EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000011050 (Gene tree)
Gene ID: 105031343
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 7728 bases
Position: chrLG16:2176493-2184220
Accession: 105031343
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000032946	Smg4_UPF3	PF03467.15	4.7e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000001922	-	1383	XM_010905693	ENSELUP00000032946	460 (aa)	XP_010903995	-

Gene Model

Click here to download ENSELUG00000011050's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03013	RNA transport	KEGG
els03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000011050's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000011050	upf3a	91	55.120	ENSG00000169062	UPF3A	95	55.870	Homo_sapiens
ENSELUG00000011050	upf3a	99	83.333	ENSAPOG00000013484	upf3a	98	83.514	Acanthochromis_polyacanthus
ENSELUG00000011050	upf3a	85	60.197	ENSAMEG00000004259	UPF3A	87	59.360	Ailuropoda_melanoleuca
ENSELUG00000011050	upf3a	99	80.538	ENSACIG00000020468	upf3a	99	80.705	Amphilophus_citrinellus
ENSELUG00000011050	upf3a	86	46.119	ENSACIG00000013582	upf3b	92	47.816	Amphilophus_citrinellus
ENSELUG00000011050	upf3a	99	83.766	ENSAOCG00000020784	upf3a	98	83.948	Amphiprion_ocellaris
ENSELUG00000011050	upf3a	83	53.301	ENSAOCG00000000706	upf3b	87	51.951	Amphiprion_ocellaris
ENSELUG00000011050	upf3a	99	83.766	ENSAPEG00000003519	upf3a	98	83.948	Amphiprion_percula
ENSELUG00000011050	upf3a	99	83.983	ENSATEG00000005843	upf3a	98	83.983	Anabas_testudineus
ENSELUG00000011050	upf3a	84	51.422	ENSATEG00000018742	upf3b	89	52.969	Anabas_testudineus
ENSELUG00000011050	upf3a	87	64.423	ENSACAG00000001540	UPF3A	98	64.423	Anolis_carolinensis
ENSELUG00000011050	upf3a	99	51.215	ENSANAG00000021713	UPF3A	99	52.227	Aotus_nancymaae
ENSELUG00000011050	upf3a	84	45.499	ENSANAG00000025598	-	62	65.217	Aotus_nancymaae
ENSELUG00000011050	upf3a	83	51.090	ENSANAG00000021894	-	77	70.303	Aotus_nancymaae
ENSELUG00000011050	upf3a	99	80.833	ENSACLG00000026274	upf3a	98	81.002	Astatotilapia_calliptera
ENSELUG00000011050	upf3a	100	80.645	ENSAMXG00000002608	upf3a	100	80.645	Astyanax_mexicanus
ENSELUG00000011050	upf3a	83	51.090	ENSCJAG00000004975	UPF3B	77	69.697	Callithrix_jacchus
ENSELUG00000011050	upf3a	97	53.053	ENSCJAG00000019102	UPF3A	99	52.525	Callithrix_jacchus
ENSELUG00000011050	upf3a	91	55.165	ENSCAFG00000006504	UPF3A	97	55.165	Canis_familiaris
ENSELUG00000011050	upf3a	91	55.165	ENSCAFG00020014268	UPF3A	94	55.165	Canis_lupus_dingo
ENSELUG00000011050	upf3a	83	46.535	ENSCAFG00020004074	UPF3B	63	71.233	Canis_lupus_dingo
ENSELUG00000011050	upf3a	84	55.721	ENSCHIG00000008682	UPF3A	85	53.075	Capra_hircus
ENSELUG00000011050	upf3a	76	55.556	ENSTSYG00000001918	UPF3A	99	55.556	Carlito_syrichta
ENSELUG00000011050	upf3a	83	51.816	ENSTSYG00000014690	UPF3B	76	65.294	Carlito_syrichta
