EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000011481 (Gene tree)
Gene ID: 105031073
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 8501 bases
Position: chrLG11:3817461-3825961
Accession: 105031073
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000011073	zf-CCCH	PF00642.24	3.6e-20	1	1
ENSELUP00000011073	zf-CCHC	PF00098.23	5.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000001081	-	5552	XM_010905283	ENSELUP00000011073	272 (aa)	XP_010903585	UPI0005770D14

Gene Model

Click here to download ENSELUG00000011481's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000011481's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000011481	cpsf4	100	82.847	ENSG00000160917	CPSF4	100	97.321	Homo_sapiens
ENSELUG00000011481	cpsf4	68	76.087	ENSAPOG00000004921	cpsf4	100	76.087	Acanthochromis_polyacanthus
ENSELUG00000011481	cpsf4	100	80.657	ENSAMEG00000006252	CPSF4	100	82.847	Ailuropoda_melanoleuca
ENSELUG00000011481	cpsf4	100	79.044	ENSACIG00000009248	cpsf4	100	79.044	Amphilophus_citrinellus
ENSELUG00000011481	cpsf4	100	85.662	ENSAOCG00000019616	cpsf4	100	85.662	Amphiprion_ocellaris
ENSELUG00000011481	cpsf4	100	85.662	ENSAPEG00000011679	cpsf4	100	85.662	Amphiprion_percula
ENSELUG00000011481	cpsf4	100	86.765	ENSATEG00000007010	cpsf4	100	86.397	Anabas_testudineus
ENSELUG00000011481	cpsf4	100	80.292	ENSACAG00000012941	CPSF4	89	82.117	Anolis_carolinensis
ENSELUG00000011481	cpsf4	100	82.847	ENSANAG00000021360	CPSF4	100	82.847	Aotus_nancymaae
ENSELUG00000011481	cpsf4	100	86.397	ENSACLG00000010374	cpsf4	100	86.397	Astatotilapia_calliptera
ENSELUG00000011481	cpsf4	100	86.813	ENSAMXG00000031647	cpsf4	100	86.813	Astyanax_mexicanus
ENSELUG00000011481	cpsf4	100	78.676	ENSBTAG00000002090	CPSF4	100	78.676	Bos_taurus
ENSELUG00000011481	cpsf4	100	82.847	ENSCJAG00000015826	CPSF4	100	82.847	Callithrix_jacchus
ENSELUG00000011481	cpsf4	100	80.657	ENSCAFG00000015036	CPSF4	99	86.826	Canis_familiaris
ENSELUG00000011481	cpsf4	100	77.737	ENSCAFG00020014462	CPSF4	100	77.737	Canis_lupus_dingo
ENSELUG00000011481	cpsf4	100	81.022	ENSCHIG00000014313	CPSF4	100	83.212	Capra_hircus
ENSELUG00000011481	cpsf4	100	72.161	ENSTSYG00000014604	-	100	72.161	Carlito_syrichta
ENSELUG00000011481	cpsf4	89	72.951	ENSTSYG00000008195	-	99	73.123	Carlito_syrichta
ENSELUG00000011481	cpsf4	100	79.779	ENSTSYG00000005712	-	100	79.779	Carlito_syrichta
ENSELUG00000011481	cpsf4	83	80.176	ENSCAPG00000013881	CPSF4	88	80.176	Cavia_aperea
ENSELUG00000011481	cpsf4	100	79.412	ENSCPOG00000001783	CPSF4	100	79.412	Cavia_porcellus
ENSELUG00000011481	cpsf4	100	82.847	ENSCCAG00000028291	CPSF4	100	82.847	Cebus_capucinus
ENSELUG00000011481	cpsf4	100	82.847	ENSCATG00000038440	CPSF4	100	82.847	Cercocebus_atys
ENSELUG00000011481	cpsf4	100	80.657	ENSCLAG00000007050	CPSF4	100	82.847	Chinchilla_lanigera
ENSELUG00000011481	cpsf4	100	82.847	ENSCSAG00000017795	CPSF4	100	82.847	Chlorocebus_sabaeus
