EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000010439 (Gene tree)
Gene ID: 105027630
Gene Symbol: -
Alias: -
Full Name: ras-related protein Rab-5C-like
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 9543 bases
Position: chrAZJR03000550.1:405841-415383
Accession: 105027630
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000009924	MMR_HSR1	PF01926.23	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000003002	-	2232	XM_010899796	ENSELUP00000009924	220 (aa)	XP_010898098	UPI000575E652

Gene Model

Click here to download ENSELUG00000010439's gene model file

Pathways

Pathway ID	Pathway Name	Source
els04144	Endocytosis	KEGG
els04145	Phagosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000010439's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000010439	-	98	81.481	ENSELUG00000006462	rab5aa	99	81.481
ENSELUG00000010439	-	73	39.157	ENSELUG00000013219	rab33a	69	39.157
ENSELUG00000010439	-	73	36.095	ENSELUG00000004378	rab9b	82	36.095
ENSELUG00000010439	-	89	39.196	ENSELUG00000023247	si:dkey-16l2.16	95	39.196
ENSELUG00000010439	-	71	34.375	ENSELUG00000018921	rab36	61	34.375
ENSELUG00000010439	-	71	49.045	ENSELUG00000012035	rab11al	73	49.045
ENSELUG00000010439	-	80	38.021	ENSELUG00000002575	rab33ba	78	38.021
ENSELUG00000010439	-	71	30.625	ENSELUG00000005597	rab34b	62	30.625
ENSELUG00000010439	-	81	42.135	ENSELUG00000022470	rab6bb	86	42.135
ENSELUG00000010439	-	58	30.303	ENSELUG00000010736	arl8a	61	30.328
ENSELUG00000010439	-	73	40.994	ENSELUG00000012801	rab13	81	40.994
ENSELUG00000010439	-	78	43.575	ENSELUG00000003805	rab18a	87	43.575
ENSELUG00000010439	-	89	43.350	ENSELUG00000021148	rab11bb	94	43.350
ENSELUG00000010439	-	73	42.857	ENSELUG00000014785	rab4a	76	42.857
ENSELUG00000010439	-	89	41.000	ENSELUG00000012060	rab25b	94	41.000
ENSELUG00000010439	-	76	42.857	ENSELUG00000023964	rab2a	79	42.857
ENSELUG00000010439	-	89	42.857	ENSELUG00000020948	-	90	49.573
ENSELUG00000010439	-	79	42.458	ENSELUG00000000175	zgc:100918	87	42.458
ENSELUG00000010439	-	89	43.284	ENSELUG00000002999	rab11a	93	43.284
ENSELUG00000010439	-	74	46.012	ENSELUG00000022997	rab30	81	46.012
ENSELUG00000010439	-	73	36.095	ENSELUG00000016622	rab9a	82	36.095
ENSELUG00000010439	-	73	40.373	ENSELUG00000020012	rab15	76	40.373
ENSELUG00000010439	-	76	33.140	ENSELUG00000018367	rheb	93	33.140
ENSELUG00000010439	-	89	42.857	ENSELUG00000000916	-	88	49.593
ENSELUG00000010439	-	83	35.676	ENSELUG00000005989	RAB15	86	35.676
ENSELUG00000010439	-	98	88.889	ENSELUG00000018516	rab5c	99	88.889
ENSELUG00000010439	-	89	42.929	ENSELUG00000012166	RAB1A	92	42.929
ENSELUG00000010439	-	58	30.303	ENSELUG00000003770	arl8a	65	30.303
ENSELUG00000010439	-	91	40.796	ENSELUG00000001257	rab6ba	94	40.796
