EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000010515 (Gene tree)
Gene ID: 105028962
Gene Symbol: smarca1
Alias: si:dkey-148b12.1
Full Name: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 27949 bases
Position: chrLG07:15473525-15501473
Accession: 105028962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000009942	ResIII	PF04851.15	1.5e-11	1	1
ENSELUP00000009967	ResIII	PF04851.15	1.7e-11	1	1
ENSELUP00000009942	DEAD	PF00270.29	3.4e-06	1	1
ENSELUP00000009967	DEAD	PF00270.29	4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000002923	-	3881	XM_010902030	ENSELUP00000009967	1021 (aa)	XP_010900332	UPI0005768E7B
ENSELUT00000002964	-	3668	XM_010902031	ENSELUP00000009942	950 (aa)	XP_010900333	UPI00057799CA

Gene Model

Click here to download ENSELUG00000010515's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000010515's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000010515	smarca1	54	39.363	ENSELUG00000014909	hells	69	39.363
ENSELUG00000010515	smarca1	56	44.503	ENSELUG00000017981	chd2	52	34.760
ENSELUG00000010515	smarca1	57	38.798	ENSELUG00000016844	chd1l	51	38.798
ENSELUG00000010515	smarca1	95	84.086	ENSELUG00000014653	SMARCA5	99	82.922

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000010515	smarca1	98	86.927	ENSG00000102038	SMARCA1	94	86.540	Homo_sapiens
ENSELUG00000010515	smarca1	95	85.377	ENSAPOG00000016035	smarca5	98	84.556	Acanthochromis_polyacanthus
ENSELUG00000010515	smarca1	97	86.108	ENSAMEG00000015218	SMARCA1	93	85.828	Ailuropoda_melanoleuca
ENSELUG00000010515	smarca1	87	85.677	ENSACIG00000016982	smarca5	99	84.676	Amphilophus_citrinellus
ENSELUG00000010515	smarca1	95	85.377	ENSAOCG00000015578	smarca5	94	84.292	Amphiprion_ocellaris
ENSELUG00000010515	smarca1	95	85.377	ENSAPEG00000011117	smarca5	99	84.634	Amphiprion_percula
ENSELUG00000010515	smarca1	95	85.294	ENSATEG00000012894	smarca5	93	85.458	Anabas_testudineus
ENSELUG00000010515	smarca1	96	90.856	ENSAPLG00000013149	SMARCA1	99	90.408	Anas_platyrhynchos
ENSELUG00000010515	smarca1	99	89.586	ENSACAG00000011376	SMARCA1	97	89.314	Anolis_carolinensis
ENSELUG00000010515	smarca1	98	81.655	ENSANAG00000023098	SMARCA1	94	81.655	Aotus_nancymaae
ENSELUG00000010515	smarca1	95	85.529	ENSACLG00000025356	smarca5	94	84.426	Astatotilapia_calliptera
ENSELUG00000010515	smarca1	92	94.332	ENSAMXG00000011227	smarca1	100	94.332	Astyanax_mexicanus
ENSELUG00000010515	smarca1	95	85.142	ENSAMXG00000005709	smarca5	94	84.189	Astyanax_mexicanus
ENSELUG00000010515	smarca1	98	86.468	ENSBTAG00000002292	SMARCA1	92	86.256	Bos_taurus
ENSELUG00000010515	smarca1	98	62.500	WBGene00002169	isw-1	95	62.652	Caenorhabditis_elegans
ENSELUG00000010515	smarca1	98	86.927	ENSCJAG00000002868	SMARCA1	94	86.540	Callithrix_jacchus
ENSELUG00000010515	smarca1	98	77.255	ENSCAFG00000018673	SMARCA1	99	79.157	Canis_familiaris
