EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000011540 (Gene tree)
Gene ID: 105005612
Gene Symbol: cnot4b
Alias: zgc:63566
Full Name: CCR4-NOT transcription complex subunit 4
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 39519 bases
Position: chrLG14:31714717-31754235
Accession: 105005612
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000011049	RRM_1	PF00076.22	2.6e-05	1	1
ENSELUP00000011081	RRM_1	PF00076.22	3.4e-05	1	1
ENSELUP00000011098	RRM_1	PF00076.22	4.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000001049	-	5807	XM_013137302	ENSELUP00000011098	896 (aa)	XP_012992756	UPI00057734C5
ENSELUT00000001120	-	2019	-	ENSELUP00000011049	672 (aa)	-	-
ENSELUT00000001068	-	5510	XM_013137303	ENSELUP00000011081	797 (aa)	XP_012992757	UPI000661A5E4

Gene Model

Click here to download ENSELUG00000011540's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000011540's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000011540	cnot4b	99	88.043	ENSELUG00000008742	cnot4a	96	88.971

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000011540	cnot4b	97	72.113	ENSG00000080802	CNOT4	100	73.887	Homo_sapiens
ENSELUG00000011540	cnot4b	94	62.162	ENSAPOG00000016272	cnot4a	92	92.075	Acanthochromis_polyacanthus
ENSELUG00000011540	cnot4b	92	81.739	ENSAMEG00000012081	CNOT4	89	81.739	Ailuropoda_melanoleuca
ENSELUG00000011540	cnot4b	100	62.885	ENSACIG00000003011	cnot4a	87	92.075	Amphilophus_citrinellus
ENSELUG00000011540	cnot4b	100	68.915	ENSAOCG00000010792	cnot4a	95	92.075	Amphiprion_ocellaris
ENSELUG00000011540	cnot4b	100	68.915	ENSAPEG00000004680	cnot4a	95	92.075	Amphiprion_percula
ENSELUG00000011540	cnot4b	100	67.149	ENSATEG00000017580	cnot4a	95	91.698	Anabas_testudineus
ENSELUG00000011540	cnot4b	100	59.121	ENSAPLG00000016441	CNOT4	100	58.324	Anas_platyrhynchos
ENSELUG00000011540	cnot4b	100	60.242	ENSACAG00000011154	CNOT4	100	59.316	Anolis_carolinensis
ENSELUG00000011540	cnot4b	97	72.113	ENSANAG00000032156	CNOT4	98	79.153	Aotus_nancymaae
ENSELUG00000011540	cnot4b	96	89.455	ENSACLG00000002514	cnot4a	95	92.075	Astatotilapia_calliptera
ENSELUG00000011540	cnot4b	83	92.453	ENSAMXG00000001373	cnot4a	94	92.453	Astyanax_mexicanus
ENSELUG00000011540	cnot4b	96	87.279	ENSAMXG00000011473	cnot4b	95	91.667	Astyanax_mexicanus
ENSELUG00000011540	cnot4b	97	71.229	ENSBTAG00000017919	CNOT4	100	73.021	Bos_taurus
ENSELUG00000011540	cnot4b	97	72.113	ENSCJAG00000012532	CNOT4	96	79.153	Callithrix_jacchus
ENSELUG00000011540	cnot4b	97	72.113	ENSCAFG00000003223	CNOT4	100	73.669	Canis_familiaris
ENSELUG00000011540	cnot4b	97	72.113	ENSCAFG00020000093	CNOT4	100	73.669	Canis_lupus_dingo
ENSELUG00000011540	cnot4b	97	72.113	ENSCHIG00000010955	CNOT4	100	73.669	Capra_hircus
ENSELUG00000011540	cnot4b	97	72.113	ENSTSYG00000000893	CNOT4	99	75.632	Carlito_syrichta
