EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000012014 (Gene tree)
Gene ID: 105020176
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 19185 bases
Position: chrLG23:6079641-6098825
Accession: 105020176
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000011637	Upf2	PF04050.14	1.8e-32	1	1
ENSELUP00000011685	Upf2	PF04050.14	1.8e-32	1	1
ENSELUP00000011619	Upf2	PF04050.14	1.9e-32	1	1
ENSELUP00000011619	MIF4G	PF02854.19	5.3e-79	1	3
ENSELUP00000011619	MIF4G	PF02854.19	5.3e-79	2	3
ENSELUP00000011619	MIF4G	PF02854.19	5.3e-79	3	3
ENSELUP00000011637	MIF4G	PF02854.19	5.7e-79	1	3
ENSELUP00000011637	MIF4G	PF02854.19	5.7e-79	2	3
ENSELUP00000011637	MIF4G	PF02854.19	5.7e-79	3	3
ENSELUP00000011685	MIF4G	PF02854.19	5.7e-79	1	3
ENSELUP00000011685	MIF4G	PF02854.19	5.7e-79	2	3
ENSELUP00000011685	MIF4G	PF02854.19	5.7e-79	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000000121	UPF2-201	4143	XM_010886947	ENSELUP00000011637	1278 (aa)	XP_010885249	-
ENSELUT00000000150	UPF2-202	3807	-	ENSELUP00000011619	1268 (aa)	-	-
ENSELUT00000019800	UPF2-203	3992	XM_010886946	ENSELUP00000011685	1278 (aa)	XP_010885248	-

Gene Model

Click here to download ENSELUG00000012014's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03013	RNA transport	KEGG
els03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000012014's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000012014	UPF2	100	81.366	ENSG00000151461	UPF2	99	81.499	Homo_sapiens
ENSELUG00000012014	UPF2	99	85.500	ENSAPOG00000015837	UPF2	100	83.997	Acanthochromis_polyacanthus
ENSELUG00000012014	UPF2	100	82.115	ENSAMEG00000004586	UPF2	99	81.783	Ailuropoda_melanoleuca
ENSELUG00000012014	UPF2	99	89.227	ENSACIG00000018078	UPF2	100	88.759	Amphilophus_citrinellus
ENSELUG00000012014	UPF2	100	89.938	ENSAOCG00000016766	UPF2	99	89.548	Amphiprion_ocellaris
ENSELUG00000012014	UPF2	100	90.016	ENSAPEG00000019084	UPF2	99	89.626	Amphiprion_percula
ENSELUG00000012014	UPF2	100	91.342	ENSATEG00000021677	UPF2	99	89.236	Anabas_testudineus
ENSELUG00000012014	UPF2	100	78.123	ENSAPLG00000010287	UPF2	99	77.682	Anas_platyrhynchos
ENSELUG00000012014	UPF2	100	82.440	ENSACAG00000009259	UPF2	99	81.861	Anolis_carolinensis
ENSELUG00000012014	UPF2	97	76.485	ENSANAG00000028451	UPF2	99	76.206	Aotus_nancymaae
ENSELUG00000012014	UPF2	100	89.236	ENSACLG00000012696	UPF2	99	88.768	Astatotilapia_calliptera
ENSELUG00000012014	UPF2	99	88.698	ENSAMXG00000013700	UPF2	99	87.997	Astyanax_mexicanus
ENSELUG00000012014	UPF2	100	82.271	ENSBTAG00000000288	UPF2	99	81.861	Bos_taurus
ENSELUG00000012014	UPF2	100	81.493	ENSCJAG00000020685	UPF2	99	81.797	Callithrix_jacchus
ENSELUG00000012014	UPF2	100	82.271	ENSCAFG00000004839	UPF2	99	81.861	Canis_familiaris