ENSELUG00000010515	smarca1	98	86.697	ENSCAFG00020001751	SMARCA1	94	86.341	Canis_lupus_dingo
ENSELUG00000010515	smarca1	98	86.583	ENSCHIG00000009837	SMARCA1	94	86.241	Capra_hircus
ENSELUG00000010515	smarca1	98	86.927	ENSTSYG00000004240	SMARCA1	96	87.280	Carlito_syrichta
ENSELUG00000010515	smarca1	98	85.194	ENSCPOG00000013601	SMARCA1	95	85.035	Cavia_porcellus
ENSELUG00000010515	smarca1	98	83.749	ENSCCAG00000030817	SMARCA1	94	83.749	Cebus_capucinus
ENSELUG00000010515	smarca1	98	85.747	ENSCATG00000015921	SMARCA1	92	87.747	Cercocebus_atys
ENSELUG00000010515	smarca1	98	85.550	ENSCLAG00000002171	SMARCA1	96	84.350	Chinchilla_lanigera
ENSELUG00000010515	smarca1	98	86.927	ENSCSAG00000008460	SMARCA1	94	86.540	Chlorocebus_sabaeus
ENSELUG00000010515	smarca1	98	89.989	ENSCPBG00000001146	SMARCA1	95	89.662	Chrysemys_picta_bellii
ENSELUG00000010515	smarca1	97	73.788	ENSCING00000004110	swi/snf	97	72.736	Ciona_intestinalis
ENSELUG00000010515	smarca1	99	71.330	ENSCSAVG00000004620	-	99	75.140	Ciona_savignyi
ENSELUG00000010515	smarca1	98	87.041	ENSCANG00000007183	SMARCA1	94	86.640	Colobus_angolensis_palliatus
ENSELUG00000010515	smarca1	98	86.306	ENSCGRG00001010776	Smarca1	96	84.843	Cricetulus_griseus_chok1gshd
ENSELUG00000010515	smarca1	96	85.830	ENSCGRG00000015301	Smarca1	96	86.186	Cricetulus_griseus_crigri
ENSELUG00000010515	smarca1	95	84.906	ENSCSEG00000000328	smarca5	94	84.016	Cynoglossus_semilaevis
ENSELUG00000010515	smarca1	95	84.824	ENSCVAG00000008668	smarca5	99	84.298	Cyprinodon_variegatus
ENSELUG00000010515	smarca1	95	84.788	ENSDARG00000052348	smarca5	94	83.881	Danio_rerio
ENSELUG00000010515	smarca1	100	91.118	ENSDARG00000012776	smarca1	100	90.883	Danio_rerio
ENSELUG00000010515	smarca1	96	87.001	ENSDNOG00000004315	SMARCA1	92	87.292	Dasypus_novemcinctus
ENSELUG00000010515	smarca1	98	85.060	ENSDORG00000009270	Smarca1	94	85.396	Dipodomys_ordii
ENSELUG00000010515	smarca1	94	74.407	FBgn0011604	Iswi	95	74.112	Drosophila_melanogaster
ENSELUG00000010515	smarca1	80	85.714	ENSETEG00000017426	SMARCA1	83	85.714	Echinops_telfairi
ENSELUG00000010515	smarca1	99	79.608	ENSEBUG00000001239	smarca5	100	79.608	Eptatretus_burgeri
ENSELUG00000010515	smarca1	97	82.421	ENSEASG00005008218	SMARCA1	100	83.266	Equus_asinus_asinus
ENSELUG00000010515	smarca1	98	86.583	ENSECAG00000012106	SMARCA1	94	86.241	Equus_caballus
ENSELUG00000010515	smarca1	78	88.411	ENSEEUG00000014927	SMARCA1	81	88.411	Erinaceus_europaeus
ENSELUG00000010515	smarca1	99	85.991	ENSFCAG00000018496	SMARCA1	95	85.728	Felis_catus
ENSELUG00000010515	smarca1	90	91.148	ENSFALG00000000209	SMARCA1	98	91.148	Ficedula_albicollis
ENSELUG00000010515	smarca1	97	85.085	ENSFDAG00000009818	SMARCA1	96	85.423	Fukomys_damarensis
ENSELUG00000010515	smarca1	96	83.759	ENSFHEG00000007687	smarca5	93	83.759	Fundulus_heteroclitus
ENSELUG00000010515	smarca1	96	90.061	ENSGALG00000008431	SMARCA1	97	90.061	Gallus_gallus