ENSELUG00000011481	cpsf4	81	79.638	ENSCPBG00000020869	CPSF4	100	81.448	Chrysemys_picta_bellii
ENSELUG00000011481	cpsf4	61	79.518	ENSCPBG00000010269	-	100	79.518	Chrysemys_picta_bellii
ENSELUG00000011481	cpsf4	97	54.924	ENSCING00000021080	-	97	55.303	Ciona_intestinalis
ENSELUG00000011481	cpsf4	96	53.004	ENSCSAVG00000011469	-	97	52.650	Ciona_savignyi
ENSELUG00000011481	cpsf4	100	82.847	ENSCANG00000019384	CPSF4	100	82.847	Colobus_angolensis_palliatus
ENSELUG00000011481	cpsf4	100	79.412	ENSCGRG00001024184	Cpsf4	100	79.412	Cricetulus_griseus_chok1gshd
ENSELUG00000011481	cpsf4	100	80.657	ENSCGRG00000013892	Cpsf4	100	82.847	Cricetulus_griseus_crigri
ENSELUG00000011481	cpsf4	100	86.765	ENSCSEG00000019055	cpsf4	100	86.765	Cynoglossus_semilaevis
ENSELUG00000011481	cpsf4	100	83.456	ENSCVAG00000016528	cpsf4	100	83.456	Cyprinodon_variegatus
ENSELUG00000011481	cpsf4	100	86.496	ENSDARG00000020217	cpsf4	100	86.496	Danio_rerio
ENSELUG00000011481	cpsf4	100	80.657	ENSDNOG00000006344	CPSF4	100	82.847	Dasypus_novemcinctus
ENSELUG00000011481	cpsf4	81	78.829	ENSDORG00000000742	Cpsf4	100	81.532	Dipodomys_ordii
ENSELUG00000011481	cpsf4	100	54.795	FBgn0015621	Clp	99	53.846	Drosophila_melanogaster
ENSELUG00000011481	cpsf4	69	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSELUG00000011481	cpsf4	99	64.103	ENSEBUG00000012552	cpsf4	98	64.103	Eptatretus_burgeri
ENSELUG00000011481	cpsf4	100	79.412	ENSEASG00005002487	CPSF4	100	79.412	Equus_asinus_asinus
ENSELUG00000011481	cpsf4	100	80.657	ENSECAG00000007525	CPSF4	100	82.847	Equus_caballus
ENSELUG00000011481	cpsf4	64	95.522	ENSEEUG00000002158	CPSF4	73	95.522	Erinaceus_europaeus
ENSELUG00000011481	cpsf4	100	80.657	ENSFCAG00000015070	CPSF4	100	82.847	Felis_catus
ENSELUG00000011481	cpsf4	61	56.395	ENSFALG00000012906	-	100	56.395	Ficedula_albicollis
ENSELUG00000011481	cpsf4	100	78.676	ENSFALG00000013799	CPSF4	100	78.676	Ficedula_albicollis
ENSELUG00000011481	cpsf4	90	79.032	ENSFDAG00000014092	CPSF4	100	81.452	Fukomys_damarensis
ENSELUG00000011481	cpsf4	100	82.353	ENSFHEG00000010880	cpsf4	100	82.353	Fundulus_heteroclitus
ENSELUG00000011481	cpsf4	100	82.545	ENSGMOG00000002330	cpsf4	100	82.545	Gadus_morhua
ENSELUG00000011481	cpsf4	99	37.113	ENSGALG00000004441	-	92	37.113	Gallus_gallus
ENSELUG00000011481	cpsf4	100	79.412	ENSGALG00000004714	CPSF4	100	79.412	Gallus_gallus
ENSELUG00000011481	cpsf4	100	82.721	ENSGAFG00000010580	cpsf4	100	82.721	Gambusia_affinis
ENSELUG00000011481	cpsf4	100	79.927	ENSGACG00000007792	cpsf4	100	79.562	Gasterosteus_aculeatus
ENSELUG00000011481	cpsf4	61	80.000	ENSGAGG00000020579	-	92	80.000	Gopherus_agassizii
ENSELUG00000011481	cpsf4	100	82.117	ENSGAGG00000021835	CPSF4	100	83.577	Gopherus_agassizii
ENSELUG00000011481	cpsf4	100	82.847	ENSGGOG00000015131	CPSF4	100	82.847	Gorilla_gorilla
ENSELUG00000011481	cpsf4	100	86.397	ENSHBUG00000013699	cpsf4	100	86.397	Haplochromis_burtoni