ENSELUG00000011050	upf3a	81	55.216	ENSCPOG00000006824	UPF3A	91	55.216	Cavia_porcellus
ENSELUG00000011050	upf3a	82	40.712	ENSCCAG00000029813	-	52	59.494	Cebus_capucinus
ENSELUG00000011050	upf3a	99	52.525	ENSCCAG00000018406	UPF3A	99	53.535	Cebus_capucinus
ENSELUG00000011050	upf3a	99	54.772	ENSCATG00000029733	UPF3A	99	55.602	Cercocebus_atys
ENSELUG00000011050	upf3a	99	54.021	ENSCSAG00000017388	UPF3A	99	54.845	Chlorocebus_sabaeus
ENSELUG00000011050	upf3a	78	59.786	ENSCGRG00001017387	Upf3a	88	57.641	Cricetulus_griseus_chok1gshd
ENSELUG00000011050	upf3a	78	59.786	ENSCGRG00000001468	Upf3a	88	57.641	Cricetulus_griseus_crigri
ENSELUG00000011050	upf3a	99	82.112	ENSCSEG00000005106	upf3a	97	83.040	Cynoglossus_semilaevis
ENSELUG00000011050	upf3a	82	54.975	ENSCSEG00000002046	upf3b	88	51.395	Cynoglossus_semilaevis
ENSELUG00000011050	upf3a	99	78.834	ENSCVAG00000022333	upf3a	98	79.004	Cyprinodon_variegatus
ENSELUG00000011050	upf3a	87	44.811	ENSCVAG00000005030	upf3b	93	49.428	Cyprinodon_variegatus
ENSELUG00000011050	upf3a	100	82.151	ENSDARG00000069297	upf3a	100	82.151	Danio_rerio
ENSELUG00000011050	upf3a	83	59.709	ENSDNOG00000034391	UPF3A	93	59.709	Dasypus_novemcinctus
ENSELUG00000011050	upf3a	99	50.699	ENSETEG00000010110	UPF3A	99	50.699	Echinops_telfairi
ENSELUG00000011050	upf3a	83	49.015	ENSEASG00005012919	UPF3B	62	68.116	Equus_asinus_asinus
ENSELUG00000011050	upf3a	97	55.280	ENSEASG00005021884	UPF3A	97	55.280	Equus_asinus_asinus
ENSELUG00000011050	upf3a	95	56.250	ENSECAG00000017141	UPF3A	97	55.579	Equus_caballus
ENSELUG00000011050	upf3a	83	49.015	ENSECAG00000016947	UPF3B	62	61.429	Equus_caballus
ENSELUG00000011050	upf3a	90	57.692	ENSFCAG00000014602	UPF3A	95	57.143	Felis_catus
ENSELUG00000011050	upf3a	83	48.706	ENSFHEG00000017895	upf3b	89	50.472	Fundulus_heteroclitus
ENSELUG00000011050	upf3a	69	79.141	ENSGMOG00000019615	upf3a	100	79.141	Gadus_morhua
ENSELUG00000011050	upf3a	50	60.338	ENSGAFG00000000829	upf3b	89	50.237	Gambusia_affinis
ENSELUG00000011050	upf3a	100	78.936	ENSGAFG00000021170	upf3a	99	78.936	Gambusia_affinis
ENSELUG00000011050	upf3a	69	80.625	ENSGACG00000001972	upf3a	100	80.625	Gasterosteus_aculeatus
ENSELUG00000011050	upf3a	80	48.731	ENSGACG00000017435	upf3b	60	70.122	Gasterosteus_aculeatus
ENSELUG00000011050	upf3a	87	44.394	ENSGAGG00000001219	UPF3B	90	50.577	Gopherus_agassizii
ENSELUG00000011050	upf3a	91	56.376	ENSGGOG00000015428	UPF3A	95	56.376	Gorilla_gorilla
ENSELUG00000011050	upf3a	90	46.875	ENSGGOG00000043074	-	80	49.872	Gorilla_gorilla
ENSELUG00000011050	upf3a	81	49.471	ENSGGOG00000041219	-	85	50.513	Gorilla_gorilla
ENSELUG00000011050	upf3a	99	83.983	ENSHBUG00000011325	upf3a	98	84.165	Haplochromis_burtoni
ENSELUG00000011050	upf3a	76	56.667	ENSHGLG00000001544	UPF3A	86	57.222	Heterocephalus_glaber_female
ENSELUG00000011050	upf3a	76	56.667	ENSHGLG00100013244	UPF3A	86	57.222	Heterocephalus_glaber_male