ENSELUG00000011540	cnot4b	96	73.373	ENSCAPG00000006213	CNOT4	100	73.591	Cavia_aperea
ENSELUG00000011540	cnot4b	97	72.113	ENSCPOG00000011526	CNOT4	100	73.887	Cavia_porcellus
ENSELUG00000011540	cnot4b	97	71.508	ENSCCAG00000024414	CNOT4	94	91.739	Cebus_capucinus
ENSELUG00000011540	cnot4b	97	71.508	ENSCATG00000022607	CNOT4	96	79.153	Cercocebus_atys
ENSELUG00000011540	cnot4b	97	72.113	ENSCLAG00000001857	CNOT4	100	73.887	Chinchilla_lanigera
ENSELUG00000011540	cnot4b	97	72.113	ENSCSAG00000009096	CNOT4	100	73.887	Chlorocebus_sabaeus
ENSELUG00000011540	cnot4b	65	90.957	ENSCHOG00000010412	CNOT4	68	90.957	Choloepus_hoffmanni
ENSELUG00000011540	cnot4b	100	66.256	ENSCPBG00000004959	CNOT4	100	73.314	Chrysemys_picta_bellii
ENSELUG00000011540	cnot4b	97	71.508	ENSCANG00000029319	CNOT4	96	79.153	Colobus_angolensis_palliatus
ENSELUG00000011540	cnot4b	98	71.625	ENSCGRG00001014651	Cnot4	100	73.887	Cricetulus_griseus_chok1gshd
ENSELUG00000011540	cnot4b	98	71.625	ENSCGRG00000005727	Cnot4	100	73.887	Cricetulus_griseus_crigri
ENSELUG00000011540	cnot4b	81	92.075	ENSCSEG00000015080	cnot4a	89	92.075	Cynoglossus_semilaevis
ENSELUG00000011540	cnot4b	95	89.668	ENSCVAG00000009399	cnot4a	100	76.855	Cyprinodon_variegatus
ENSELUG00000011540	cnot4b	96	89.781	ENSDARG00000007045	cnot4a	88	89.781	Danio_rerio
ENSELUG00000011540	cnot4b	98	89.493	ENSDARG00000007639	cnot4b	89	89.493	Danio_rerio
ENSELUG00000011540	cnot4b	97	71.788	ENSDNOG00000009409	CNOT4	100	73.314	Dasypus_novemcinctus
ENSELUG00000011540	cnot4b	97	72.394	ENSDORG00000012268	Cnot4	100	74.184	Dipodomys_ordii
ENSELUG00000011540	cnot4b	96	67.598	ENSETEG00000013407	CNOT4	94	68.915	Echinops_telfairi
ENSELUG00000011540	cnot4b	97	71.508	ENSEASG00005014430	CNOT4	94	85.199	Equus_asinus_asinus
ENSELUG00000011540	cnot4b	97	71.508	ENSECAG00000020262	CNOT4	100	73.235	Equus_caballus
ENSELUG00000011540	cnot4b	97	72.113	ENSFCAG00000011904	CNOT4	100	73.669	Felis_catus
ENSELUG00000011540	cnot4b	100	59.231	ENSFALG00000011194	CNOT4	100	58.324	Ficedula_albicollis
ENSELUG00000011540	cnot4b	97	72.113	ENSFDAG00000013525	CNOT4	100	73.887	Fukomys_damarensis
ENSELUG00000011540	cnot4b	95	89.668	ENSFHEG00000006608	cnot4a	95	89.706	Fundulus_heteroclitus
ENSELUG00000011540	cnot4b	96	90.441	ENSGMOG00000001329	cnot4a	100	61.392	Gadus_morhua
ENSELUG00000011540	cnot4b	100	66.010	ENSGALG00000011682	CNOT4	98	86.397	Gallus_gallus
ENSELUG00000011540	cnot4b	100	67.940	ENSGACG00000004276	cnot4a	96	89.668	Gasterosteus_aculeatus
ENSELUG00000011540	cnot4b	100	66.256	ENSGAGG00000017331	CNOT4	98	86.397	Gopherus_agassizii
ENSELUG00000011540	cnot4b	92	68.197	ENSGGOG00000000142	CNOT4	97	74.863	Gorilla_gorilla
ENSELUG00000011540	cnot4b	96	89.455	ENSHBUG00000000027	cnot4a	95	92.075	Haplochromis_burtoni