ENSELUG00000010515	smarca1	96	84.270	ENSGAFG00000017731	smarca5	94	84.270	Gambusia_affinis
ENSELUG00000010515	smarca1	95	91.340	ENSGAGG00000023575	SMARCA1	99	90.825	Gopherus_agassizii
ENSELUG00000010515	smarca1	78	81.831	ENSGGOG00000012841	-	94	82.102	Gorilla_gorilla
ENSELUG00000010515	smarca1	98	85.436	ENSHGLG00000003080	SMARCA1	94	85.244	Heterocephalus_glaber_female
ENSELUG00000010515	smarca1	98	84.876	ENSHGLG00100001102	SMARCA1	100	84.876	Heterocephalus_glaber_male
ENSELUG00000010515	smarca1	95	85.059	ENSHCOG00000005458	smarca5	94	83.963	Hippocampus_comes
ENSELUG00000010515	smarca1	100	92.144	ENSIPUG00000016905	Smarca1	99	92.988	Ictalurus_punctatus
ENSELUG00000010515	smarca1	99	82.340	ENSIPUG00000005229	SMARCA5	99	82.289	Ictalurus_punctatus
ENSELUG00000010515	smarca1	98	86.812	ENSSTOG00000014524	SMARCA1	95	87.232	Ictidomys_tridecemlineatus
ENSELUG00000010515	smarca1	98	85.017	ENSJJAG00000002593	Smarca1	95	84.881	Jaculus_jaculus
ENSELUG00000010515	smarca1	95	85.059	ENSKMAG00000003777	smarca5	94	83.861	Kryptolebias_marmoratus
ENSELUG00000010515	smarca1	90	84.957	ENSLBEG00000013295	SMARCA1	100	85.624	Labrus_bergylta
ENSELUG00000010515	smarca1	96	83.657	ENSLBEG00000018112	smarca5	94	83.657	Labrus_bergylta
ENSELUG00000010515	smarca1	99	88.901	ENSLACG00000016697	SMARCA1	99	88.813	Latimeria_chalumnae
ENSELUG00000010515	smarca1	98	94.259	ENSLOCG00000014591	smarca1	100	91.547	Lepisosteus_oculatus
ENSELUG00000010515	smarca1	98	85.714	ENSLAFG00000000896	SMARCA1	99	85.487	Loxodonta_africana
ENSELUG00000010515	smarca1	98	86.927	ENSMFAG00000002117	SMARCA1	96	87.140	Macaca_fascicularis
ENSELUG00000010515	smarca1	98	85.747	ENSMMUG00000008818	SMARCA1	97	88.417	Macaca_mulatta
ENSELUG00000010515	smarca1	97	86.768	ENSMNEG00000041768	SMARCA1	96	87.140	Macaca_nemestrina
ENSELUG00000010515	smarca1	98	86.812	ENSMLEG00000043198	SMARCA1	94	86.441	Mandrillus_leucophaeus
ENSELUG00000010515	smarca1	95	85.294	ENSMAMG00000014294	smarca5	94	84.221	Mastacembelus_armatus
ENSELUG00000010515	smarca1	95	85.529	ENSMZEG00005009369	smarca5	94	84.426	Maylandia_zebra
ENSELUG00000010515	smarca1	98	89.027	ENSMGAG00000007042	SMARCA1	99	88.823	Meleagris_gallopavo
ENSELUG00000010515	smarca1	95	86.536	ENSMAUG00000008133	Smarca1	91	86.911	Mesocricetus_auratus
ENSELUG00000010515	smarca1	99	86.333	ENSMICG00000015768	SMARCA1	98	84.541	Microcebus_murinus
ENSELUG00000010515	smarca1	97	85.698	ENSMOCG00000009464	Smarca1	94	85.614	Microtus_ochrogaster
ENSELUG00000010515	smarca1	94	84.772	ENSMMOG00000005547	smarca5	98	82.377	Mola_mola
ENSELUG00000010515	smarca1	99	88.196	ENSMODG00000013187	-	98	88.195	Monodelphis_domestica
ENSELUG00000010515	smarca1	95	84.706	ENSMALG00000002081	smarca5	96	83.992	Monopterus_albus
ENSELUG00000010515	smarca1	98	86.041	MGP_CAROLIEiJ_G0033034	Smarca1	94	85.871	Mus_caroli