ENSELUG00000010439	-	77	32.961	ENSELUG00000003058	KRAS	94	32.961
ENSELUG00000010439	-	74	42.945	ENSELUG00000011680	zgc:171927	77	42.945
ENSELUG00000010439	-	54	31.148	ENSELUG00000009390	arl8ba	62	31.148
ENSELUG00000010439	-	75	44.848	ENSELUG00000016450	rab18b	80	44.848
ENSELUG00000010439	-	76	42.262	ENSELUG00000009832	rab14	78	42.262
ENSELUG00000010439	-	78	43.605	ENSELUG00000008876	rab6a	83	43.605
ENSELUG00000010439	-	76	42.442	ENSELUG00000016682	-	83	42.442
ENSELUG00000010439	-	74	53.374	ENSELUG00000015343	rab22a	84	53.374
ENSELUG00000010439	-	71	30.000	ENSELUG00000022157	rab34a	61	30.000
ENSELUG00000010439	-	67	35.811	ENSELUG00000020788	rab23	68	36.875
ENSELUG00000010439	-	74	36.585	ENSELUG00000005304	rab39ba	77	36.585
ENSELUG00000010439	-	78	45.930	ENSELUG00000019240	-	88	45.930
ENSELUG00000010439	-	76	42.442	ENSELUG00000006539	RAB7A	83	42.442
ENSELUG00000010439	-	75	39.521	ENSELUG00000023120	-	78	39.521
ENSELUG00000010439	-	89	43.781	ENSELUG00000006604	rab25a	93	43.781
ENSELUG00000010439	-	74	36.585	ENSELUG00000013957	-	77	36.585
ENSELUG00000010439	-	89	43.077	ENSELUG00000015413	rab1ab	97	43.077
ENSELUG00000010439	-	82	31.522	ENSELUG00000013666	si:cabz01085950.1	91	31.522
ENSELUG00000010439	-	89	33.493	ENSELUG00000010345	rab42a	97	33.493
ENSELUG00000010439	-	89	42.564	ENSELUG00000023815	-	96	42.564
ENSELUG00000010439	-	79	31.034	ENSELUG00000006480	rheb	94	31.034
ENSELUG00000010439	-	81	36.316	ENSELUG00000007123	rab12	79	36.316
ENSELUG00000010439	-	95	34.112	ENSELUG00000021199	RAB9A	96	34.112
ENSELUG00000010439	-	79	33.831	ENSELUG00000011352	-	77	33.831
ENSELUG00000010439	-	75	31.138	ENSELUG00000004712	HRAS	87	31.138
ENSELUG00000010439	-	98	81.944	ENSELUG00000013436	rab5ab	99	81.944
ENSELUG00000010439	-	89	43.077	ENSELUG00000012428	-	96	43.077
ENSELUG00000010439	-	76	41.667	ENSELUG00000013571	-	78	41.667
ENSELUG00000010439	-	89	38.071	ENSELUG00000023972	rab35	96	38.071

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000010439	-	98	88.426	ENSG00000108774	RAB5C	100	95.968	Homo_sapiens
ENSELUG00000010439	-	100	89.545	ENSAPOG00000016864	rab5c	100	89.545	Acanthochromis_polyacanthus
ENSELUG00000010439	-	98	88.889	ENSAMEG00000006003	RAB5C	99	88.889	Ailuropoda_melanoleuca
ENSELUG00000010439	-	100	91.818	ENSACIG00000010896	rab5c	100	91.818	Amphilophus_citrinellus
ENSELUG00000010439	-	100	89.545	ENSAOCG00000016614	rab5c	100	89.545	Amphiprion_ocellaris
ENSELUG00000010439	-	98	89.302	ENSAPEG00000017868	-	99	89.302	Amphiprion_percula
ENSELUG00000010439	-	99	90.783	ENSATEG00000001937	rab5c	99	90.783	Anabas_testudineus
ENSELUG00000010439	-	93	89.756	ENSANAG00000025390	RAB5C	100	89.756	Aotus_nancymaae
