EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000010138 (Gene tree)
Gene ID: 105024879
Gene Symbol: lsm8
Alias: -
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 1502 bases
Position: chrLG18:22540282-22541783
Accession: 105024879
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000032264	LSM	PF01423.22	1.1e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000003662	-	556	-	ENSELUP00000032264	96 (aa)	-	C1BYC7

Gene Model

Click here to download ENSELUG00000010138's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03018	RNA degradation	KEGG
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000010138's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000010138	lsm8	72	36.232	ENSELUG00000002322	lsm1	51	36.232
ENSELUG00000010138	lsm8	73	35.526	ENSELUG00000000497	lsm7	67	35.526
ENSELUG00000010138	lsm8	84	33.333	ENSELUG00000023374	lsm1	60	33.333
ENSELUG00000010138	lsm8	76	38.158	ENSELUG00000019427	naa38	64	38.158

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000010138	lsm8	100	91.667	ENSG00000128534	LSM8	100	94.667	Homo_sapiens
ENSELUG00000010138	lsm8	100	95.833	ENSAPOG00000008649	lsm8	100	95.833	Acanthochromis_polyacanthus
ENSELUG00000010138	lsm8	100	91.667	ENSAMEG00000001162	LSM8	100	91.667	Ailuropoda_melanoleuca
ENSELUG00000010138	lsm8	78	96.000	ENSACIG00000014694	lsm8	100	96.000	Amphilophus_citrinellus
ENSELUG00000010138	lsm8	100	95.833	ENSAOCG00000013926	lsm8	100	95.833	Amphiprion_ocellaris
ENSELUG00000010138	lsm8	100	95.833	ENSAPEG00000023502	lsm8	100	95.833	Amphiprion_percula
ENSELUG00000010138	lsm8	78	96.000	ENSATEG00000023432	lsm8	100	96.000	Anabas_testudineus
ENSELUG00000010138	lsm8	95	88.298	ENSAPLG00000005115	LSM8	95	88.298	Anas_platyrhynchos
ENSELUG00000010138	lsm8	100	91.667	ENSANAG00000027771	LSM8	100	91.892	Aotus_nancymaae
ENSELUG00000010138	lsm8	100	95.833	ENSACLG00000011253	lsm8	100	95.833	Astatotilapia_calliptera
ENSELUG00000010138	lsm8	100	94.792	ENSAMXG00000042902	lsm8	100	94.792	Astyanax_mexicanus
ENSELUG00000010138	lsm8	100	91.667	ENSBTAG00000012649	LSM8	100	91.667	Bos_taurus
ENSELUG00000010138	lsm8	98	57.447	WBGene00003082	lsm-8	96	57.447	Caenorhabditis_elegans
ENSELUG00000010138	lsm8	100	91.667	ENSCJAG00000046406	LSM8	100	91.892	Callithrix_jacchus
ENSELUG00000010138	lsm8	98	92.553	ENSCAFG00000016459	LSM8	95	92.553	Canis_familiaris
ENSELUG00000010138	lsm8	100	91.667	ENSCAFG00020007643	-	100	91.667	Canis_lupus_dingo
ENSELUG00000010138	lsm8	89	91.765	ENSCAFG00020012800	-	66	91.765	Canis_lupus_dingo
ENSELUG00000010138	lsm8	89	94.118	ENSCHIG00000014201	LSM8	90	94.118	Capra_hircus
ENSELUG00000010138	lsm8	100	91.667	ENSTSYG00000032434	LSM8	100	91.667	Carlito_syrichta
ENSELUG00000010138	lsm8	77	93.243	ENSCAPG00000008253	LSM8	100	93.243	Cavia_aperea
ENSELUG00000010138	lsm8	100	91.667	ENSCPOG00000035673	LSM8	100	91.667	Cavia_porcellus
