EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000010440 (Gene tree)
Gene ID: 105029878
Gene Symbol: -
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 22900 bases
Position: chrLG20:41265580-41288479
Accession: 105029878
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000009917	ResIII	PF04851.15	2.3e-05	1	1
ENSELUP00000009921	ResIII	PF04851.15	2.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000003021	-	3075	XM_020041408	ENSELUP00000009917	1024 (aa)	XP_019896967	UPI0009733517
ENSELUT00000002999	-	3126	XM_013131116	ENSELUP00000009921	1041 (aa)	XP_012986570	UPI00057625F1

Gene Model

Click here to download ENSELUG00000010440's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000010440's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000010440	-	99	48.042	ENSG00000138375	SMARCAL1	99	68.323	Homo_sapiens
ENSELUG00000010440	-	99	65.011	ENSAPOG00000020156	SMARCAL1	99	73.529	Acanthochromis_polyacanthus
ENSELUG00000010440	-	72	71.754	ENSACIG00000001500	smarcal1	84	77.964	Amphilophus_citrinellus
ENSELUG00000010440	-	96	73.585	ENSAOCG00000014266	SMARCAL1	99	75.599	Amphiprion_ocellaris
ENSELUG00000010440	-	99	71.447	ENSAPEG00000015861	SMARCAL1	99	73.262	Amphiprion_percula
ENSELUG00000010440	-	100	68.561	ENSATEG00000020624	SMARCAL1	100	68.319	Anabas_testudineus
ENSELUG00000010440	-	72	61.473	ENSAPLG00000009864	SMARCAL1	71	63.372	Anas_platyrhynchos
ENSELUG00000010440	-	80	77.419	ENSACAG00000004612	SMARCAL1	77	58.838	Anolis_carolinensis
ENSELUG00000010440	-	69	75.208	ENSACLG00000015990	SMARCAL1	79	76.017	Astatotilapia_calliptera
ENSELUG00000010440	-	100	66.438	ENSAMXG00000003350	smarcal1	99	66.438	Astyanax_mexicanus
ENSELUG00000010440	-	78	60.207	ENSCPBG00000013599	SMARCAL1	74	63.793	Chrysemys_picta_bellii
ENSELUG00000010440	-	63	47.500	ENSCING00000009308	-	100	47.500	Ciona_intestinalis
ENSELUG00000010440	-	95	71.258	ENSCSEG00000010785	SMARCAL1	99	74.893	Cynoglossus_semilaevis
ENSELUG00000010440	-	95	70.053	ENSCVAG00000018780	SMARCAL1	82	70.516	Cyprinodon_variegatus
ENSELUG00000010440	-	50	56.597	ENSEBUG00000011906	SMARCAL1	72	56.597	Eptatretus_burgeri
ENSELUG00000010440	-	66	63.028	ENSFALG00000003981	SMARCAL1	71	63.028	Ficedula_albicollis
ENSELUG00000010440	-	95	70.588	ENSFHEG00000008380	SMARCAL1	97	71.623	Fundulus_heteroclitus
ENSELUG00000010440	-	71	63.333	ENSGALG00000011475	RPL37A	71	63.333	Gallus_gallus
ENSELUG00000010440	-	65	73.070	ENSGACG00000006073	SMARCAL1	100	77.095	Gasterosteus_aculeatus
ENSELUG00000010440	-	63	64.885	ENSGAGG00000015660	SMARCAL1	71	64.885	Gopherus_agassizii
ENSELUG00000010440	-	73	73.280	ENSHBUG00000002973	smarcal1	79	76.157	Haplochromis_burtoni
ENSELUG00000010440	-	66	74.020	ENSHCOG00000017921	smarcal1	81	74.669	Hippocampus_comes
ENSELUG00000010440	-	67	74.249	ENSKMAG00000012023	SMARCAL1	80	74.462	Kryptolebias_marmoratus