ENSELUG00000010439	-	96	87.264	ENSACLG00000008615	-	100	86.036	Astatotilapia_calliptera
ENSELUG00000010439	-	100	90.909	ENSACLG00000002706	rab5c	100	90.909	Astatotilapia_calliptera
ENSELUG00000010439	-	100	91.403	ENSAMXG00000043717	rab5c	100	91.403	Astyanax_mexicanus
ENSELUG00000010439	-	95	89.423	ENSAMXG00000037267	-	99	89.423	Astyanax_mexicanus
ENSELUG00000010439	-	98	87.963	ENSBTAG00000006982	RAB5C	99	87.963	Bos_taurus
ENSELUG00000010439	-	98	76.959	WBGene00004268	rab-5	99	76.959	Caenorhabditis_elegans
ENSELUG00000010439	-	98	88.889	ENSCAFG00000015629	RAB5C	99	88.889	Canis_familiaris
ENSELUG00000010439	-	98	88.889	ENSCAFG00020013537	RAB5C	99	88.889	Canis_lupus_dingo
ENSELUG00000010439	-	98	87.963	ENSCHIG00000012960	RAB5C	99	87.963	Capra_hircus
ENSELUG00000010439	-	98	88.426	ENSTSYG00000030531	RAB5C	99	88.426	Carlito_syrichta
ENSELUG00000010439	-	98	87.963	ENSCCAG00000025940	RAB5C	99	87.963	Cebus_capucinus
ENSELUG00000010439	-	98	88.426	ENSCATG00000040873	RAB5C	99	88.426	Cercocebus_atys
ENSELUG00000010439	-	98	88.426	ENSCLAG00000016650	RAB5C	99	88.426	Chinchilla_lanigera
ENSELUG00000010439	-	81	94.382	ENSCHOG00000009886	RAB5C	100	94.382	Choloepus_hoffmanni
ENSELUG00000010439	-	100	74.091	ENSCING00000003340	-	100	74.091	Ciona_intestinalis
ENSELUG00000010439	-	99	74.449	ENSCSAVG00000000613	-	99	82.716	Ciona_savignyi
ENSELUG00000010439	-	98	88.426	ENSCGRG00001014226	Rab5c	99	88.426	Cricetulus_griseus_chok1gshd
ENSELUG00000010439	-	98	88.426	ENSCGRG00000007534	Rab5c	99	88.426	Cricetulus_griseus_crigri
ENSELUG00000010439	-	100	88.182	ENSCSEG00000017024	rab5c	100	88.182	Cynoglossus_semilaevis
ENSELUG00000010439	-	100	89.545	ENSCVAG00000009550	rab5c	100	89.545	Cyprinodon_variegatus
ENSELUG00000010439	-	98	87.963	ENSDNOG00000038853	RAB5C	99	87.963	Dasypus_novemcinctus
ENSELUG00000010439	-	98	89.352	ENSDORG00000006819	Rab5c	99	89.352	Dipodomys_ordii
ENSELUG00000010439	-	90	74.874	FBgn0014010	Rab5	89	74.874	Drosophila_melanogaster
ENSELUG00000010439	-	85	86.022	ENSEBUG00000014794	rab5c	88	86.022	Eptatretus_burgeri
ENSELUG00000010439	-	98	88.426	ENSEASG00005009281	RAB5C	99	88.426	Equus_asinus_asinus
ENSELUG00000010439	-	98	88.426	ENSECAG00000025054	RAB5C	99	88.426	Equus_caballus
ENSELUG00000010439	-	98	87.963	ENSEEUG00000002790	RAB5C	99	87.963	Erinaceus_europaeus
ENSELUG00000010439	-	98	87.963	ENSFCAG00000002148	RAB5C	99	87.963	Felis_catus
ENSELUG00000010439	-	98	87.500	ENSFDAG00000021541	RAB5C	99	87.500	Fukomys_damarensis
ENSELUG00000010439	-	100	90.455	ENSFHEG00000012117	rab5c	100	90.455	Fundulus_heteroclitus
ENSELUG00000010439	-	99	87.215	ENSFHEG00000015268	-	99	87.215	Fundulus_heteroclitus
ENSELUG00000010439	-	76	88.095	ENSGMOG00000001876	-	97	88.095	Gadus_morhua