ENSELUG00000011050	upf3a	98	72.271	ENSHCOG00000013985	upf3a	96	72.707	Hippocampus_comes
ENSELUG00000011050	upf3a	100	80.645	ENSIPUG00000023450	upf3a	100	80.645	Ictalurus_punctatus
ENSELUG00000011050	upf3a	99	82.289	ENSKMAG00000004381	upf3a	98	82.468	Kryptolebias_marmoratus
ENSELUG00000011050	upf3a	84	50.353	ENSKMAG00000020300	upf3b	88	51.090	Kryptolebias_marmoratus
ENSELUG00000011050	upf3a	100	78.710	ENSLBEG00000021570	upf3a	100	78.065	Labrus_bergylta
ENSELUG00000011050	upf3a	67	41.711	ENSLACG00000006645	UPF3A	74	87.500	Latimeria_chalumnae
ENSELUG00000011050	upf3a	51	69.136	ENSLOCG00000015238	upf3b	89	48.379	Lepisosteus_oculatus
ENSELUG00000011050	upf3a	99	77.707	ENSLOCG00000002665	upf3a	100	77.707	Lepisosteus_oculatus
ENSELUG00000011050	upf3a	99	53.958	ENSMFAG00000045016	UPF3A	99	54.262	Macaca_fascicularis
ENSELUG00000011050	upf3a	90	57.639	ENSMMUG00000007449	UPF3A	99	55.603	Macaca_mulatta
ENSELUG00000011050	upf3a	89	58.937	ENSMNEG00000036402	UPF3A	83	58.937	Macaca_nemestrina
ENSELUG00000011050	upf3a	89	58.454	ENSMLEG00000014726	UPF3A	93	58.454	Mandrillus_leucophaeus
ENSELUG00000011050	upf3a	99	79.498	ENSMAMG00000018364	upf3a	98	79.665	Mastacembelus_armatus
ENSELUG00000011050	upf3a	99	80.833	ENSMZEG00005021571	upf3a	98	81.002	Maylandia_zebra
ENSELUG00000011050	upf3a	85	64.878	ENSMGAG00000014837	UPF3A	99	64.878	Meleagris_gallopavo
ENSELUG00000011050	upf3a	59	69.395	ENSMOCG00000000550	Upf3a	58	68.932	Microtus_ochrogaster
ENSELUG00000011050	upf3a	99	78.452	ENSMMOG00000019751	upf3a	98	78.452	Mola_mola
ENSELUG00000011050	upf3a	90	64.186	ENSMODG00000003159	UPF3A	99	65.116	Monodelphis_domestica
ENSELUG00000011050	upf3a	50	56.356	ENSMALG00000008042	upf3b	90	50.000	Monopterus_albus
ENSELUG00000011050	upf3a	74	60.399	MGP_CAROLIEiJ_G0030848	Upf3a	83	57.542	Mus_caroli
ENSELUG00000011050	upf3a	74	59.887	ENSMUSG00000038398	Upf3a	84	59.887	Mus_musculus
ENSELUG00000011050	upf3a	72	62.798	MGP_PahariEiJ_G0021311	Upf3a	79	62.798	Mus_pahari
ENSELUG00000011050	upf3a	74	59.887	MGP_SPRETEiJ_G0031958	Upf3a	84	59.887	Mus_spretus
ENSELUG00000011050	upf3a	96	54.927	ENSMPUG00000009139	UPF3A	98	54.470	Mustela_putorius_furo
ENSELUG00000011050	upf3a	89	57.737	ENSMLUG00000015905	UPF3A	99	57.737	Myotis_lucifugus
ENSELUG00000011050	upf3a	77	60.163	ENSNGAG00000019314	Upf3a	87	60.163	Nannospalax_galili
ENSELUG00000011050	upf3a	99	83.766	ENSNBRG00000000828	upf3a	98	83.948	Neolamprologus_brichardi
ENSELUG00000011050	upf3a	93	55.727	ENSNLEG00000007563	UPF3A	96	55.727	Nomascus_leucogenys
ENSELUG00000011050	upf3a	99	82.796	ENSONIG00000006817	upf3a	98	82.974	Oreochromis_niloticus
ENSELUG00000011050	upf3a	77	56.452	ENSOANG00000006985	-	95	56.452	Ornithorhynchus_anatinus
ENSELUG00000011050	upf3a	89	50.000	ENSOCUG00000008450	UPF3A	84	49.176	Oryctolagus_cuniculus
ENSELUG00000011050	upf3a	98	77.996	ENSORLG00000010911	upf3a	97	77.996	Oryzias_latipes