ENSELUG00000011540	cnot4b	97	72.113	ENSHGLG00000011533	CNOT4	100	73.887	Heterocephalus_glaber_female
ENSELUG00000011540	cnot4b	84	70.219	ENSHGLG00100013058	CNOT4	96	73.235	Heterocephalus_glaber_male
ENSELUG00000011540	cnot4b	94	91.321	ENSHCOG00000015815	cnot4a	95	91.321	Hippocampus_comes
ENSELUG00000011540	cnot4b	97	87.189	ENSIPUG00000016994	cnot4b	90	87.189	Ictalurus_punctatus
ENSELUG00000011540	cnot4b	83	92.045	ENSIPUG00000006393	cnot4	94	92.045	Ictalurus_punctatus
ENSELUG00000011540	cnot4b	97	72.113	ENSSTOG00000007717	CNOT4	100	73.887	Ictidomys_tridecemlineatus
ENSELUG00000011540	cnot4b	97	72.113	ENSJJAG00000016618	Cnot4	100	73.887	Jaculus_jaculus
ENSELUG00000011540	cnot4b	83	70.739	ENSJJAG00000019991	-	95	72.700	Jaculus_jaculus
ENSELUG00000011540	cnot4b	89	90.037	ENSKMAG00000004581	cnot4a	96	88.489	Kryptolebias_marmoratus
ENSELUG00000011540	cnot4b	100	63.496	ENSLBEG00000009999	cnot4a	88	90.037	Labrus_bergylta
ENSELUG00000011540	cnot4b	100	62.753	ENSLACG00000002647	CNOT4	99	62.078	Latimeria_chalumnae
ENSELUG00000011540	cnot4b	97	87.197	ENSLOCG00000016126	cnot4a	90	87.197	Lepisosteus_oculatus
ENSELUG00000011540	cnot4b	97	71.508	ENSLAFG00000000709	CNOT4	100	73.021	Loxodonta_africana
ENSELUG00000011540	cnot4b	97	72.113	ENSMFAG00000046349	CNOT4	96	79.153	Macaca_fascicularis
ENSELUG00000011540	cnot4b	97	71.508	ENSMMUG00000016181	CNOT4	96	79.153	Macaca_mulatta
ENSELUG00000011540	cnot4b	97	72.113	ENSMNEG00000042164	CNOT4	96	79.153	Macaca_nemestrina
ENSELUG00000011540	cnot4b	97	71.508	ENSMLEG00000032709	CNOT4	96	79.153	Mandrillus_leucophaeus
ENSELUG00000011540	cnot4b	100	68.333	ENSMAMG00000023194	cnot4a	95	92.075	Mastacembelus_armatus
ENSELUG00000011540	cnot4b	96	89.455	ENSMZEG00005007312	cnot4a	95	86.038	Maylandia_zebra
ENSELUG00000011540	cnot4b	100	59.076	ENSMGAG00000011788	CNOT4	100	58.122	Meleagris_gallopavo
ENSELUG00000011540	cnot4b	97	72.113	ENSMAUG00000020415	Cnot4	100	73.887	Mesocricetus_auratus
ENSELUG00000011540	cnot4b	97	71.508	ENSMICG00000001667	CNOT4	100	76.566	Microcebus_murinus
ENSELUG00000011540	cnot4b	98	71.625	ENSMOCG00000020955	Cnot4	100	73.887	Microtus_ochrogaster
ENSELUG00000011540	cnot4b	74	89.299	ENSMMOG00000014565	cnot4a	89	89.299	Mola_mola
ENSELUG00000011540	cnot4b	100	66.005	ENSMODG00000014068	CNOT4	98	86.347	Monodelphis_domestica
ENSELUG00000011540	cnot4b	92	62.319	ENSMALG00000011662	cnot4a	74	90.406	Monopterus_albus
ENSELUG00000011540	cnot4b	98	71.625	MGP_CAROLIEiJ_G0028217	Cnot4	100	73.887	Mus_caroli
ENSELUG00000011540	cnot4b	98	71.625	ENSMUSG00000038784	Cnot4	100	73.887	Mus_musculus
ENSELUG00000011540	cnot4b	98	71.625	MGP_PahariEiJ_G0021974	Cnot4	100	73.887	Mus_pahari
ENSELUG00000011540	cnot4b	98	71.625	MGP_SPRETEiJ_G0029216	Cnot4	100	73.887	Mus_spretus
ENSELUG00000011540	cnot4b	97	72.113	ENSMPUG00000004089	CNOT4	100	73.669	Mustela_putorius_furo