ENSELUG00000010439	-	100	88.636	ENSGMOG00000015096	rab5c	100	88.636	Gadus_morhua
ENSELUG00000010439	-	95	87.560	ENSGAFG00000003642	-	99	85.586	Gambusia_affinis
ENSELUG00000010439	-	100	90.455	ENSGAFG00000000884	rab5c	100	90.455	Gambusia_affinis
ENSELUG00000010439	-	100	86.364	ENSGACG00000008659	rab5c	100	86.364	Gasterosteus_aculeatus
ENSELUG00000010439	-	98	88.426	ENSGGOG00000005472	RAB5C	99	88.426	Gorilla_gorilla
ENSELUG00000010439	-	96	87.264	ENSHBUG00000006823	-	100	86.036	Haplochromis_burtoni
ENSELUG00000010439	-	100	90.909	ENSHBUG00000002014	rab5c	100	90.909	Haplochromis_burtoni
ENSELUG00000010439	-	98	87.500	ENSHGLG00000012067	RAB5C	99	87.500	Heterocephalus_glaber_female
ENSELUG00000010439	-	100	90.950	ENSHCOG00000004662	rab5c	99	90.950	Hippocampus_comes
ENSELUG00000010439	-	95	80.000	ENSHCOG00000020238	-	99	78.539	Hippocampus_comes
ENSELUG00000010439	-	95	90.431	ENSIPUG00000020082	rab5c	100	90.090	Ictalurus_punctatus
ENSELUG00000010439	-	98	87.963	ENSSTOG00000006620	RAB5C	99	87.963	Ictidomys_tridecemlineatus
ENSELUG00000010439	-	98	88.426	ENSJJAG00000021181	Rab5c	99	88.426	Jaculus_jaculus
ENSELUG00000010439	-	100	90.000	ENSKMAG00000020038	rab5c	100	90.000	Kryptolebias_marmoratus
ENSELUG00000010439	-	99	87.215	ENSKMAG00000017417	-	99	87.215	Kryptolebias_marmoratus
ENSELUG00000010439	-	100	88.235	ENSLBEG00000010408	-	100	88.235	Labrus_bergylta
ENSELUG00000010439	-	100	90.909	ENSLBEG00000004128	rab5c	100	90.909	Labrus_bergylta
ENSELUG00000010439	-	98	90.278	ENSLOCG00000012566	rab5c	100	90.278	Lepisosteus_oculatus
ENSELUG00000010439	-	98	88.426	ENSMFAG00000039627	RAB5C	99	88.426	Macaca_fascicularis
ENSELUG00000010439	-	98	88.426	ENSMNEG00000000355	RAB5C	99	88.426	Macaca_nemestrina
ENSELUG00000010439	-	99	88.182	ENSMAMG00000016207	-	100	88.182	Mastacembelus_armatus
ENSELUG00000010439	-	100	90.000	ENSMAMG00000022322	rab5c	100	90.000	Mastacembelus_armatus
ENSELUG00000010439	-	100	90.909	ENSMZEG00005022735	rab5c	100	90.909	Maylandia_zebra
ENSELUG00000010439	-	96	87.264	ENSMZEG00005021090	-	100	86.036	Maylandia_zebra
ENSELUG00000010439	-	98	88.426	ENSMAUG00000015005	Rab5c	99	88.426	Mesocricetus_auratus
ENSELUG00000010439	-	98	88.426	ENSMICG00000041608	RAB5C	99	88.426	Microcebus_murinus
ENSELUG00000010439	-	98	88.426	ENSMOCG00000018531	-	99	88.426	Microtus_ochrogaster
ENSELUG00000010439	-	100	90.909	ENSMMOG00000020621	rab5c	100	90.909	Mola_mola
ENSELUG00000010439	-	99	85.909	ENSMALG00000022348	-	100	85.909	Monopterus_albus
ENSELUG00000010439	-	98	84.651	ENSMALG00000006052	rab5c	97	84.651	Monopterus_albus
ENSELUG00000010439	-	98	88.889	MGP_CAROLIEiJ_G0017184	Rab5c	99	88.889	Mus_caroli
ENSELUG00000010439	-	98	88.889	ENSMUSG00000019173	Rab5c	99	88.889	Mus_musculus