ENSELUG00000010515	smarca1	98	86.041	ENSMUSG00000031099	Smarca1	96	84.917	Mus_musculus
ENSELUG00000010515	smarca1	98	86.270	MGP_PahariEiJ_G0031579	Smarca1	96	84.819	Mus_pahari
ENSELUG00000010515	smarca1	98	86.041	MGP_SPRETEiJ_G0034192	Smarca1	96	84.917	Mus_spretus
ENSELUG00000010515	smarca1	98	85.294	ENSMPUG00000017423	SMARCA1	89	85.123	Mustela_putorius_furo
ENSELUG00000010515	smarca1	99	83.969	ENSMLUG00000029614	SMARCA1	98	82.303	Myotis_lucifugus
ENSELUG00000010515	smarca1	96	86.877	ENSNGAG00000006492	Smarca1	93	86.137	Nannospalax_galili
ENSELUG00000010515	smarca1	95	85.647	ENSNBRG00000004463	smarca5	98	84.529	Neolamprologus_brichardi
ENSELUG00000010515	smarca1	98	84.842	ENSNLEG00000015179	SMARCA1	96	86.646	Nomascus_leucogenys
ENSELUG00000010515	smarca1	92	80.733	ENSMEUG00000008819	SMARCA1	99	80.733	Notamacropus_eugenii
ENSELUG00000010515	smarca1	97	83.741	ENSODEG00000012163	SMARCA1	95	84.048	Octodon_degus
ENSELUG00000010515	smarca1	95	85.647	ENSONIG00000009993	smarca5	94	84.529	Oreochromis_niloticus
ENSELUG00000010515	smarca1	95	91.459	ENSOANG00000002862	SMARCA1	99	90.825	Ornithorhynchus_anatinus
ENSELUG00000010515	smarca1	98	86.927	ENSOCUG00000001047	SMARCA1	96	85.728	Oryctolagus_cuniculus
ENSELUG00000010515	smarca1	95	85.647	ENSORLG00000021998	smarca5	94	84.734	Oryzias_latipes
ENSELUG00000010515	smarca1	95	85.647	ENSORLG00020017679	smarca5	94	84.734	Oryzias_latipes_hni
ENSELUG00000010515	smarca1	95	85.647	ENSORLG00015017210	smarca5	94	84.734	Oryzias_latipes_hsok
ENSELUG00000010515	smarca1	95	85.882	ENSOMEG00000000086	smarca5	94	84.939	Oryzias_melastigma
ENSELUG00000010515	smarca1	96	86.405	ENSOGAG00000004399	SMARCA1	92	87.024	Otolemur_garnettii
ENSELUG00000010515	smarca1	96	87.559	ENSOARG00000014638	SMARCA1	100	87.080	Ovis_aries
ENSELUG00000010515	smarca1	98	86.927	ENSPPAG00000034647	SMARCA1	94	86.540	Pan_paniscus
ENSELUG00000010515	smarca1	99	86.105	ENSPPRG00000008929	SMARCA1	95	85.828	Panthera_pardus
ENSELUG00000010515	smarca1	98	84.477	ENSPTIG00000000915	SMARCA1	98	84.412	Panthera_tigris_altaica
ENSELUG00000010515	smarca1	98	86.927	ENSPTRG00000049876	SMARCA1	92	87.747	Pan_troglodytes
ENSELUG00000010515	smarca1	98	86.927	ENSPANG00000003871	SMARCA1	94	86.540	Papio_anubis
ENSELUG00000010515	smarca1	98	90.490	ENSPKIG00000013411	smarca1	99	90.490	Paramormyrops_kingsleyae
ENSELUG00000010515	smarca1	98	89.593	ENSPSIG00000010101	SMARCA1	99	91.031	Pelodiscus_sinensis
ENSELUG00000010515	smarca1	96	86.775	ENSPEMG00000017503	Smarca1	92	87.150	Peromyscus_maniculatus_bairdii
ENSELUG00000010515	smarca1	98	90.482	ENSPCIG00000015460	SMARCA1	98	90.090	Phascolarctos_cinereus
ENSELUG00000010515	smarca1	95	85.176	ENSPFOG00000007649	smarca5	94	84.324	Poecilia_formosa
ENSELUG00000010515	smarca1	95	85.176	ENSPLAG00000003363	smarca5	94	84.324	Poecilia_latipinna
ENSELUG00000010515	smarca1	95	85.294	ENSPMEG00000019849	smarca5	94	84.426	Poecilia_mexicana