ENSELUG00000010138	lsm8	100	91.667	ENSCCAG00000021329	LSM8	100	91.892	Cebus_capucinus
ENSELUG00000010138	lsm8	100	91.667	ENSCATG00000045302	LSM8	100	91.892	Cercocebus_atys
ENSELUG00000010138	lsm8	100	91.667	ENSCLAG00000003726	LSM8	100	91.667	Chinchilla_lanigera
ENSELUG00000010138	lsm8	100	88.542	ENSCSAG00000019007	-	100	88.542	Chlorocebus_sabaeus
ENSELUG00000010138	lsm8	100	91.667	ENSCSAG00000010802	-	100	91.667	Chlorocebus_sabaeus
ENSELUG00000010138	lsm8	89	94.118	ENSCPBG00000008154	LSM8	87	94.118	Chrysemys_picta_bellii
ENSELUG00000010138	lsm8	100	72.917	ENSCING00000024877	-	100	72.917	Ciona_intestinalis
ENSELUG00000010138	lsm8	100	91.667	ENSCANG00000040728	LSM8	100	91.892	Colobus_angolensis_palliatus
ENSELUG00000010138	lsm8	100	91.667	ENSCGRG00001000450	Lsm8	100	91.667	Cricetulus_griseus_chok1gshd
ENSELUG00000010138	lsm8	89	94.118	ENSCGRG00000005587	Lsm8	100	94.118	Cricetulus_griseus_crigri
ENSELUG00000010138	lsm8	100	84.375	ENSCSEG00000004164	lsm8	100	84.375	Cynoglossus_semilaevis
ENSELUG00000010138	lsm8	100	94.792	ENSCVAG00000020547	lsm8	100	94.792	Cyprinodon_variegatus
ENSELUG00000010138	lsm8	100	93.750	ENSDARG00000091656	lsm8	100	93.750	Danio_rerio
ENSELUG00000010138	lsm8	100	91.667	ENSDNOG00000034613	LSM8	100	91.667	Dasypus_novemcinctus
ENSELUG00000010138	lsm8	100	91.667	ENSDORG00000027868	Lsm8	100	91.667	Dipodomys_ordii
ENSELUG00000010138	lsm8	98	68.085	FBgn0035271	CG2021	99	68.085	Drosophila_melanogaster
ENSELUG00000010138	lsm8	100	92.708	ENSETEG00000011594	LSM8	100	92.708	Echinops_telfairi
ENSELUG00000010138	lsm8	77	91.892	ENSEBUG00000012017	lsm8	100	91.892	Eptatretus_burgeri
ENSELUG00000010138	lsm8	100	91.667	ENSEASG00005008932	LSM8	62	91.667	Equus_asinus_asinus
ENSELUG00000010138	lsm8	89	94.118	ENSECAG00000024025	LSM8	77	94.118	Equus_caballus
ENSELUG00000010138	lsm8	100	91.667	ENSFCAG00000036620	-	100	91.667	Felis_catus
ENSELUG00000010138	lsm8	85	69.512	ENSFCAG00000044794	-	83	69.512	Felis_catus
ENSELUG00000010138	lsm8	100	92.708	ENSFALG00000010023	LSM8	100	92.708	Ficedula_albicollis
ENSELUG00000010138	lsm8	100	91.667	ENSFDAG00000019530	LSM8	100	91.667	Fukomys_damarensis
ENSELUG00000010138	lsm8	100	95.833	ENSFHEG00000013729	lsm8	100	95.833	Fundulus_heteroclitus
ENSELUG00000010138	lsm8	100	92.708	ENSGALG00000009110	LSM8	100	92.708	Gallus_gallus
ENSELUG00000010138	lsm8	100	94.792	ENSGAFG00000001135	lsm8	100	94.792	Gambusia_affinis
ENSELUG00000010138	lsm8	100	91.667	ENSGAGG00000017366	LSM8	100	91.667	Gopherus_agassizii
ENSELUG00000010138	lsm8	100	91.667	ENSGGOG00000041883	LSM8	100	91.667	Gorilla_gorilla
ENSELUG00000010138	lsm8	100	95.833	ENSHBUG00000003646	lsm8	100	95.833	Haplochromis_burtoni
ENSELUG00000010138	lsm8	71	94.118	ENSHGLG00000001988	-	99	94.118	Heterocephalus_glaber_female
ENSELUG00000010138	lsm8	100	85.417	ENSHGLG00000019782	-	100	85.417	Heterocephalus_glaber_female