ENSELUG00000011050	upf3a	83	42.381	ENSORLG00000001026	upf3b	89	46.770	Oryzias_latipes
ENSELUG00000011050	upf3a	98	77.313	ENSORLG00020014317	upf3a	99	76.068	Oryzias_latipes_hni
ENSELUG00000011050	upf3a	83	42.381	ENSORLG00020003758	upf3b	58	60.894	Oryzias_latipes_hni
ENSELUG00000011050	upf3a	100	76.972	ENSORLG00015017339	upf3a	58	76.972	Oryzias_latipes_hsok
ENSELUG00000011050	upf3a	98	80.659	ENSOMEG00000014425	upf3a	99	79.318	Oryzias_melastigma
ENSELUG00000011050	upf3a	71	62.353	ENSOGAG00000004788	UPF3A	82	62.537	Otolemur_garnettii
ENSELUG00000011050	upf3a	90	54.734	ENSOARG00000009004	UPF3A	88	54.965	Ovis_aries
ENSELUG00000011050	upf3a	89	56.751	ENSPPAG00000042267	UPF3A	91	56.164	Pan_paniscus
ENSELUG00000011050	upf3a	90	57.692	ENSPPRG00000025062	UPF3A	95	56.926	Panthera_pardus
ENSELUG00000011050	upf3a	91	55.022	ENSPTRG00000006073	UPF3A	95	55.459	Pan_troglodytes
ENSELUG00000011050	upf3a	81	45.244	ENSPTRG00000051640	-	85	47.558	Pan_troglodytes
ENSELUG00000011050	upf3a	81	49.471	ENSPTRG00000041187	-	86	48.942	Pan_troglodytes
ENSELUG00000011050	upf3a	99	55.602	ENSPANG00000004346	UPF3A	99	56.017	Papio_anubis
ENSELUG00000011050	upf3a	100	72.032	ENSPKIG00000004422	upf3a	100	72.032	Paramormyrops_kingsleyae
ENSELUG00000011050	upf3a	92	50.433	ENSPKIG00000019226	upf3b	88	66.667	Paramormyrops_kingsleyae
ENSELUG00000011050	upf3a	86	66.262	ENSPSIG00000007468	UPF3A	98	66.262	Pelodiscus_sinensis
ENSELUG00000011050	upf3a	100	76.434	ENSPMGG00000012696	upf3a	99	76.434	Periophthalmus_magnuspinnatus
ENSELUG00000011050	upf3a	75	61.453	ENSPEMG00000019968	-	84	61.453	Peromyscus_maniculatus_bairdii
ENSELUG00000011050	upf3a	83	47.317	ENSPCIG00000028914	UPF3B	84	47.317	Phascolarctos_cinereus
ENSELUG00000011050	upf3a	83	69.099	ENSPCIG00000019590	-	87	73.786	Phascolarctos_cinereus
ENSELUG00000011050	upf3a	99	80.087	ENSPFOG00000013222	upf3a	98	80.260	Poecilia_formosa
ENSELUG00000011050	upf3a	83	45.297	ENSPLAG00000019922	upf3b	89	50.948	Poecilia_latipinna
ENSELUG00000011050	upf3a	83	45.297	ENSPLAG00000005105	upf3b	89	50.948	Poecilia_latipinna
ENSELUG00000011050	upf3a	99	79.050	ENSPLAG00000011960	upf3a	99	79.221	Poecilia_latipinna
ENSELUG00000011050	upf3a	83	45.297	ENSPMEG00000023532	upf3b	89	50.948	Poecilia_mexicana
ENSELUG00000011050	upf3a	99	76.763	ENSPMEG00000000836	upf3a	98	76.923	Poecilia_mexicana
ENSELUG00000011050	upf3a	93	54.644	ENSPPYG00000005536	UPF3A	96	55.172	Pongo_abelii
ENSELUG00000011050	upf3a	60	59.353	ENSPCAG00000013124	UPF3A	56	61.049	Procavia_capensis
ENSELUG00000011050	upf3a	83	51.208	ENSPCOG00000021960	UPF3B	51	70.732	Propithecus_coquereli
ENSELUG00000011050	upf3a	90	54.386	ENSPVAG00000005656	UPF3A	93	54.605	Pteropus_vampyrus
ENSELUG00000011050	upf3a	83	41.844	ENSPNYG00000009846	upf3b	88	51.319	Pundamilia_nyererei
ENSELUG00000011050	upf3a	99	80.833	ENSPNYG00000011289	upf3a	98	81.002	Pundamilia_nyererei