ENSELUG00000011481	cpsf4	100	80.000	ENSHGLG00000017150	CPSF4	100	82.182	Heterocephalus_glaber_female
ENSELUG00000011481	cpsf4	87	76.667	ENSHGLG00100009215	-	100	79.167	Heterocephalus_glaber_male
ENSELUG00000011481	cpsf4	65	64.972	ENSHGLG00100017302	-	86	66.129	Heterocephalus_glaber_male
ENSELUG00000011481	cpsf4	100	84.191	ENSHCOG00000004397	cpsf4	100	84.191	Hippocampus_comes
ENSELUG00000011481	cpsf4	100	83.577	ENSIPUG00000017147	cpsf4	100	85.036	Ictalurus_punctatus
ENSELUG00000011481	cpsf4	100	80.657	ENSSTOG00000001688	CPSF4	100	82.847	Ictidomys_tridecemlineatus
ENSELUG00000011481	cpsf4	100	80.657	ENSJJAG00000019426	Cpsf4	100	82.847	Jaculus_jaculus
ENSELUG00000011481	cpsf4	100	84.191	ENSKMAG00000015642	cpsf4	100	83.824	Kryptolebias_marmoratus
ENSELUG00000011481	cpsf4	100	59.489	ENSLACG00000018470	-	100	59.707	Latimeria_chalumnae
ENSELUG00000011481	cpsf4	100	82.482	ENSLACG00000010938	CPSF4	100	82.482	Latimeria_chalumnae
ENSELUG00000011481	cpsf4	100	83.883	ENSLOCG00000004814	cpsf4	100	83.883	Lepisosteus_oculatus
ENSELUG00000011481	cpsf4	100	81.022	ENSLAFG00000000159	CPSF4	100	83.212	Loxodonta_africana
ENSELUG00000011481	cpsf4	100	82.847	ENSMFAG00000001462	CPSF4	100	82.847	Macaca_fascicularis
ENSELUG00000011481	cpsf4	100	82.847	ENSMMUG00000019191	CPSF4	100	82.847	Macaca_mulatta
ENSELUG00000011481	cpsf4	100	82.847	ENSMNEG00000032306	CPSF4	100	82.847	Macaca_nemestrina
ENSELUG00000011481	cpsf4	100	82.847	ENSMLEG00000034721	CPSF4	100	82.847	Mandrillus_leucophaeus
ENSELUG00000011481	cpsf4	100	85.294	ENSMAMG00000006244	cpsf4	100	84.926	Mastacembelus_armatus
ENSELUG00000011481	cpsf4	100	86.397	ENSMZEG00005007515	cpsf4	100	86.397	Maylandia_zebra
ENSELUG00000011481	cpsf4	88	77.311	ENSMGAG00000004235	CPSF4	100	77.311	Meleagris_gallopavo
ENSELUG00000011481	cpsf4	100	80.657	ENSMAUG00000021253	Cpsf4	100	82.847	Mesocricetus_auratus
ENSELUG00000011481	cpsf4	100	82.847	ENSMICG00000017429	CPSF4	100	82.847	Microcebus_murinus
ENSELUG00000011481	cpsf4	100	80.657	ENSMOCG00000014901	Cpsf4	100	82.847	Microtus_ochrogaster
ENSELUG00000011481	cpsf4	100	84.926	ENSMMOG00000001813	cpsf4	100	84.926	Mola_mola
ENSELUG00000011481	cpsf4	100	83.212	ENSMODG00000001367	CPSF4	100	83.212	Monodelphis_domestica
ENSELUG00000011481	cpsf4	100	84.559	ENSMALG00000012611	cpsf4	100	84.191	Monopterus_albus
ENSELUG00000011481	cpsf4	100	80.657	MGP_CAROLIEiJ_G0028012	Cpsf4	100	82.847	Mus_caroli
ENSELUG00000011481	cpsf4	100	80.657	ENSMUSG00000029625	Cpsf4	100	82.847	Mus_musculus
ENSELUG00000011481	cpsf4	100	80.657	MGP_PahariEiJ_G0024581	Cpsf4	100	82.847	Mus_pahari
ENSELUG00000011481	cpsf4	100	82.847	MGP_SPRETEiJ_G0029013	Cpsf4	100	82.847	Mus_spretus
ENSELUG00000011481	cpsf4	100	80.657	ENSMPUG00000016508	CPSF4	100	82.847	Mustela_putorius_furo
ENSELUG00000011481	cpsf4	88	76.050	ENSMLUG00000010980	CPSF4	100	76.050	Myotis_lucifugus
ENSELUG00000011481	cpsf4	100	80.657	ENSNGAG00000001567	Cpsf4	100	82.847	Nannospalax_galili