ENSELUG00000010138	lsm8	98	90.426	ENSHGLG00100003934	-	94	90.426	Heterocephalus_glaber_male
ENSELUG00000010138	lsm8	100	87.500	ENSHGLG00100012166	-	100	87.500	Heterocephalus_glaber_male
ENSELUG00000010138	lsm8	100	94.792	ENSHCOG00000005037	lsm8	100	94.792	Hippocampus_comes
ENSELUG00000010138	lsm8	100	94.792	ENSIPUG00000019811	NAA38	100	94.792	Ictalurus_punctatus
ENSELUG00000010138	lsm8	92	81.818	ENSSTOG00000034801	-	81	81.818	Ictidomys_tridecemlineatus
ENSELUG00000010138	lsm8	100	91.667	ENSSTOG00000009039	LSM8	100	91.667	Ictidomys_tridecemlineatus
ENSELUG00000010138	lsm8	100	91.667	ENSJJAG00000009031	Lsm8	99	91.667	Jaculus_jaculus
ENSELUG00000010138	lsm8	100	95.833	ENSKMAG00000018983	lsm8	100	95.833	Kryptolebias_marmoratus
ENSELUG00000010138	lsm8	100	92.708	ENSLACG00000010231	LSM8	100	92.708	Latimeria_chalumnae
ENSELUG00000010138	lsm8	100	93.750	ENSLOCG00000015580	lsm8	100	93.750	Lepisosteus_oculatus
ENSELUG00000010138	lsm8	100	90.722	ENSLAFG00000011242	LSM8	100	90.722	Loxodonta_africana
ENSELUG00000010138	lsm8	100	88.542	ENSMFAG00000013044	-	100	88.542	Macaca_fascicularis
ENSELUG00000010138	lsm8	100	91.667	ENSMFAG00000035798	LSM8	100	91.892	Macaca_fascicularis
ENSELUG00000010138	lsm8	100	91.667	ENSMMUG00000046401	LSM8	100	91.892	Macaca_mulatta
ENSELUG00000010138	lsm8	100	91.667	ENSMNEG00000036764	-	100	91.892	Macaca_nemestrina
ENSELUG00000010138	lsm8	78	92.000	ENSMNEG00000011141	-	100	92.000	Macaca_nemestrina
ENSELUG00000010138	lsm8	100	91.667	ENSMLEG00000035828	-	100	91.892	Mandrillus_leucophaeus
ENSELUG00000010138	lsm8	100	79.167	ENSMLEG00000039324	-	100	79.167	Mandrillus_leucophaeus
ENSELUG00000010138	lsm8	78	96.000	ENSMAMG00000018839	lsm8	100	96.000	Mastacembelus_armatus
ENSELUG00000010138	lsm8	100	95.833	ENSMZEG00005019138	lsm8	100	95.833	Maylandia_zebra
ENSELUG00000010138	lsm8	100	92.708	ENSMGAG00000008808	LSM8	100	92.708	Meleagris_gallopavo
ENSELUG00000010138	lsm8	75	88.889	ENSMAUG00000020287	-	100	86.486	Mesocricetus_auratus
ENSELUG00000010138	lsm8	100	87.500	ENSMAUG00000015721	-	100	87.500	Mesocricetus_auratus
ENSELUG00000010138	lsm8	100	72.917	ENSMAUG00000015356	-	100	72.917	Mesocricetus_auratus
ENSELUG00000010138	lsm8	100	91.667	ENSMICG00000042730	LSM8	100	91.667	Microcebus_murinus
ENSELUG00000010138	lsm8	100	91.667	ENSMOCG00000001688	Lsm8	100	91.667	Microtus_ochrogaster
ENSELUG00000010138	lsm8	78	96.000	ENSMMOG00000006046	lsm8	100	96.000	Mola_mola
ENSELUG00000010138	lsm8	76	84.000	ENSMODG00000015729	LSM8	96	84.000	Monodelphis_domestica
ENSELUG00000010138	lsm8	100	94.792	ENSMALG00000000405	lsm8	100	94.792	Monopterus_albus
ENSELUG00000010138	lsm8	100	91.667	MGP_CAROLIEiJ_G0028125	-	100	91.667	Mus_caroli
ENSELUG00000010138	lsm8	100	91.667	ENSMUSG00000044155	Lsm8	100	91.667	Mus_musculus
ENSELUG00000010138	lsm8	100	91.667	MGP_PahariEiJ_G0021881	Lsm8	100	94.667	Mus_pahari
