EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000010293 (Gene tree)
Gene ID: 105018103
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 17028 bases
Position: chrLG03:25017665-25034692
Accession: 105018103
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000032361	EST1	PF10374.9	3.4e-26	1	1
ENSELUP00000009669	EST1	PF10374.9	3.4e-26	1	1
ENSELUP00000009642	EST1	PF10374.9	3.5e-26	1	1
ENSELUP00000032301	EST1	PF10374.9	3.8e-26	1	1
ENSELUP00000032301	EST1_DNA_bind	PF10373.9	6.8e-48	1	1
ENSELUP00000009669	EST1_DNA_bind	PF10373.9	7.6e-48	1	1
ENSELUP00000032361	EST1_DNA_bind	PF10373.9	8.2e-48	1	1
ENSELUP00000009642	EST1_DNA_bind	PF10373.9	8.5e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000003492	-	7215	XM_010883246	ENSELUP00000009642	1187 (aa)	XP_010881548	UPI00057694E9
ENSELUT00000003567	-	3129	-	ENSELUP00000032301	1042 (aa)	-	-
ENSELUT00000003446	-	7452	-	ENSELUP00000009669	1109 (aa)	-	-
ENSELUT00000003400	-	7602	-	ENSELUP00000032361	1159 (aa)	-	-

Gene Model

Click here to download ENSELUG00000010293's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000010293's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000010293	smg7	99	66.515	ENSG00000116698	SMG7	86	94.340	Homo_sapiens
ENSELUG00000010293	smg7	89	86.756	ENSAPOG00000009611	smg7	94	87.519	Acanthochromis_polyacanthus
ENSELUG00000010293	smg7	99	66.016	ENSAMEG00000002357	SMG7	100	65.734	Ailuropoda_melanoleuca
ENSELUG00000010293	smg7	89	80.519	ENSACIG00000015152	smg7	100	73.860	Amphilophus_citrinellus
ENSELUG00000010293	smg7	98	82.320	ENSAOCG00000013538	smg7	100	79.671	Amphiprion_ocellaris
ENSELUG00000010293	smg7	98	82.182	ENSAPEG00000007851	smg7	100	79.359	Amphiprion_percula
ENSELUG00000010293	smg7	99	77.778	ENSATEG00000006931	smg7	100	76.495	Anabas_testudineus
ENSELUG00000010293	smg7	99	66.342	ENSAPLG00000015811	SMG7	92	71.763	Anas_platyrhynchos
ENSELUG00000010293	smg7	99	66.640	ENSACAG00000014989	SMG7	99	66.231	Anolis_carolinensis
ENSELUG00000010293	smg7	99	66.667	ENSANAG00000028114	SMG7	85	94.268	Aotus_nancymaae
ENSELUG00000010293	smg7	100	78.648	ENSACLG00000022079	smg7	100	78.430	Astatotilapia_calliptera
ENSELUG00000010293	smg7	100	80.050	ENSAMXG00000020809	smg7	100	81.083	Astyanax_mexicanus
ENSELUG00000010293	smg7	99	65.340	ENSBTAG00000008003	SMG7	90	76.923	Bos_taurus
ENSELUG00000010293	smg7	99	66.284	ENSCJAG00000005135	SMG7	87	93.125	Callithrix_jacchus
ENSELUG00000010293	smg7	99	65.239	ENSCAFG00000013276	SMG7	97	64.992	Canis_familiaris
ENSELUG00000010293	smg7	99	66.339	ENSCAFG00020015475	SMG7	89	90.244	Canis_lupus_dingo