ENSELUG00000010515	smarca1	95	85.294	ENSPREG00000023250	smarca5	94	84.426	Poecilia_reticulata
ENSELUG00000010515	smarca1	98	83.848	ENSPPYG00000020703	SMARCA1	94	83.848	Pongo_abelii
ENSELUG00000010515	smarca1	86	77.778	ENSPCOG00000020722	SMARCA1	93	83.407	Propithecus_coquereli
ENSELUG00000010515	smarca1	91	86.684	ENSPVAG00000003805	SMARCA1	93	79.511	Pteropus_vampyrus
ENSELUG00000010515	smarca1	62	86.704	ENSPNYG00000012299	smarca5	89	86.704	Pundamilia_nyererei
ENSELUG00000010515	smarca1	98	86.306	ENSRNOG00000003762	Smarca1	96	85.039	Rattus_norvegicus
ENSELUG00000010515	smarca1	98	87.041	ENSRROG00000034167	SMARCA1	94	86.640	Rhinopithecus_roxellana
ENSELUG00000010515	smarca1	96	87.911	ENSSBOG00000020641	SMARCA1	100	87.386	Saimiri_boliviensis_boliviensis
ENSELUG00000010515	smarca1	95	84.716	ENSSHAG00000013518	SMARCA1	99	84.552	Sarcophilus_harrisii
ENSELUG00000010515	smarca1	100	93.498	ENSSFOG00015009043	smarca1	100	93.151	Scleropages_formosus
ENSELUG00000010515	smarca1	96	84.065	ENSSFOG00015016794	smarca5	99	84.314	Scleropages_formosus
ENSELUG00000010515	smarca1	95	84.824	ENSSMAG00000004801	smarca5	94	83.811	Scophthalmus_maximus
ENSELUG00000010515	smarca1	95	85.059	ENSSDUG00000020690	smarca5	94	84.016	Seriola_dumerili
ENSELUG00000010515	smarca1	95	85.059	ENSSLDG00000025190	smarca5	94	84.016	Seriola_lalandi_dorsalis
ENSELUG00000010515	smarca1	80	88.612	ENSSARG00000000842	SMARCA1	83	88.612	Sorex_araneus
ENSELUG00000010515	smarca1	95	90.442	ENSSPUG00000000590	SMARCA1	95	89.596	Sphenodon_punctatus
ENSELUG00000010515	smarca1	95	85.495	ENSSPAG00000002894	smarca5	96	84.775	Stegastes_partitus
ENSELUG00000010515	smarca1	96	87.041	ENSSSCG00000012649	SMARCA1	94	86.988	Sus_scrofa
ENSELUG00000010515	smarca1	96	90.739	ENSTGUG00000003899	-	99	90.408	Taeniopygia_guttata
ENSELUG00000010515	smarca1	95	85.142	ENSTRUG00000014094	smarca5	94	84.086	Takifugu_rubripes
ENSELUG00000010515	smarca1	95	83.608	ENSTNIG00000017717	smarca5	93	82.854	Tetraodon_nigroviridis
ENSELUG00000010515	smarca1	96	80.564	ENSTBEG00000014973	SMARCA1	97	80.821	Tupaia_belangeri
ENSELUG00000010515	smarca1	94	84.070	ENSTTRG00000006168	SMARCA1	96	84.293	Tursiops_truncatus
ENSELUG00000010515	smarca1	97	86.754	ENSUAMG00000020201	SMARCA1	93	86.754	Ursus_americanus
ENSELUG00000010515	smarca1	96	83.003	ENSUMAG00000004073	SMARCA1	98	86.364	Ursus_maritimus
ENSELUG00000010515	smarca1	75	89.968	ENSVPAG00000010492	-	77	91.409	Vicugna_pacos
ENSELUG00000010515	smarca1	98	86.697	ENSVVUG00000008878	SMARCA1	98	88.547	Vulpes_vulpes
ENSELUG00000010515	smarca1	98	89.690	ENSXETG00000001526	smarca1	99	89.690	Xenopus_tropicalis
ENSELUG00000010515	smarca1	96	84.168	ENSXCOG00000011170	smarca5	97	84.168	Xiphophorus_couchianus
ENSELUG00000010515	smarca1	96	84.168	ENSXMAG00000009678	smarca5	97	85.449	Xiphophorus_maculatus