EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000009891 (Gene tree)
Gene ID: 105020719
Gene Symbol: cirbpa
Alias: -
Full Name: cold-inducible RNA-binding protein B
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 4945 bases
Position: chrLG03:13110043-13114987
Accession: 105020719
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000032098	RRM_1	PF00076.22	1.6e-25	1	1
ENSELUP00000009323	RRM_1	PF00076.22	1.7e-25	1	1
ENSELUP00000009310	RRM_1	PF00076.22	1.8e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000004042	-	1072	XM_020045402	ENSELUP00000009323	194 (aa)	XP_019900961	-
ENSELUT00000004087	-	561	-	ENSELUP00000032098	186 (aa)	-	-
ENSELUT00000004066	-	1978	XM_010887951	ENSELUP00000009310	197 (aa)	XP_010886253	UPI00097321B5

Gene Model

Click here to download ENSELUG00000009891's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000009891's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000009891	cirbpa	69	36.111	ENSELUG00000023043	elavl3	63	36.111
ENSELUG00000009891	cirbpa	63	69.672	ENSELUG00000004675	-	55	80.247
ENSELUG00000009891	cirbpa	52	46.479	ENSELUG00000020089	-	53	44.737
ENSELUG00000009891	cirbpa	55	49.296	ENSELUG00000023080	hnrnpa3	51	47.368
ENSELUG00000009891	cirbpa	58	37.500	ENSELUG00000008025	elavl4	57	37.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000009891	cirbpa	90	60.116	ENSGACG00000014978	-	100	60.116	Gasterosteus_aculeatus
ENSELUG00000009891	cirbpa	100	63.500	ENSLBEG00000000292	cirbpa	50	80.247	Labrus_bergylta
ENSELUG00000009891	cirbpa	100	67.157	ENSPNAG00000019997	cirbpb	50	56.034	Pygocentrus_nattereri
ENSELUG00000009891	cirbpa	100	58.763	ENSSPAG00000023037	cirbpa	50	86.420	Stegastes_partitus
ENSELUG00000009891	cirbpa	100	59.898	ENSTRUG00000010187	cirbpa	60	82.716	Takifugu_rubripes
ENSELUG00000009891	cirbpa	100	68.041	ENSXCOG00000008262	cirbpa	92	80.822	Xiphophorus_couchianus