ENSELUG00000011540	cnot4b	97	71.508	ENSMLUG00000008260	CNOT4	100	73.021	Myotis_lucifugus
ENSELUG00000011540	cnot4b	97	72.394	ENSNGAG00000015030	Cnot4	100	74.184	Nannospalax_galili
ENSELUG00000011540	cnot4b	100	63.442	ENSNBRG00000021144	cnot4a	95	86.038	Neolamprologus_brichardi
ENSELUG00000011540	cnot4b	98	70.765	ENSNLEG00000013352	CNOT4	96	78.502	Nomascus_leucogenys
ENSELUG00000011540	cnot4b	85	66.810	ENSOPRG00000001023	CNOT4	81	66.810	Ochotona_princeps
ENSELUG00000011540	cnot4b	97	72.113	ENSODEG00000012975	CNOT4	100	73.669	Octodon_degus
ENSELUG00000011540	cnot4b	96	89.455	ENSONIG00000008656	cnot4a	86	92.075	Oreochromis_niloticus
ENSELUG00000011540	cnot4b	100	66.501	ENSOANG00000005006	CNOT4	100	73.887	Ornithorhynchus_anatinus
ENSELUG00000011540	cnot4b	97	72.113	ENSOCUG00000013448	CNOT4	100	73.669	Oryctolagus_cuniculus
ENSELUG00000011540	cnot4b	100	78.078	ENSORLG00000003727	cnot4a	97	88.489	Oryzias_latipes
ENSELUG00000011540	cnot4b	100	77.778	ENSORLG00020015684	cnot4a	97	88.129	Oryzias_latipes_hni
ENSELUG00000011540	cnot4b	100	77.778	ENSORLG00015008470	cnot4a	97	88.129	Oryzias_latipes_hsok
ENSELUG00000011540	cnot4b	100	77.778	ENSOMEG00000011084	cnot4a	96	88.129	Oryzias_melastigma
ENSELUG00000011540	cnot4b	97	71.508	ENSOGAG00000015499	CNOT4	100	73.235	Otolemur_garnettii
ENSELUG00000011540	cnot4b	97	71.508	ENSOARG00000008803	CNOT4	100	73.235	Ovis_aries
ENSELUG00000011540	cnot4b	97	71.508	ENSPPAG00000041937	CNOT4	96	79.153	Pan_paniscus
ENSELUG00000011540	cnot4b	97	71.508	ENSPPRG00000023940	CNOT4	100	73.021	Panthera_pardus
ENSELUG00000011540	cnot4b	97	72.113	ENSPTIG00000016601	CNOT4	100	73.669	Panthera_tigris_altaica
ENSELUG00000011540	cnot4b	97	71.508	ENSPTRG00000019727	CNOT4	96	79.153	Pan_troglodytes
ENSELUG00000011540	cnot4b	97	71.508	ENSPANG00000017724	CNOT4	96	79.153	Papio_anubis
ENSELUG00000011540	cnot4b	100	86.545	ENSPKIG00000018137	cnot4a	100	74.018	Paramormyrops_kingsleyae
ENSELUG00000011540	cnot4b	100	59.912	ENSPSIG00000011256	CNOT4	100	58.186	Pelodiscus_sinensis
ENSELUG00000011540	cnot4b	100	66.236	ENSPMGG00000005671	cnot4a	96	87.778	Periophthalmus_magnuspinnatus
ENSELUG00000011540	cnot4b	98	71.901	ENSPEMG00000021566	Cnot4	100	74.184	Peromyscus_maniculatus_bairdii
ENSELUG00000011540	cnot4b	100	67.100	ENSPCIG00000029622	CNOT4	96	73.669	Phascolarctos_cinereus
ENSELUG00000011540	cnot4b	100	62.732	ENSPFOG00000002228	cnot4a	88	90.037	Poecilia_formosa
ENSELUG00000011540	cnot4b	95	90.037	ENSPLAG00000001780	cnot4a	96	89.416	Poecilia_latipinna
ENSELUG00000011540	cnot4b	100	68.254	ENSPMEG00000006852	cnot4a	96	89.416	Poecilia_mexicana
ENSELUG00000011540	cnot4b	95	90.037	ENSPREG00000008171	cnot4a	96	88.603	Poecilia_reticulata
ENSELUG00000011540	cnot4b	97	72.113	ENSPPYG00000018026	CNOT4	100	73.887	Pongo_abelii