ENSELUG00000012014	UPF2	95	87.374	ENSCAFG00020005882	UPF2	99	88.384	Canis_lupus_dingo
ENSELUG00000012014	UPF2	100	82.284	ENSCHIG00000020359	UPF2	99	81.875	Capra_hircus
ENSELUG00000012014	UPF2	100	81.882	ENSTSYG00000000935	UPF2	97	88.202	Carlito_syrichta
ENSELUG00000012014	UPF2	91	74.446	ENSCAPG00000016658	UPF2	96	73.537	Cavia_aperea
ENSELUG00000012014	UPF2	99	79.421	ENSCPOG00000008809	UPF2	100	79.150	Cavia_porcellus
ENSELUG00000012014	UPF2	96	84.082	ENSCCAG00000035991	UPF2	99	84.886	Cebus_capucinus
ENSELUG00000012014	UPF2	100	81.832	ENSCATG00000032679	UPF2	99	81.499	Cercocebus_atys
ENSELUG00000012014	UPF2	100	80.793	ENSCLAG00000011434	UPF2	99	80.766	Chinchilla_lanigera
ENSELUG00000012014	UPF2	100	81.832	ENSCSAG00000013372	UPF2	99	81.499	Chlorocebus_sabaeus
ENSELUG00000012014	UPF2	85	88.470	ENSCHOG00000000422	UPF2	82	90.421	Choloepus_hoffmanni
ENSELUG00000012014	UPF2	99	82.101	ENSCPBG00000027823	UPF2	100	81.401	Chrysemys_picta_bellii
ENSELUG00000012014	UPF2	78	48.625	ENSCSAVG00000007772	-	71	52.078	Ciona_savignyi
ENSELUG00000012014	UPF2	99	76.561	ENSCANG00000040396	UPF2	100	76.659	Colobus_angolensis_palliatus
ENSELUG00000012014	UPF2	100	81.790	ENSCGRG00001019347	Upf2	99	80.986	Cricetulus_griseus_chok1gshd
ENSELUG00000012014	UPF2	100	81.790	ENSCGRG00000017993	Upf2	99	80.986	Cricetulus_griseus_crigri
ENSELUG00000012014	UPF2	99	81.476	ENSCSEG00000003520	UPF2	99	80.186	Cynoglossus_semilaevis
ENSELUG00000012014	UPF2	99	88.452	ENSCVAG00000006167	UPF2	100	87.795	Cyprinodon_variegatus
ENSELUG00000012014	UPF2	100	82.193	ENSDNOG00000018160	UPF2	99	81.783	Dasypus_novemcinctus
ENSELUG00000012014	UPF2	100	81.882	ENSDORG00000002478	Upf2	99	81.314	Dipodomys_ordii
ENSELUG00000012014	UPF2	73	91.241	ENSETEG00000011583	-	62	91.176	Echinops_telfairi
ENSELUG00000012014	UPF2	64	70.861	ENSEBUG00000012448	-	93	68.722	Eptatretus_burgeri
ENSELUG00000012014	UPF2	100	81.415	ENSEASG00005019274	UPF2	99	82.095	Equus_asinus_asinus
ENSELUG00000012014	UPF2	100	81.415	ENSECAG00000017022	UPF2	99	81.079	Equus_caballus
ENSELUG00000012014	UPF2	82	78.505	ENSEEUG00000007819	UPF2	76	78.662	Erinaceus_europaeus
ENSELUG00000012014	UPF2	100	86.264	ENSFCAG00000005785	UPF2	99	81.626	Felis_catus
ENSELUG00000012014	UPF2	100	83.048	ENSFALG00000001889	UPF2	98	82.408	Ficedula_albicollis
ENSELUG00000012014	UPF2	100	80.327	ENSFDAG00000014348	UPF2	99	79.593	Fukomys_damarensis
ENSELUG00000012014	UPF2	99	89.230	ENSFHEG00000009826	UPF2	99	87.569	Fundulus_heteroclitus
ENSELUG00000012014	UPF2	91	87.435	ENSGMOG00000005557	UPF2	100	86.169	Gadus_morhua
ENSELUG00000012014	UPF2	100	83.294	ENSGALG00000033772	UPF2	99	82.673	Gallus_gallus
ENSELUG00000012014	UPF2	100	86.973	ENSGAFG00000020867	UPF2	99	87.276	Gambusia_affinis