ENSELUG00000010138	lsm8	100	91.667	MGP_SPRETEiJ_G0029125	-	100	91.667	Mus_spretus
ENSELUG00000010138	lsm8	100	90.625	ENSMLUG00000027762	-	100	90.625	Myotis_lucifugus
ENSELUG00000010138	lsm8	100	91.667	ENSMLUG00000006837	-	100	91.667	Myotis_lucifugus
ENSELUG00000010138	lsm8	100	91.667	ENSNGAG00000016554	Lsm8	100	91.667	Nannospalax_galili
ENSELUG00000010138	lsm8	100	95.833	ENSNBRG00000014441	lsm8	100	95.833	Neolamprologus_brichardi
ENSELUG00000010138	lsm8	100	91.667	ENSNLEG00000011768	LSM8	100	91.667	Nomascus_leucogenys
ENSELUG00000010138	lsm8	100	80.208	ENSMEUG00000007801	LSM8	100	80.208	Notamacropus_eugenii
ENSELUG00000010138	lsm8	89	94.118	ENSOPRG00000014809	LSM8	100	94.118	Ochotona_princeps
ENSELUG00000010138	lsm8	90	75.581	ENSODEG00000020290	-	100	75.581	Octodon_degus
ENSELUG00000010138	lsm8	100	91.667	ENSODEG00000000418	-	100	91.667	Octodon_degus
ENSELUG00000010138	lsm8	100	90.625	ENSOANG00000014536	LSM8	100	90.625	Ornithorhynchus_anatinus
ENSELUG00000010138	lsm8	100	90.722	ENSOCUG00000017359	LSM8	100	90.722	Oryctolagus_cuniculus
ENSELUG00000010138	lsm8	100	84.375	ENSORLG00000017432	lsm8	100	84.375	Oryzias_latipes
ENSELUG00000010138	lsm8	100	84.375	ENSORLG00020004376	lsm8	100	84.375	Oryzias_latipes_hni
ENSELUG00000010138	lsm8	100	95.833	ENSORLG00015003757	lsm8	100	95.833	Oryzias_latipes_hsok
ENSELUG00000010138	lsm8	100	82.292	ENSOMEG00000022509	lsm8	100	83.333	Oryzias_melastigma
ENSELUG00000010138	lsm8	100	91.667	ENSOGAG00000013377	LSM8	100	91.667	Otolemur_garnettii
ENSELUG00000010138	lsm8	100	91.667	ENSOARG00000017974	LSM8	100	91.667	Ovis_aries
ENSELUG00000010138	lsm8	78	94.667	ENSPPAG00000043228	-	100	94.667	Pan_paniscus
ENSELUG00000010138	lsm8	100	91.667	ENSPPRG00000006444	LSM8	100	91.667	Panthera_pardus
ENSELUG00000010138	lsm8	100	91.667	ENSPTIG00000004722	LSM8	100	91.667	Panthera_tigris_altaica
ENSELUG00000010138	lsm8	78	94.667	ENSPTRG00000046596	-	100	94.667	Pan_troglodytes
ENSELUG00000010138	lsm8	100	87.500	ENSPANG00000019395	-	100	87.500	Papio_anubis
ENSELUG00000010138	lsm8	100	91.667	ENSPANG00000035470	-	100	91.892	Papio_anubis
ENSELUG00000010138	lsm8	89	94.118	ENSPKIG00000006092	lsm8	86	94.118	Paramormyrops_kingsleyae
ENSELUG00000010138	lsm8	78	94.667	ENSPSIG00000017054	LSM8	100	94.667	Pelodiscus_sinensis
ENSELUG00000010138	lsm8	78	96.000	ENSPMGG00000016442	lsm8	100	96.000	Periophthalmus_magnuspinnatus
ENSELUG00000010138	lsm8	77	91.892	ENSPEMG00000009153	Lsm8	100	91.892	Peromyscus_maniculatus_bairdii
ENSELUG00000010138	lsm8	97	93.548	ENSPCIG00000021467	LSM8	98	93.548	Phascolarctos_cinereus
ENSELUG00000010138	lsm8	100	94.792	ENSPFOG00000012340	lsm8	100	94.792	Poecilia_formosa
ENSELUG00000010138	lsm8	100	85.417	ENSPLAG00000000516	lsm8	100	85.417	Poecilia_latipinna
ENSELUG00000010138	lsm8	100	94.792	ENSPMEG00000022567	lsm8	100	94.792	Poecilia_mexicana