ENSELUG00000010439	-	98	88.889	MGP_PahariEiJ_G0018314	Rab5c	99	88.889	Mus_pahari
ENSELUG00000010439	-	98	88.889	MGP_SPRETEiJ_G0018027	Rab5c	99	88.889	Mus_spretus
ENSELUG00000010439	-	98	88.889	ENSMPUG00000010554	RAB5C	99	88.889	Mustela_putorius_furo
ENSELUG00000010439	-	98	88.426	ENSNGAG00000010286	Rab5c	99	88.426	Nannospalax_galili
ENSELUG00000010439	-	100	91.818	ENSNBRG00000018165	rab5c	100	91.818	Neolamprologus_brichardi
ENSELUG00000010439	-	96	87.264	ENSNBRG00000016922	-	100	86.036	Neolamprologus_brichardi
ENSELUG00000010439	-	81	87.640	ENSOPRG00000008255	RAB5C	100	87.640	Ochotona_princeps
ENSELUG00000010439	-	98	87.963	ENSODEG00000017920	RAB5C	99	87.963	Octodon_degus
ENSELUG00000010439	-	100	91.818	ENSONIG00000001113	rab5c	100	91.818	Oreochromis_niloticus
ENSELUG00000010439	-	99	89.401	ENSORLG00000003882	rab5c	99	89.401	Oryzias_latipes
ENSELUG00000010439	-	99	89.401	ENSORLG00020008388	rab5c	99	89.401	Oryzias_latipes_hni
ENSELUG00000010439	-	99	89.401	ENSORLG00015021900	rab5c	99	89.401	Oryzias_latipes_hsok
ENSELUG00000010439	-	99	89.401	ENSOMEG00000023078	rab5c	99	89.401	Oryzias_melastigma
ENSELUG00000010439	-	98	88.889	ENSOGAG00000009456	RAB5C	99	88.889	Otolemur_garnettii
ENSELUG00000010439	-	98	87.963	ENSOARG00000018768	RAB5C	99	87.963	Ovis_aries
ENSELUG00000010439	-	98	88.426	ENSPPAG00000037206	RAB5C	99	88.426	Pan_paniscus
ENSELUG00000010439	-	98	87.963	ENSPPRG00000005745	RAB5C	99	87.963	Panthera_pardus
ENSELUG00000010439	-	98	87.963	ENSPTIG00000008177	RAB5C	99	87.963	Panthera_tigris_altaica
ENSELUG00000010439	-	98	88.426	ENSPTRG00000009194	RAB5C	99	88.426	Pan_troglodytes
ENSELUG00000010439	-	98	85.185	ENSPKIG00000020112	-	99	85.185	Paramormyrops_kingsleyae
ENSELUG00000010439	-	98	87.500	ENSPKIG00000001237	-	99	87.500	Paramormyrops_kingsleyae
ENSELUG00000010439	-	100	87.273	ENSPMGG00000010792	rab5c	99	88.837	Periophthalmus_magnuspinnatus
ENSELUG00000010439	-	98	88.426	ENSPEMG00000017971	Rab5c	99	88.426	Peromyscus_maniculatus_bairdii
ENSELUG00000010439	-	99	76.498	ENSPMAG00000001399	rab5c	100	76.498	Petromyzon_marinus
ENSELUG00000010439	-	98	76.923	ENSPMAG00000000008	rab5c	99	76.923	Petromyzon_marinus
ENSELUG00000010439	-	98	74.537	ENSPMAG00000007867	rab5c	99	74.537	Petromyzon_marinus
ENSELUG00000010439	-	98	88.426	ENSPCIG00000020225	-	99	88.426	Phascolarctos_cinereus
ENSELUG00000010439	-	100	90.455	ENSPLAG00000004790	rab5c	100	90.455	Poecilia_latipinna
ENSELUG00000010439	-	99	86.758	ENSPLAG00000016333	-	100	86.758	Poecilia_latipinna
ENSELUG00000010439	-	100	90.455	ENSPMEG00000011336	rab5c	100	90.455	Poecilia_mexicana
ENSELUG00000010439	-	96	87.793	ENSPMEG00000012614	-	100	86.099	Poecilia_mexicana
ENSELUG00000010439	-	100	90.455	ENSPREG00000010146	rab5c	100	90.455	Poecilia_reticulata