ENSELUG00000011481	cpsf4	91	85.484	ENSNBRG00000003943	cpsf4	98	85.484	Neolamprologus_brichardi
ENSELUG00000011481	cpsf4	100	81.022	ENSNLEG00000011074	CPSF4	100	80.515	Nomascus_leucogenys
ENSELUG00000011481	cpsf4	100	83.212	ENSMEUG00000006955	CPSF4	100	83.212	Notamacropus_eugenii
ENSELUG00000011481	cpsf4	100	80.292	ENSOPRG00000013663	CPSF4	100	82.482	Ochotona_princeps
ENSELUG00000011481	cpsf4	99	67.537	ENSODEG00000018283	-	91	68.284	Octodon_degus
ENSELUG00000011481	cpsf4	100	64.029	ENSODEG00000009779	-	100	64.029	Octodon_degus
ENSELUG00000011481	cpsf4	100	80.657	ENSODEG00000011181	-	100	82.847	Octodon_degus
ENSELUG00000011481	cpsf4	100	86.397	ENSONIG00000008495	cpsf4	100	86.397	Oreochromis_niloticus
ENSELUG00000011481	cpsf4	100	53.521	ENSOANG00000009568	-	100	53.521	Ornithorhynchus_anatinus
ENSELUG00000011481	cpsf4	88	80.417	ENSOANG00000007729	CPSF4	100	80.417	Ornithorhynchus_anatinus
ENSELUG00000011481	cpsf4	100	80.292	ENSOCUG00000002437	CPSF4	70	82.482	Oryctolagus_cuniculus
ENSELUG00000011481	cpsf4	100	84.559	ENSORLG00000022798	cpsf4	100	84.191	Oryzias_latipes
ENSELUG00000011481	cpsf4	100	84.559	ENSORLG00020008548	cpsf4	100	84.191	Oryzias_latipes_hni
ENSELUG00000011481	cpsf4	100	84.191	ENSORLG00015019575	cpsf4	100	83.824	Oryzias_latipes_hsok
ENSELUG00000011481	cpsf4	100	84.191	ENSOMEG00000005176	cpsf4	100	83.824	Oryzias_melastigma
ENSELUG00000011481	cpsf4	100	82.847	ENSOGAG00000010884	CPSF4	100	82.847	Otolemur_garnettii
ENSELUG00000011481	cpsf4	100	73.381	ENSOARG00000018668	CPSF4	100	73.381	Ovis_aries
ENSELUG00000011481	cpsf4	100	82.847	ENSPPAG00000043355	CPSF4	100	82.847	Pan_paniscus
ENSELUG00000011481	cpsf4	100	80.657	ENSPPRG00000003134	CPSF4	100	82.847	Panthera_pardus
ENSELUG00000011481	cpsf4	90	82.186	ENSPTIG00000005604	CPSF4	90	82.186	Panthera_tigris_altaica
ENSELUG00000011481	cpsf4	100	82.847	ENSPTRG00000019453	CPSF4	100	82.847	Pan_troglodytes
ENSELUG00000011481	cpsf4	100	82.847	ENSPANG00000023123	CPSF4	100	82.847	Papio_anubis
ENSELUG00000011481	cpsf4	100	85.036	ENSPKIG00000014278	cpsf4	100	85.036	Paramormyrops_kingsleyae
ENSELUG00000011481	cpsf4	81	79.186	ENSPSIG00000011229	CPSF4	100	80.995	Pelodiscus_sinensis
ENSELUG00000011481	cpsf4	81	57.919	ENSPSIG00000018198	-	100	58.559	Pelodiscus_sinensis
ENSELUG00000011481	cpsf4	100	73.897	ENSPMGG00000017735	cpsf4	100	73.897	Periophthalmus_magnuspinnatus
ENSELUG00000011481	cpsf4	100	80.657	ENSPEMG00000004508	Cpsf4	100	82.847	Peromyscus_maniculatus_bairdii
ENSELUG00000011481	cpsf4	100	83.212	ENSPCIG00000024776	CPSF4	100	83.212	Phascolarctos_cinereus
ENSELUG00000011481	cpsf4	100	82.721	ENSPFOG00000014912	cpsf4	100	82.721	Poecilia_formosa
ENSELUG00000011481	cpsf4	100	76.471	ENSPLAG00000009599	cpsf4	100	76.471	Poecilia_latipinna
ENSELUG00000011481	cpsf4	100	82.721	ENSPMEG00000009790	cpsf4	100	82.721	Poecilia_mexicana
ENSELUG00000011481	cpsf4	100	82.353	ENSPREG00000018166	cpsf4	100	82.353	Poecilia_reticulata