ENSELUG00000011540	cnot4b	97	71.508	ENSPCOG00000019907	CNOT4	100	76.566	Propithecus_coquereli
ENSELUG00000011540	cnot4b	93	70.765	ENSPVAG00000004905	CNOT4	93	73.021	Pteropus_vampyrus
ENSELUG00000011540	cnot4b	96	89.455	ENSPNYG00000004276	cnot4a	95	86.038	Pundamilia_nyererei
ENSELUG00000011540	cnot4b	95	90.842	ENSPNAG00000008679	cnot4b	96	90.809	Pygocentrus_nattereri
ENSELUG00000011540	cnot4b	85	91.698	ENSPNAG00000020433	cnot4a	95	91.698	Pygocentrus_nattereri
ENSELUG00000011540	cnot4b	98	71.625	ENSRNOG00000010795	Cnot4	100	73.887	Rattus_norvegicus
ENSELUG00000011540	cnot4b	97	71.508	ENSRBIG00000043977	CNOT4	96	79.153	Rhinopithecus_bieti
ENSELUG00000011540	cnot4b	97	72.113	ENSSBOG00000020808	CNOT4	99	75.346	Saimiri_boliviensis_boliviensis
ENSELUG00000011540	cnot4b	100	66.501	ENSSHAG00000013639	CNOT4	100	73.669	Sarcophilus_harrisii
ENSELUG00000011540	cnot4b	100	87.956	ENSSFOG00015002019	cnot4a	100	77.612	Scleropages_formosus
ENSELUG00000011540	cnot4b	96	89.091	ENSSFOG00015017285	CNOT4	96	88.129	Scleropages_formosus
ENSELUG00000011540	cnot4b	98	69.697	ENSSMAG00000008614	cnot4a	88	90.110	Scophthalmus_maximus
ENSELUG00000011540	cnot4b	90	92.045	ENSSDUG00000018585	cnot4b	98	92.045	Seriola_dumerili
ENSELUG00000011540	cnot4b	95	90.741	ENSSDUG00000022635	cnot4a	95	92.075	Seriola_dumerili
ENSELUG00000011540	cnot4b	100	56.460	ENSSLDG00000014347	cnot4b	100	55.857	Seriola_lalandi_dorsalis
ENSELUG00000011540	cnot4b	95	90.741	ENSSLDG00000015770	cnot4a	95	92.075	Seriola_lalandi_dorsalis
ENSELUG00000011540	cnot4b	100	66.236	ENSSPUG00000004677	CNOT4	100	73.021	Sphenodon_punctatus
ENSELUG00000011540	cnot4b	100	68.017	ENSSPAG00000012329	cnot4a	95	92.075	Stegastes_partitus
ENSELUG00000011540	cnot4b	97	71.508	ENSSSCG00000021354	CNOT4	100	73.235	Sus_scrofa
ENSELUG00000011540	cnot4b	100	59.231	ENSTGUG00000009161	CNOT4	100	58.434	Taeniopygia_guttata
ENSELUG00000011540	cnot4b	84	91.698	ENSTRUG00000016861	cnot4a	95	91.698	Takifugu_rubripes
ENSELUG00000011540	cnot4b	87	84.982	ENSTNIG00000016000	cnot4a	96	84.982	Tetraodon_nigroviridis
ENSELUG00000011540	cnot4b	92	68.994	ENSTBEG00000002202	CNOT4	93	71.848	Tupaia_belangeri
ENSELUG00000011540	cnot4b	92	71.788	ENSTTRG00000005122	CNOT4	92	73.314	Tursiops_truncatus
ENSELUG00000011540	cnot4b	97	71.508	ENSUAMG00000026759	CNOT4	100	73.021	Ursus_americanus
ENSELUG00000011540	cnot4b	97	71.508	ENSUMAG00000015351	CNOT4	96	73.235	Ursus_maritimus
ENSELUG00000011540	cnot4b	97	72.113	ENSVVUG00000006200	CNOT4	100	73.669	Vulpes_vulpes
ENSELUG00000011540	cnot4b	97	86.716	ENSXETG00000010594	cnot4	85	86.716	Xenopus_tropicalis
ENSELUG00000011540	cnot4b	74	89.051	ENSXCOG00000020824	cnot4a	92	89.051	Xiphophorus_couchianus
ENSELUG00000011540	cnot4b	95	90.037	ENSXMAG00000016984	cnot4a	96	89.416	Xiphophorus_maculatus