ENSELUG00000010439	-	85	90.476	ENSPREG00000022167	-	89	91.803	Poecilia_reticulata
ENSELUG00000010439	-	98	88.426	ENSPPYG00000008398	RAB5C	99	88.426	Pongo_abelii
ENSELUG00000010439	-	98	87.037	ENSPCAG00000016412	RAB5C	99	87.037	Procavia_capensis
ENSELUG00000010439	-	98	87.963	ENSPCOG00000026327	RAB5C	99	87.963	Propithecus_coquereli
ENSELUG00000010439	-	98	88.426	ENSPVAG00000003867	RAB5C	99	88.426	Pteropus_vampyrus
ENSELUG00000010439	-	96	87.264	ENSPNYG00000015851	-	100	86.036	Pundamilia_nyererei
ENSELUG00000010439	-	100	90.909	ENSPNYG00000010615	rab5c	100	90.909	Pundamilia_nyererei
ENSELUG00000010439	-	100	91.403	ENSPNAG00000028138	rab5c	100	91.403	Pygocentrus_nattereri
ENSELUG00000010439	-	95	87.081	ENSPNAG00000002218	-	98	87.081	Pygocentrus_nattereri
ENSELUG00000010439	-	98	88.426	ENSRNOG00000018568	Rab5c	99	88.426	Rattus_norvegicus
ENSELUG00000010439	-	98	88.426	ENSRBIG00000031376	RAB5C	99	88.426	Rhinopithecus_bieti
ENSELUG00000010439	-	98	88.426	ENSRROG00000032895	RAB5C	99	88.426	Rhinopithecus_roxellana
ENSELUG00000010439	-	98	87.963	ENSSBOG00000032552	-	99	87.963	Saimiri_boliviensis_boliviensis
ENSELUG00000010439	-	98	88.889	ENSSHAG00000005267	-	99	88.889	Sarcophilus_harrisii
ENSELUG00000010439	-	100	85.000	ENSSFOG00015009988	-	100	85.000	Scleropages_formosus
ENSELUG00000010439	-	95	90.431	ENSSMAG00000007323	rab5c	100	89.545	Scophthalmus_maximus
ENSELUG00000010439	-	100	90.455	ENSSDUG00000023008	rab5c	100	90.455	Seriola_dumerili
ENSELUG00000010439	-	100	89.545	ENSSLDG00000017771	rab5c	100	89.545	Seriola_lalandi_dorsalis
ENSELUG00000010439	-	98	88.426	ENSSPUG00000012950	-	99	88.426	Sphenodon_punctatus
ENSELUG00000010439	-	100	91.364	ENSSPAG00000006436	rab5c	100	91.364	Stegastes_partitus
ENSELUG00000010439	-	98	87.963	ENSSSCG00000032467	RAB5C	99	87.963	Sus_scrofa
ENSELUG00000010439	-	100	90.000	ENSTRUG00000015590	rab5c	100	90.000	Takifugu_rubripes
ENSELUG00000010439	-	96	91.469	ENSTNIG00000011711	rab5c	95	91.469	Tetraodon_nigroviridis
ENSELUG00000010439	-	98	88.426	ENSTBEG00000007092	RAB5C	99	88.426	Tupaia_belangeri
ENSELUG00000010439	-	98	87.500	ENSTTRG00000006673	RAB5C	99	87.500	Tursiops_truncatus
ENSELUG00000010439	-	98	88.889	ENSUAMG00000024343	RAB5C	99	88.889	Ursus_americanus
ENSELUG00000010439	-	98	88.889	ENSUMAG00000023270	RAB5C	99	88.889	Ursus_maritimus
ENSELUG00000010439	-	95	88.038	ENSXCOG00000006300	-	99	86.036	Xiphophorus_couchianus
ENSELUG00000010439	-	100	90.455	ENSXCOG00000016788	rab5c	100	90.455	Xiphophorus_couchianus
ENSELUG00000010439	-	99	86.301	ENSXMAG00000022179	-	100	86.301	Xiphophorus_maculatus
ENSELUG00000010439	-	100	90.455	ENSXMAG00000003266	rab5c	100	90.455	Xiphophorus_maculatus