ENSELUG00000010293	smg7	100	64.720	ENSCHIG00000018192	SMG7	92	76.923	Capra_hircus
ENSELUG00000010293	smg7	99	65.752	ENSTSYG00000002667	SMG7	80	94.231	Carlito_syrichta
ENSELUG00000010293	smg7	99	65.157	ENSCPOG00000008906	SMG7	99	64.487	Cavia_porcellus
ENSELUG00000010293	smg7	99	65.959	ENSCCAG00000028596	SMG7	85	94.268	Cebus_capucinus
ENSELUG00000010293	smg7	99	65.959	ENSCATG00000011063	SMG7	85	94.268	Cercocebus_atys
ENSELUG00000010293	smg7	99	65.606	ENSCLAG00000010751	SMG7	99	64.769	Chinchilla_lanigera
ENSELUG00000010293	smg7	99	65.185	ENSCSAG00000012654	SMG7	97	64.774	Chlorocebus_sabaeus
ENSELUG00000010293	smg7	94	57.923	ENSCHOG00000010522	SMG7	93	58.365	Choloepus_hoffmanni
ENSELUG00000010293	smg7	99	68.029	ENSCPBG00000015724	SMG7	99	67.596	Chrysemys_picta_bellii
ENSELUG00000010293	smg7	98	65.839	ENSCANG00000015680	SMG7	85	94.268	Colobus_angolensis_palliatus
ENSELUG00000010293	smg7	99	65.099	ENSCGRG00001013705	Smg7	92	76.436	Cricetulus_griseus_chok1gshd
ENSELUG00000010293	smg7	99	64.691	ENSCGRG00000018401	Smg7	93	71.845	Cricetulus_griseus_crigri
ENSELUG00000010293	smg7	99	74.463	ENSCVAG00000011842	smg7	100	79.808	Cyprinodon_variegatus
ENSELUG00000010293	smg7	100	79.170	ENSDARG00000060767	smg7	100	79.453	Danio_rerio
ENSELUG00000010293	smg7	99	65.210	ENSDORG00000007331	Smg7	99	64.798	Dipodomys_ordii
ENSELUG00000010293	smg7	99	64.340	ENSETEG00000002654	SMG7	92	76.765	Echinops_telfairi
ENSELUG00000010293	smg7	99	65.540	ENSEASG00005006524	SMG7	92	77.320	Equus_asinus_asinus
ENSELUG00000010293	smg7	94	89.254	ENSECAG00000004313	SMG7	97	89.021	Equus_caballus
ENSELUG00000010293	smg7	99	63.976	ENSEEUG00000002024	SMG7	86	76.912	Erinaceus_europaeus
ENSELUG00000010293	smg7	99	66.576	ENSFCAG00000010900	SMG7	99	69.340	Felis_catus
ENSELUG00000010293	smg7	99	66.027	ENSFALG00000003047	SMG7	100	66.027	Ficedula_albicollis
ENSELUG00000010293	smg7	99	64.876	ENSFDAG00000012121	SMG7	92	76.418	Fukomys_damarensis
ENSELUG00000010293	smg7	99	75.267	ENSFHEG00000011073	smg7	100	72.832	Fundulus_heteroclitus
ENSELUG00000010293	smg7	87	79.661	ENSGMOG00000004916	smg7	92	79.661	Gadus_morhua
ENSELUG00000010293	smg7	93	74.129	ENSGALG00000004667	SMG7	99	64.566	Gallus_gallus
ENSELUG00000010293	smg7	99	73.956	ENSGAFG00000019000	smg7	100	71.122	Gambusia_affinis
ENSELUG00000010293	smg7	99	73.684	ENSGACG00000001634	smg7	99	73.661	Gasterosteus_aculeatus
ENSELUG00000010293	smg7	99	65.782	ENSGGOG00000002342	SMG7	82	92.500	Gorilla_gorilla
ENSELUG00000010293	smg7	100	78.730	ENSHBUG00000003726	smg7	100	78.430	Haplochromis_burtoni