ENSELUG00000012014	UPF2	90	90.563	ENSGACG00000001080	UPF2	100	88.025	Gasterosteus_aculeatus
ENSELUG00000012014	UPF2	100	82.207	ENSGAGG00000002700	UPF2	99	81.719	Gopherus_agassizii
ENSELUG00000012014	UPF2	100	81.366	ENSGGOG00000001479	UPF2	99	81.499	Gorilla_gorilla
ENSELUG00000012014	UPF2	99	89.305	ENSHBUG00000004249	UPF2	100	88.837	Haplochromis_burtoni
ENSELUG00000012014	UPF2	100	80.793	ENSHGLG00000015176	-	99	80.453	Heterocephalus_glaber_female
ENSELUG00000012014	UPF2	100	72.240	ENSHGLG00000003822	-	99	72.084	Heterocephalus_glaber_female
ENSELUG00000012014	UPF2	99	78.366	ENSHGLG00100010036	UPF2	100	77.621	Heterocephalus_glaber_male
ENSELUG00000012014	UPF2	100	88.162	ENSHCOG00000004025	UPF2	99	88.318	Hippocampus_comes
ENSELUG00000012014	UPF2	100	87.150	ENSIPUG00000015524	UPF2	99	86.573	Ictalurus_punctatus
ENSELUG00000012014	UPF2	100	81.182	ENSSTOG00000013075	UPF2	99	81.079	Ictidomys_tridecemlineatus
ENSELUG00000012014	UPF2	100	81.026	ENSJJAG00000004913	Upf2	99	80.282	Jaculus_jaculus
ENSELUG00000012014	UPF2	99	88.915	ENSKMAG00000001071	UPF2	99	86.871	Kryptolebias_marmoratus
ENSELUG00000012014	UPF2	100	88.534	ENSLBEG00000016394	-	99	88.456	Labrus_bergylta
ENSELUG00000012014	UPF2	80	86.092	ENSLBEG00000000728	-	93	86.489	Labrus_bergylta
ENSELUG00000012014	UPF2	99	76.383	ENSLACG00000015945	UPF2	100	75.350	Latimeria_chalumnae
ENSELUG00000012014	UPF2	99	88.531	ENSLOCG00000015698	UPF2	99	88.217	Lepisosteus_oculatus
ENSELUG00000012014	UPF2	100	81.832	ENSMFAG00000043865	UPF2	99	81.499	Macaca_fascicularis
ENSELUG00000012014	UPF2	100	81.832	ENSMMUG00000008241	UPF2	99	81.499	Macaca_mulatta
ENSELUG00000012014	UPF2	80	82.353	ENSMNEG00000008062	UPF2	99	81.667	Macaca_nemestrina
ENSELUG00000012014	UPF2	99	79.128	ENSMLEG00000036120	UPF2	99	83.614	Mandrillus_leucophaeus
ENSELUG00000012014	UPF2	100	90.718	ENSMAMG00000018276	UPF2	99	88.066	Mastacembelus_armatus
ENSELUG00000012014	UPF2	100	89.236	ENSMZEG00005021595	UPF2	99	88.768	Maylandia_zebra
ENSELUG00000012014	UPF2	100	83.294	ENSMGAG00000004573	UPF2	100	83.137	Meleagris_gallopavo
ENSELUG00000012014	UPF2	100	79.922	ENSMAUG00000016512	Upf2	99	78.951	Mesocricetus_auratus
ENSELUG00000012014	UPF2	95	86.869	ENSMICG00000001716	UPF2	99	88.384	Microcebus_murinus
ENSELUG00000012014	UPF2	100	80.934	ENSMOCG00000008263	Upf2	99	79.969	Microtus_ochrogaster
ENSELUG00000012014	UPF2	99	87.994	ENSMMOG00000006528	UPF2	100	85.071	Mola_mola
ENSELUG00000012014	UPF2	100	82.348	ENSMODG00000016794	UPF2	99	81.861	Monodelphis_domestica
ENSELUG00000012014	UPF2	99	90.307	ENSMALG00000002663	UPF2	100	88.583	Monopterus_albus
ENSELUG00000012014	UPF2	100	81.946	MGP_CAROLIEiJ_G0023157	Upf2	99	83.460	Mus_caroli