ENSELUG00000010138	lsm8	76	83.750	ENSPREG00000005527	lsm8	72	83.750	Poecilia_reticulata
ENSELUG00000010138	lsm8	100	91.667	ENSPPYG00000017942	LSM8	100	91.667	Pongo_abelii
ENSELUG00000010138	lsm8	100	91.667	ENSPCOG00000003309	-	100	91.667	Propithecus_coquereli
ENSELUG00000010138	lsm8	97	73.118	ENSPCOG00000017982	-	97	73.118	Propithecus_coquereli
ENSELUG00000010138	lsm8	89	92.941	ENSPVAG00000000990	LSM8	100	92.941	Pteropus_vampyrus
ENSELUG00000010138	lsm8	100	95.833	ENSPNYG00000011448	lsm8	100	95.833	Pundamilia_nyererei
ENSELUG00000010138	lsm8	100	94.792	ENSPNAG00000010252	lsm8	100	94.792	Pygocentrus_nattereri
ENSELUG00000010138	lsm8	100	91.667	ENSRNOG00000058677	Lsm8	100	91.667	Rattus_norvegicus
ENSELUG00000010138	lsm8	100	91.667	ENSRBIG00000032851	LSM8	100	91.892	Rhinopithecus_bieti
ENSELUG00000010138	lsm8	100	91.667	ENSRROG00000039618	LSM8	100	91.892	Rhinopithecus_roxellana
ENSELUG00000010138	lsm8	100	91.667	ENSSBOG00000023223	LSM8	100	91.892	Saimiri_boliviensis_boliviensis
ENSELUG00000010138	lsm8	100	91.667	ENSSHAG00000018435	-	100	91.667	Sarcophilus_harrisii
ENSELUG00000010138	lsm8	100	93.750	ENSSFOG00015004412	lsm8	100	93.750	Scleropages_formosus
ENSELUG00000010138	lsm8	78	96.000	ENSSMAG00000009458	lsm8	100	96.000	Scophthalmus_maximus
ENSELUG00000010138	lsm8	100	95.833	ENSSDUG00000014702	lsm8	100	95.833	Seriola_dumerili
ENSELUG00000010138	lsm8	78	96.000	ENSSLDG00000016870	lsm8	100	96.000	Seriola_lalandi_dorsalis
ENSELUG00000010138	lsm8	75	94.444	ENSSARG00000009628	-	100	94.444	Sorex_araneus
ENSELUG00000010138	lsm8	100	91.667	ENSSPUG00000017419	LSM8	100	91.667	Sphenodon_punctatus
ENSELUG00000010138	lsm8	100	95.833	ENSSPAG00000021422	lsm8	100	95.833	Stegastes_partitus
ENSELUG00000010138	lsm8	100	91.667	ENSSSCG00000021652	LSM8	100	91.667	Sus_scrofa
ENSELUG00000010138	lsm8	100	92.708	ENSTGUG00000004730	-	100	92.708	Taeniopygia_guttata
ENSELUG00000010138	lsm8	100	91.667	ENSTGUG00000016823	-	100	91.667	Taeniopygia_guttata
ENSELUG00000010138	lsm8	100	95.833	ENSTRUG00000025192	lsm8	100	95.833	Takifugu_rubripes
ENSELUG00000010138	lsm8	100	95.833	ENSTNIG00000002864	lsm8	100	95.833	Tetraodon_nigroviridis
ENSELUG00000010138	lsm8	100	91.667	ENSTTRG00000001023	LSM8	100	91.667	Tursiops_truncatus
ENSELUG00000010138	lsm8	92	90.909	ENSUAMG00000006943	-	92	90.909	Ursus_americanus
ENSELUG00000010138	lsm8	92	90.909	ENSUMAG00000003073	LSM8	94	90.909	Ursus_maritimus
ENSELUG00000010138	lsm8	100	91.667	ENSVPAG00000001530	LSM8	100	91.667	Vicugna_pacos
ENSELUG00000010138	lsm8	78	92.000	ENSVVUG00000013248	-	82	92.000	Vulpes_vulpes
ENSELUG00000010138	lsm8	93	93.258	ENSXETG00000021829	lsm8	92	93.258	Xenopus_tropicalis
ENSELUG00000010138	lsm8	100	92.708	ENSXCOG00000012938	lsm8	100	92.708	Xiphophorus_couchianus
ENSELUG00000010138	lsm8	100	94.792	ENSXMAG00000025919	lsm8	100	94.792	Xiphophorus_maculatus