ENSELUG00000010440	-	80	73.913	ENSLBEG00000003493	smarcal1	75	77.551	Labrus_bergylta
ENSELUG00000010440	-	68	72.230	ENSLBEG00000022915	smarcal1	86	75.455	Labrus_bergylta
ENSELUG00000010440	-	75	72.727	ENSLACG00000010974	SMARCAL1	76	57.923	Latimeria_chalumnae
ENSELUG00000010440	-	80	65.704	ENSLOCG00000009637	smarcal1	78	75.267	Lepisosteus_oculatus
ENSELUG00000010440	-	72	74.899	ENSMAMG00000000828	SMARCAL1	79	77.986	Mastacembelus_armatus
ENSELUG00000010440	-	69	75.069	ENSMZEG00005007660	SMARCAL1	79	75.877	Maylandia_zebra
ENSELUG00000010440	-	76	60.590	ENSMGAG00000011658	SMARCAL1	72	64.474	Meleagris_gallopavo
ENSELUG00000010440	-	78	67.068	ENSMMOG00000003842	smarcal1	81	72.340	Mola_mola
ENSELUG00000010440	-	94	50.494	ENSMODG00000015544	SMARCAL1	74	59.724	Monodelphis_domestica
ENSELUG00000010440	-	67	74.501	ENSNBRG00000016273	smarcal1	85	77.458	Neolamprologus_brichardi
ENSELUG00000010440	-	61	64.006	ENSMEUG00000004395	SMARCAL1	73	63.482	Notamacropus_eugenii
ENSELUG00000010440	-	72	76.676	ENSONIG00000009036	smarcal1	100	76.676	Oreochromis_niloticus
ENSELUG00000010440	-	95	71.049	ENSORLG00000016455	SMARCAL1	78	74.395	Oryzias_latipes
ENSELUG00000010440	-	95	71.049	ENSORLG00020001610	SMARCAL1	78	74.253	Oryzias_latipes_hni
ENSELUG00000010440	-	95	71.049	ENSORLG00015001865	SMARCAL1	78	74.395	Oryzias_latipes_hsok
ENSELUG00000010440	-	96	70.079	ENSOMEG00000001845	smarcal1	82	73.315	Oryzias_melastigma
ENSELUG00000010440	-	100	68.538	ENSPMGG00000019092	SMARCAL1	82	68.956	Periophthalmus_magnuspinnatus
ENSELUG00000010440	-	99	48.776	ENSPCIG00000022514	SMARCAL1	99	48.351	Phascolarctos_cinereus
ENSELUG00000010440	-	73	70.681	ENSPFOG00000000560	SMARCAL1	80	73.464	Poecilia_formosa
ENSELUG00000010440	-	97	70.681	ENSPMEG00000018146	SMARCAL1	80	73.464	Poecilia_mexicana
ENSELUG00000010440	-	100	70.771	ENSPNAG00000014900	smarcal1	80	71.903	Pygocentrus_nattereri
ENSELUG00000010440	-	99	55.659	ENSSHAG00000013538	SMARCAL1	78	55.659	Sarcophilus_harrisii
ENSELUG00000010440	-	100	69.938	ENSSMAG00000010427	SMARCAL1	100	73.298	Scophthalmus_maximus
ENSELUG00000010440	-	96	72.343	ENSSDUG00000017470	SMARCAL1	96	71.959	Seriola_dumerili
ENSELUG00000010440	-	100	69.649	ENSSLDG00000007224	SMARCAL1	100	69.045	Seriola_lalandi_dorsalis
ENSELUG00000010440	-	99	51.210	ENSSPUG00000015369	SMARCAL1	72	63.636	Sphenodon_punctatus
ENSELUG00000010440	-	66	75.832	ENSSPAG00000003742	smarcal1	87	75.543	Stegastes_partitus
ENSELUG00000010440	-	65	58.944	ENSSSCG00000035501	SMARCAL1	75	59.064	Sus_scrofa
ENSELUG00000010440	-	66	62.059	ENSTGUG00000005079	SMARCAL1	99	62.059	Taeniopygia_guttata
ENSELUG00000010440	-	67	67.719	ENSTRUG00000010701	SMARCAL1	79	68.215	Takifugu_rubripes
ENSELUG00000010440	-	70	50.875	ENSTTRG00000009001	SMARCAL1	74	51.393	Tursiops_truncatus
ENSELUG00000010440	-	83	75.000	ENSXETG00000000465	smarcal1	73	66.908	Xenopus_tropicalis