ENSELUG00000011481	cpsf4	87	81.172	ENSPPYG00000017378	CPSF4	100	81.172	Pongo_abelii
ENSELUG00000011481	cpsf4	100	80.657	ENSPCAG00000001892	CPSF4	100	82.847	Procavia_capensis
ENSELUG00000011481	cpsf4	100	80.657	ENSPCOG00000012771	CPSF4	100	82.847	Propithecus_coquereli
ENSELUG00000011481	cpsf4	100	75.182	ENSPVAG00000007531	CPSF4	100	77.372	Pteropus_vampyrus
ENSELUG00000011481	cpsf4	100	86.397	ENSPNYG00000018559	cpsf4	100	86.397	Pundamilia_nyererei
ENSELUG00000011481	cpsf4	100	87.179	ENSPNAG00000003736	cpsf4	100	87.179	Pygocentrus_nattereri
ENSELUG00000011481	cpsf4	100	78.309	ENSRNOG00000000985	Cpsf4	100	78.309	Rattus_norvegicus
ENSELUG00000011481	cpsf4	87	81.590	ENSRBIG00000033886	CPSF4	100	81.590	Rhinopithecus_bieti
ENSELUG00000011481	cpsf4	100	79.412	ENSRROG00000040431	CPSF4	100	79.412	Rhinopithecus_roxellana
ENSELUG00000011481	cpsf4	100	82.847	ENSSBOG00000020493	CPSF4	100	82.847	Saimiri_boliviensis_boliviensis
ENSELUG00000011481	cpsf4	100	83.212	ENSSHAG00000011533	CPSF4	100	83.212	Sarcophilus_harrisii
ENSELUG00000011481	cpsf4	100	83.871	ENSSFOG00015007883	cpsf4	100	84.477	Scleropages_formosus
ENSELUG00000011481	cpsf4	100	79.412	ENSSMAG00000006374	cpsf4	100	79.412	Scophthalmus_maximus
ENSELUG00000011481	cpsf4	100	87.132	ENSSDUG00000018887	cpsf4	100	86.765	Seriola_dumerili
ENSELUG00000011481	cpsf4	100	87.132	ENSSLDG00000019078	cpsf4	100	86.765	Seriola_lalandi_dorsalis
ENSELUG00000011481	cpsf4	87	81.590	ENSSARG00000012416	CPSF4	100	81.590	Sorex_araneus
ENSELUG00000011481	cpsf4	100	83.577	ENSSPUG00000003549	CPSF4	100	83.577	Sphenodon_punctatus
ENSELUG00000011481	cpsf4	96	57.088	ENSSPUG00000014803	-	97	57.854	Sphenodon_punctatus
ENSELUG00000011481	cpsf4	100	80.882	ENSSPAG00000006174	cpsf4	100	80.882	Stegastes_partitus
ENSELUG00000011481	cpsf4	100	79.412	ENSSSCG00000026896	CPSF4	100	79.412	Sus_scrofa
ENSELUG00000011481	cpsf4	100	77.737	ENSTGUG00000007552	CPSF4	100	77.737	Taeniopygia_guttata
ENSELUG00000011481	cpsf4	100	82.721	ENSTRUG00000024220	cpsf4	100	82.721	Takifugu_rubripes
ENSELUG00000011481	cpsf4	100	83.088	ENSTNIG00000006265	cpsf4	100	83.456	Tetraodon_nigroviridis
ENSELUG00000011481	cpsf4	87	72.803	ENSTBEG00000011406	CPSF4	100	72.803	Tupaia_belangeri
ENSELUG00000011481	cpsf4	73	95.455	ENSTTRG00000003007	CPSF4	100	72.426	Tursiops_truncatus
ENSELUG00000011481	cpsf4	92	76.800	ENSUAMG00000008051	CPSF4	85	76.800	Ursus_americanus
ENSELUG00000011481	cpsf4	100	78.309	ENSUMAG00000009474	CPSF4	100	78.309	Ursus_maritimus
ENSELUG00000011481	cpsf4	100	79.412	ENSVVUG00000008824	CPSF4	100	79.412	Vulpes_vulpes
ENSELUG00000011481	cpsf4	100	78.799	ENSXETG00000009892	cpsf4	100	79.577	Xenopus_tropicalis
ENSELUG00000011481	cpsf4	99	60.517	ENSXETG00000004641	cpsf4l	99	60.219	Xenopus_tropicalis
ENSELUG00000011481	cpsf4	100	82.353	ENSXCOG00000016040	cpsf4	100	82.353	Xiphophorus_couchianus
ENSELUG00000011481	cpsf4	100	82.721	ENSXMAG00000024670	cpsf4	100	82.721	Xiphophorus_maculatus