54	38.225	ENSRNOG00000029592	Srsf11	81	38.654	Rattus_norvegicus
ENSELUG00000008230	srek1	54	40.339	ENSRBIG00000042971	SRSF11	63	68.293	Rhinopithecus_bieti
ENSELUG00000008230	srek1	54	77.551	ENSRBIG00000033818	SREK1	85	82.353	Rhinopithecus_bieti
ENSELUG00000008230	srek1	54	40.339	ENSRROG00000039667	SRSF11	92	37.297	Rhinopithecus_roxellana
ENSELUG00000008230	srek1	54	77.551	ENSRROG00000017210	SREK1	85	82.353	Rhinopithecus_roxellana
ENSELUG00000008230	srek1	54	77.551	ENSSBOG00000031230	SREK1	85	82.353	Saimiri_boliviensis_boliviensis
ENSELUG00000008230	srek1	54	40.339	ENSSBOG00000033461	SRSF11	63	68.293	Saimiri_boliviensis_boliviensis
ENSELUG00000008230	srek1	54	40.339	ENSSHAG00000012111	SRSF11	89	38.132	Sarcophilus_harrisii
ENSELUG00000008230	srek1	98	68.901	ENSSFOG00015004995	srek1	96	71.190	Scleropages_formosus
ENSELUG00000008230	srek1	53	38.754	ENSSMAG00000019897	-	98	35.125	Scophthalmus_maximus
ENSELUG00000008230	srek1	53	40.138	ENSSDUG00000004582	SRSF11	75	63.636	Seriola_dumerili
ENSELUG00000008230	srek1	53	39.175	ENSSLDG00000012105	-	92	55.172	Seriola_lalandi_dorsalis
ENSELUG00000008230	srek1	55	76.333	ENSSPUG00000016553	SREK1	89	76.817	Sphenodon_punctatus
ENSELUG00000008230	srek1	55	40.199	ENSSPUG00000016145	SRSF11	90	36.486	Sphenodon_punctatus
ENSELUG00000008230	srek1	53	39.792	ENSSPAG00000005684	srsf11	77	63.636	Stegastes_partitus
ENSELUG00000008230	srek1	79	63.850	ENSTNIG00000013463	srek1	69	77.740	Tetraodon_nigroviridis
ENSELUG00000008230	srek1	54	39.590	ENSTTRG00000015054	SRSF11	65	37.709	Tursiops_truncatus
ENSELUG00000008230	srek1	54	39.865	ENSUMAG00000006618	SRSF11	89	37.827	Ursus_maritimus
ENSELUG00000008230	srek1	55	76.052	ENSXETG00000021460	srek1	94	62.316	Xenopus_tropicalis
ENSELUG00000008230	srek1	54	39.661	ENSXETG00000012371	SRSF11	75	36.971	Xenopus_tropicalis