ENSELUG00000010293	smg7	99	65.517	ENSHGLG00000009353	SMG7	93	76.383	Heterocephalus_glaber_female
ENSELUG00000010293	smg7	99	58.780	ENSHGLG00100004878	-	92	70.103	Heterocephalus_glaber_male
ENSELUG00000010293	smg7	99	65.429	ENSHGLG00100009637	-	93	73.692	Heterocephalus_glaber_male
ENSELUG00000010293	smg7	100	79.250	ENSIPUG00000016997	smg7	100	79.035	Ictalurus_punctatus
ENSELUG00000010293	smg7	99	66.424	ENSSTOG00000000401	SMG7	92	76.583	Ictidomys_tridecemlineatus
ENSELUG00000010293	smg7	99	64.575	ENSJJAG00000012351	Smg7	99	64.657	Jaculus_jaculus
ENSELUG00000010293	smg7	94	74.928	ENSKMAG00000004900	smg7	100	69.140	Kryptolebias_marmoratus
ENSELUG00000010293	smg7	53	72.651	ENSLBEG00000005220	-	75	72.651	Labrus_bergylta
ENSELUG00000010293	smg7	99	75.914	ENSLBEG00000002983	smg7	96	75.647	Labrus_bergylta
ENSELUG00000010293	smg7	99	71.089	ENSLACG00000000972	SMG7	93	78.748	Latimeria_chalumnae
ENSELUG00000010293	smg7	99	73.481	ENSLOCG00000002010	smg7	99	73.317	Lepisosteus_oculatus
ENSELUG00000010293	smg7	99	65.343	ENSLAFG00000008186	SMG7	92	76.574	Loxodonta_africana
ENSELUG00000010293	smg7	99	66.606	ENSMFAG00000031653	SMG7	85	94.268	Macaca_fascicularis
ENSELUG00000010293	smg7	99	65.926	ENSMMUG00000018458	SMG7	99	65.404	Macaca_mulatta
ENSELUG00000010293	smg7	99	65.959	ENSMNEG00000034798	SMG7	85	94.268	Macaca_nemestrina
ENSELUG00000010293	smg7	99	65.959	ENSMLEG00000037170	SMG7	100	65.424	Mandrillus_leucophaeus
ENSELUG00000010293	smg7	90	77.260	ENSMAMG00000018733	smg7	86	77.705	Mastacembelus_armatus
ENSELUG00000010293	smg7	100	78.730	ENSMZEG00005015247	smg7	100	78.347	Maylandia_zebra
ENSELUG00000010293	smg7	98	66.371	ENSMGAG00000001561	SMG7	92	71.802	Meleagris_gallopavo
ENSELUG00000010293	smg7	99	65.017	ENSMAUG00000019484	Smg7	99	64.851	Mesocricetus_auratus
ENSELUG00000010293	smg7	99	66.529	ENSMICG00000007145	SMG7	82	94.268	Microcebus_murinus
ENSELUG00000010293	smg7	99	64.769	ENSMOCG00000020748	Smg7	99	64.356	Microtus_ochrogaster
ENSELUG00000010293	smg7	93	81.910	ENSMMOG00000001524	smg7	98	81.910	Mola_mola
ENSELUG00000010293	smg7	94	66.822	ENSMODG00000007139	SMG7	99	66.325	Monodelphis_domestica
ENSELUG00000010293	smg7	100	77.529	ENSMALG00000000061	smg7	94	77.778	Monopterus_albus
ENSELUG00000010293	smg7	99	65.368	MGP_CAROLIEiJ_G0014704	Smg7	99	64.847	Mus_caroli
ENSELUG00000010293	smg7	99	65.340	ENSMUSG00000042772	Smg7	92	72.614	Mus_musculus
ENSELUG00000010293	smg7	99	65.252	MGP_PahariEiJ_G0027940	Smg7	99	65.045	Mus_pahari
ENSELUG00000010293	smg7	99	65.252	MGP_SPRETEiJ_G0015511	Smg7	92	72.476	Mus_spretus