ENSELUG00000012014	UPF2	100	81.946	ENSMUSG00000043241	Upf2	99	84.030	Mus_musculus
ENSELUG00000012014	UPF2	100	82.023	MGP_PahariEiJ_G0019217	Upf2	99	84.030	Mus_pahari
ENSELUG00000012014	UPF2	100	82.179	MGP_SPRETEiJ_G0024075	Upf2	99	84.030	Mus_spretus
ENSELUG00000012014	UPF2	100	82.037	ENSMPUG00000001064	UPF2	99	81.704	Mustela_putorius_furo
ENSELUG00000012014	UPF2	99	82.002	ENSMLUG00000000228	UPF2	100	81.357	Myotis_lucifugus
ENSELUG00000012014	UPF2	100	89.314	ENSNBRG00000013629	UPF2	99	88.846	Neolamprologus_brichardi
ENSELUG00000012014	UPF2	100	81.910	ENSNLEG00000012058	UPF2	99	81.577	Nomascus_leucogenys
ENSELUG00000012014	UPF2	52	93.846	ENSMEUG00000002180	-	58	93.846	Notamacropus_eugenii
ENSELUG00000012014	UPF2	72	92.958	ENSOPRG00000006801	-	82	92.958	Ochotona_princeps
ENSELUG00000012014	UPF2	100	80.575	ENSODEG00000001290	UPF2	99	80.610	Octodon_degus
ENSELUG00000012014	UPF2	100	88.924	ENSONIG00000017991	UPF2	99	88.612	Oreochromis_niloticus
ENSELUG00000012014	UPF2	99	80.934	ENSOCUG00000006230	UPF2	100	81.167	Oryctolagus_cuniculus
ENSELUG00000012014	UPF2	100	89.010	ENSORLG00000017189	UPF2	99	88.698	Oryzias_latipes
ENSELUG00000012014	UPF2	100	89.088	ENSORLG00020005969	UPF2	99	88.776	Oryzias_latipes_hni
ENSELUG00000012014	UPF2	100	89.088	ENSORLG00015005713	UPF2	99	88.776	Oryzias_latipes_hsok
ENSELUG00000012014	UPF2	99	85.402	ENSOMEG00000023420	UPF2	98	85.714	Oryzias_melastigma
ENSELUG00000012014	UPF2	100	82.115	ENSOGAG00000005796	UPF2	99	81.626	Otolemur_garnettii
ENSELUG00000012014	UPF2	100	82.157	ENSOARG00000014587	UPF2	99	81.747	Ovis_aries
ENSELUG00000012014	UPF2	99	78.193	ENSPPAG00000037953	UPF2	100	78.984	Pan_paniscus
ENSELUG00000012014	UPF2	100	81.493	ENSPPRG00000000690	UPF2	99	81.626	Panthera_pardus
ENSELUG00000012014	UPF2	100	81.493	ENSPTIG00000008867	UPF2	99	81.626	Panthera_tigris_altaica
ENSELUG00000012014	UPF2	100	81.366	ENSPTRG00000002291	UPF2	99	81.499	Pan_troglodytes
ENSELUG00000012014	UPF2	100	81.755	ENSPANG00000023399	UPF2	99	81.421	Papio_anubis
ENSELUG00000012014	UPF2	100	86.916	ENSPKIG00000025502	UPF2	99	85.737	Paramormyrops_kingsleyae
ENSELUG00000012014	UPF2	59	80.552	ENSPSIG00000015158	UPF2	95	79.632	Pelodiscus_sinensis
ENSELUG00000012014	UPF2	99	85.150	ENSPMGG00000005259	UPF2	100	84.676	Periophthalmus_magnuspinnatus
ENSELUG00000012014	UPF2	93	75.216	ENSPEMG00000015731	Upf2	99	75.216	Peromyscus_maniculatus_bairdii
ENSELUG00000012014	UPF2	100	82.271	ENSPCIG00000006656	UPF2	100	81.634	Phascolarctos_cinereus
ENSELUG00000012014	UPF2	100	87.207	ENSPFOG00000017118	UPF2	99	87.666	Poecilia_formosa
ENSELUG00000012014	UPF2	100	87.207	ENSPLAG00000005094	UPF2	99	87.666	Poecilia_latipinna