ENSELUG00000011050	upf3a	100	83.011	ENSPNAG00000019532	upf3a	100	83.011	Pygocentrus_nattereri
ENSELUG00000011050	upf3a	84	51.294	ENSPNAG00000021528	upf3b	55	73.171	Pygocentrus_nattereri
ENSELUG00000011050	upf3a	71	62.048	ENSRNOG00000017397	Upf3a	80	62.500	Rattus_norvegicus
ENSELUG00000011050	upf3a	92	57.412	ENSRBIG00000034007	UPF3A	92	57.277	Rhinopithecus_bieti
ENSELUG00000011050	upf3a	89	58.838	ENSRROG00000012212	UPF3A	84	59.179	Rhinopithecus_roxellana
ENSELUG00000011050	upf3a	81	54.476	ENSSBOG00000029989	UPF3A	83	54.476	Saimiri_boliviensis_boliviensis
ENSELUG00000011050	upf3a	83	51.807	ENSSBOG00000019740	UPF3B	78	71.166	Saimiri_boliviensis_boliviensis
ENSELUG00000011050	upf3a	83	67.424	ENSSHAG00000009895	UPF3A	93	68.434	Sarcophilus_harrisii
ENSELUG00000011050	upf3a	100	71.767	ENSSFOG00015021851	upf3a	100	70.474	Scleropages_formosus
ENSELUG00000011050	upf3a	99	75.102	ENSSMAG00000003858	upf3a	95	80.921	Scophthalmus_maximus
ENSELUG00000011050	upf3a	83	52.404	ENSSMAG00000012913	upf3b	54	71.951	Scophthalmus_maximus
ENSELUG00000011050	upf3a	99	80.544	ENSSDUG00000009680	upf3a	91	91.216	Seriola_dumerili
ENSELUG00000011050	upf3a	50	65.272	ENSSDUG00000005682	upf3b	88	51.691	Seriola_dumerili
ENSELUG00000011050	upf3a	50	65.272	ENSSLDG00000003130	upf3b	88	51.816	Seriola_lalandi_dorsalis
ENSELUG00000011050	upf3a	99	83.333	ENSSLDG00000009700	upf3a	98	83.514	Seriola_lalandi_dorsalis
ENSELUG00000011050	upf3a	82	49.364	ENSSARG00000007262	UPF3A	92	47.792	Sorex_araneus
ENSELUG00000011050	upf3a	99	82.251	ENSSPAG00000007938	upf3a	98	82.251	Stegastes_partitus
ENSELUG00000011050	upf3a	51	68.033	ENSSPAG00000009989	upf3b	88	51.551	Stegastes_partitus
ENSELUG00000011050	upf3a	82	57.107	ENSSSCG00000024679	UPF3A	78	56.818	Sus_scrofa
ENSELUG00000011050	upf3a	83	69.000	ENSTGUG00000009493	UPF3A	99	69.173	Taeniopygia_guttata
ENSELUG00000011050	upf3a	99	77.922	ENSTRUG00000012730	upf3a	99	77.922	Takifugu_rubripes
ENSELUG00000011050	upf3a	84	71.679	ENSTNIG00000014973	upf3a	99	71.178	Tetraodon_nigroviridis
ENSELUG00000011050	upf3a	78	53.867	ENSTTRG00000015414	UPF3A	77	53.867	Tursiops_truncatus
ENSELUG00000011050	upf3a	83	46.192	ENSUAMG00000024565	UPF3B	66	66.667	Ursus_americanus
ENSELUG00000011050	upf3a	82	58.081	ENSVPAG00000003525	UPF3A	95	58.081	Vicugna_pacos
ENSELUG00000011050	upf3a	91	53.846	ENSVVUG00000013538	UPF3A	91	54.725	Vulpes_vulpes
ENSELUG00000011050	upf3a	83	46.535	ENSVVUG00000011594	UPF3B	77	70.303	Vulpes_vulpes
ENSELUG00000011050	upf3a	91	55.349	ENSXETG00000002572	upf3a	100	55.349	Xenopus_tropicalis
ENSELUG00000011050	upf3a	83	46.059	ENSXETG00000007440	upf3b	73	69.231	Xenopus_tropicalis
ENSELUG00000011050	upf3a	99	79.698	ENSXMAG00000013452	upf3a	98	79.870	Xiphophorus_maculatus
ENSELUG00000011050	upf3a	83	45.161	ENSXMAG00000013680	upf3b	89	50.237	Xiphophorus_maculatus