ENSELUG00000010293	smg7	98	65.442	ENSMPUG00000011732	SMG7	97	64.912	Mustela_putorius_furo
ENSELUG00000010293	smg7	99	64.930	ENSMLUG00000015417	SMG7	92	76.652	Myotis_lucifugus
ENSELUG00000010293	smg7	99	65.639	ENSNGAG00000009836	Smg7	99	64.745	Nannospalax_galili
ENSELUG00000010293	smg7	97	70.991	ENSNBRG00000024343	smg7	99	68.844	Neolamprologus_brichardi
ENSELUG00000010293	smg7	99	66.048	ENSNLEG00000018018	SMG7	100	65.508	Nomascus_leucogenys
ENSELUG00000010293	smg7	75	65.341	ENSMEUG00000004681	SMG7	77	65.341	Notamacropus_eugenii
ENSELUG00000010293	smg7	99	60.533	ENSOPRG00000013942	SMG7	96	60.705	Ochotona_princeps
ENSELUG00000010293	smg7	99	65.871	ENSODEG00000010390	SMG7	99	65.017	Octodon_degus
ENSELUG00000010293	smg7	99	77.660	ENSONIG00000000277	smg7	100	74.835	Oreochromis_niloticus
ENSELUG00000010293	smg7	99	64.750	ENSOANG00000000994	SMG7	93	77.083	Ornithorhynchus_anatinus
ENSELUG00000010293	smg7	99	62.862	ENSOCUG00000005887	SMG7	92	62.500	Oryctolagus_cuniculus
ENSELUG00000010293	smg7	100	74.791	ENSORLG00000007314	smg7	100	74.791	Oryzias_latipes
ENSELUG00000010293	smg7	100	74.958	ENSORLG00020015779	smg7	100	74.958	Oryzias_latipes_hni
ENSELUG00000010293	smg7	100	74.791	ENSORLG00015012289	smg7	100	74.791	Oryzias_latipes_hsok
ENSELUG00000010293	smg7	100	74.791	ENSOMEG00000002328	smg7	100	74.708	Oryzias_melastigma
ENSELUG00000010293	smg7	99	64.621	ENSOGAG00000003107	SMG7	93	63.901	Otolemur_garnettii
ENSELUG00000010293	smg7	98	66.330	ENSOARG00000001352	SMG7	90	76.923	Ovis_aries
ENSELUG00000010293	smg7	99	66.048	ENSPPAG00000031619	SMG7	89	91.463	Pan_paniscus
ENSELUG00000010293	smg7	99	66.549	ENSPPRG00000011222	SMG7	99	64.227	Panthera_pardus
ENSELUG00000010293	smg7	99	64.796	ENSPTIG00000007242	SMG7	100	66.073	Panthera_tigris_altaica
ENSELUG00000010293	smg7	99	66.048	ENSPTRG00000001764	SMG7	85	94.268	Pan_troglodytes
ENSELUG00000010293	smg7	99	65.959	ENSPANG00000004520	SMG7	99	63.517	Papio_anubis
ENSELUG00000010293	smg7	100	74.539	ENSPKIG00000007242	smg7	100	74.539	Paramormyrops_kingsleyae
ENSELUG00000010293	smg7	99	66.198	ENSPSIG00000012201	SMG7	99	66.003	Pelodiscus_sinensis
ENSELUG00000010293	smg7	51	65.854	ENSPMGG00000021833	smg7	96	44.823	Periophthalmus_magnuspinnatus
ENSELUG00000010293	smg7	99	64.356	ENSPEMG00000011315	Smg7	92	75.700	Peromyscus_maniculatus_bairdii
ENSELUG00000010293	smg7	99	67.241	ENSPCIG00000003786	SMG7	89	93.125	Phascolarctos_cinereus
ENSELUG00000010293	smg7	100	74.587	ENSPFOG00000019219	smg7	100	74.257	Poecilia_formosa