ENSELUG00000012014	UPF2	100	87.051	ENSPMEG00000017009	UPF2	99	87.510	Poecilia_mexicana
ENSELUG00000012014	UPF2	99	87.293	ENSPREG00000021880	UPF2	100	87.599	Poecilia_reticulata
ENSELUG00000012014	UPF2	66	84.416	ENSPPYG00000002089	-	99	83.929	Pongo_abelii
ENSELUG00000012014	UPF2	100	69.930	ENSPCAG00000000684	UPF2	99	70.000	Procavia_capensis
ENSELUG00000012014	UPF2	99	79.576	ENSPCOG00000021656	UPF2	100	79.734	Propithecus_coquereli
ENSELUG00000012014	UPF2	100	75.758	ENSPVAG00000017286	UPF2	99	75.391	Pteropus_vampyrus
ENSELUG00000012014	UPF2	99	86.807	ENSPNYG00000017096	UPF2	100	86.339	Pundamilia_nyererei
ENSELUG00000012014	UPF2	100	88.863	ENSPNAG00000009357	UPF2	99	87.617	Pygocentrus_nattereri
ENSELUG00000012014	UPF2	99	78.003	ENSRNOG00000023593	Upf2	99	94.382	Rattus_norvegicus
ENSELUG00000012014	UPF2	99	80.482	ENSRBIG00000037780	UPF2	100	79.750	Rhinopithecus_bieti
ENSELUG00000012014	UPF2	100	81.444	ENSRROG00000043547	UPF2	99	80.718	Rhinopithecus_roxellana
ENSELUG00000012014	UPF2	100	80.886	ENSSBOG00000020012	UPF2	99	80.796	Saimiri_boliviensis_boliviensis
ENSELUG00000012014	UPF2	100	88.199	ENSSFOG00015023788	upf2	100	87.285	Scleropages_formosus
ENSELUG00000012014	UPF2	90	90.147	ENSSMAG00000007637	UPF2	100	87.839	Scophthalmus_maximus
ENSELUG00000012014	UPF2	100	89.704	ENSSDUG00000017244	UPF2	99	88.924	Seriola_dumerili
ENSELUG00000012014	UPF2	99	87.175	ENSSLDG00000016866	UPF2	100	85.973	Seriola_lalandi_dorsalis
ENSELUG00000012014	UPF2	100	81.352	ENSSARG00000008615	UPF2	99	81.314	Sorex_araneus
ENSELUG00000012014	UPF2	94	88.827	ENSSPUG00000014544	UPF2	99	79.082	Sphenodon_punctatus
ENSELUG00000012014	UPF2	68	84.642	ENSSSCG00000011117	-	99	84.289	Sus_scrofa
ENSELUG00000012014	UPF2	99	82.944	ENSTGUG00000002163	-	100	82.381	Taeniopygia_guttata
ENSELUG00000012014	UPF2	100	87.832	ENSTRUG00000007519	UPF2	99	86.583	Takifugu_rubripes
ENSELUG00000012014	UPF2	100	85.981	ENSTNIG00000004453	UPF2	99	85.514	Tetraodon_nigroviridis
ENSELUG00000012014	UPF2	93	74.415	ENSTBEG00000012679	UPF2	93	73.339	Tupaia_belangeri
ENSELUG00000012014	UPF2	100	81.041	ENSTTRG00000016388	UPF2	99	80.625	Tursiops_truncatus
ENSELUG00000012014	UPF2	87	94.382	ENSUAMG00000023560	UPF2	98	94.382	Ursus_americanus
ENSELUG00000012014	UPF2	100	82.193	ENSUMAG00000012953	UPF2	95	81.861	Ursus_maritimus
ENSELUG00000012014	UPF2	82	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSELUG00000012014	UPF2	100	82.271	ENSVVUG00000006166	UPF2	99	81.861	Vulpes_vulpes
ENSELUG00000012014	UPF2	100	77.838	ENSXETG00000033103	UPF2	99	75.304	Xenopus_tropicalis
ENSELUG00000012014	UPF2	99	87.432	ENSXCOG00000011604	UPF2	100	87.031	Xiphophorus_couchianus
ENSELUG00000012014	UPF2	100	87.598	ENSXMAG00000017209	UPF2	99	87.666	Xiphophorus_maculatus