ENSELUG00000010293	smg7	99	73.605	ENSPLAG00000001446	smg7	100	71.263	Poecilia_latipinna
ENSELUG00000010293	smg7	99	74.067	ENSPMEG00000005218	smg7	99	73.712	Poecilia_mexicana
ENSELUG00000010293	smg7	89	73.359	ENSPREG00000019039	smg7	92	72.978	Poecilia_reticulata
ENSELUG00000010293	smg7	99	66.048	ENSPPYG00000000427	SMG7	99	63.599	Pongo_abelii
ENSELUG00000010293	smg7	88	74.123	ENSPCAG00000008360	SMG7	86	74.123	Procavia_capensis
ENSELUG00000010293	smg7	99	66.576	ENSPCOG00000011996	SMG7	77	94.268	Propithecus_coquereli
ENSELUG00000010293	smg7	93	60.956	ENSPVAG00000000851	SMG7	82	70.631	Pteropus_vampyrus
ENSELUG00000010293	smg7	100	78.630	ENSPNYG00000007643	smg7	100	78.495	Pundamilia_nyererei
ENSELUG00000010293	smg7	100	80.033	ENSPNAG00000011374	smg7	98	84.653	Pygocentrus_nattereri
ENSELUG00000010293	smg7	99	65.548	ENSRNOG00000027962	Smg7	90	76.912	Rattus_norvegicus
ENSELUG00000010293	smg7	99	65.959	ENSRBIG00000036316	SMG7	100	65.424	Rhinopithecus_bieti
ENSELUG00000010293	smg7	99	65.959	ENSRROG00000035719	SMG7	100	65.424	Rhinopithecus_roxellana
ENSELUG00000010293	smg7	99	66.333	ENSSBOG00000023454	SMG7	86	94.340	Saimiri_boliviensis_boliviensis
ENSELUG00000010293	smg7	99	65.691	ENSSHAG00000013147	SMG7	99	63.517	Sarcophilus_harrisii
ENSELUG00000010293	smg7	100	77.861	ENSSFOG00015017252	smg7	100	77.796	Scleropages_formosus
ENSELUG00000010293	smg7	100	78.482	ENSSMAG00000006067	smg7	100	78.816	Scophthalmus_maximus
ENSELUG00000010293	smg7	98	81.543	ENSSDUG00000017543	smg7	100	75.429	Seriola_dumerili
ENSELUG00000010293	smg7	99	66.197	ENSSPUG00000002064	SMG7	99	63.607	Sphenodon_punctatus
ENSELUG00000010293	smg7	99	77.599	ENSSPAG00000008733	smg7	99	75.104	Stegastes_partitus
ENSELUG00000010293	smg7	99	66.060	ENSSSCG00000015558	SMG7	92	77.172	Sus_scrofa
ENSELUG00000010293	smg7	92	72.772	ENSTGUG00000003928	SMG7	93	71.802	Taeniopygia_guttata
ENSELUG00000010293	smg7	100	67.779	ENSTNIG00000002802	smg7	100	67.429	Tetraodon_nigroviridis
ENSELUG00000010293	smg7	80	68.000	ENSTBEG00000003220	SMG7	75	68.000	Tupaia_belangeri
ENSELUG00000010293	smg7	99	64.334	ENSTTRG00000014778	SMG7	87	77.206	Tursiops_truncatus
ENSELUG00000010293	smg7	96	65.258	ENSUAMG00000017473	SMG7	100	65.634	Ursus_americanus
ENSELUG00000010293	smg7	97	64.936	ENSUMAG00000016389	SMG7	100	65.634	Ursus_maritimus
ENSELUG00000010293	smg7	99	66.211	ENSVVUG00000008976	SMG7	99	68.868	Vulpes_vulpes
ENSELUG00000010293	smg7	99	60.609	ENSXETG00000012528	smg7	99	59.415	Xenopus_tropicalis
ENSELUG00000010293	smg7	99	73.886	ENSXMAG00000007123	smg7	100	71.133	Xiphophorus_maculatus