EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000012271 (Gene tree)
Gene ID: 105012753
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 15205 bases
Position: chrLG10:11004663-11019867
Accession: 105012753
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000033764	CPSF_A	PF03178.15	1.9e-92	1	1
ENSELUP00000011841	CPSF_A	PF03178.15	2e-92	1	1
ENSELUP00000033840	CPSF_A	PF03178.15	1.9e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000019984	-	4776	XM_010873811	ENSELUP00000011841	1477 (aa)	XP_010872113	UPI000578037F
ENSELUT00000019914	-	4335	-	ENSELUP00000033764	1444 (aa)	-	-
ENSELUT00000020050	-	4944	-	ENSELUP00000033840	1399 (aa)	-	-

Gene Model

Click here to download ENSELUG00000012271's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000012271's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000012271	cpsf1	100	78.645	ENSG00000071894	CPSF1	100	79.630	Homo_sapiens
ENSELUG00000012271	cpsf1	100	86.223	ENSAPOG00000019621	cpsf1	100	86.492	Acanthochromis_polyacanthus
ENSELUG00000012271	cpsf1	100	77.104	ENSAMEG00000005557	CPSF1	99	77.353	Ailuropoda_melanoleuca
ENSELUG00000012271	cpsf1	100	84.732	ENSACIG00000006112	cpsf1	100	85.076	Amphilophus_citrinellus
ENSELUG00000012271	cpsf1	100	86.270	ENSAOCG00000007120	cpsf1	100	86.134	Amphiprion_ocellaris
ENSELUG00000012271	cpsf1	100	86.553	ENSAPEG00000005755	cpsf1	100	86.496	Amphiprion_percula
ENSELUG00000012271	cpsf1	100	86.299	ENSATEG00000011097	cpsf1	100	86.770	Anabas_testudineus
ENSELUG00000012271	cpsf1	93	73.935	ENSACAG00000009655	CPSF1	100	73.495	Anolis_carolinensis
ENSELUG00000012271	cpsf1	100	78.767	ENSANAG00000036514	CPSF1	100	78.562	Aotus_nancymaae
ENSELUG00000012271	cpsf1	100	86.239	ENSACLG00000012231	cpsf1	99	86.732	Astatotilapia_calliptera
ENSELUG00000012271	cpsf1	100	80.000	ENSAMXG00000008485	cpsf1	100	79.434	Astyanax_mexicanus
ENSELUG00000012271	cpsf1	100	77.471	ENSBTAG00000008355	CPSF1	100	77.881	Bos_taurus
ENSELUG00000012271	cpsf1	100	32.892	WBGene00022301	cpsf-1	99	40.845	Caenorhabditis_elegans
ENSELUG00000012271	cpsf1	100	78.767	ENSCJAG00000021421	CPSF1	100	78.493	Callithrix_jacchus
ENSELUG00000012271	cpsf1	100	78.658	ENSCAFG00000001600	CPSF1	100	77.867	Canis_familiaris
ENSELUG00000012271	cpsf1	100	78.659	ENSCAFG00020020821	CPSF1	100	78.181	Canis_lupus_dingo
ENSELUG00000012271	cpsf1	100	74.914	ENSCHIG00000015833	CPSF1	100	74.572	Capra_hircus
ENSELUG00000012271	cpsf1	100	78.745	ENSTSYG00000028560	CPSF1	100	80.556	Carlito_syrichta
ENSELUG00000012271	cpsf1	99	78.154	ENSCAPG00000014921	CPSF1	99	77.502	Cavia_aperea
ENSELUG00000012271	cpsf1	100	77.397	ENSCPOG00000011448	CPSF1	100	76.849	Cavia_porcellus
ENSELUG00000012271	cpsf1	100	78.767	ENSCCAG00000037658	CPSF1	100	79.817	Cebus_capucinus
ENSELUG00000012271	cpsf1	100	78.562	ENSCATG00000037234	CPSF1	100	79.630	Cercocebus_atys
ENSELUG00000012271	cpsf1	100	78.684	ENSCLAG00000012166	CPSF1	100	78.204	Chinchilla_lanigera
ENSELUG00000012271	cpsf1	100	78.630	ENSCSAG00000008502	CPSF1	100	78.082	Chlorocebus_sabaeus
ENSELUG00000012271	cpsf1	99	79.813	ENSCPBG00000018910	CPSF1	96	79.420	Chrysemys_picta_bellii
ENSELUG00000012271	cpsf1	96	48.323	ENSCING00000000514	-	100	47.701	Ciona_intestinalis
ENSELUG00000012271	cpsf1	99	48.219	ENSCSAVG00000002293	-	98	50.235	Ciona_savignyi
ENSELUG00000012271	cpsf1	100	76.045	ENSCANG00000032760	CPSF1	100	80.093	Colobus_angolensis_palliatus
ENSELUG00000012271	cpsf1	100	77.873	ENSCGRG00001016344	Cpsf1	100	77.382	Cricetulus_griseus_chok1gshd
ENSELUG00000012271	cpsf1	100	76.588	ENSCGRG00000003118	Cpsf1	100	76.011	Cricetulus_griseus_crigri
ENSELUG00000012271	cpsf1	100	84.934	ENSCSEG00000013464	cpsf1	100	84.589	Cynoglossus_semilaevis
ENSELUG00000012271	cpsf1	90	81.459	ENSCVAG00000014059	cpsf1	100	77.315	Cyprinodon_variegatus
ENSELUG00000012271	cpsf1	100	86.929	ENSDARG00000034178	cpsf1	100	86.739	Danio_rerio
ENSELUG00000012271	cpsf1	57	81.662	ENSDNOG00000043654	CPSF1	94	81.662	Dasypus_novemcinctus
ENSELUG00000012271	cpsf1	100	78.016	ENSDORG00000006278	Cpsf1	99	78.282	Dipodomys_ordii
ENSELUG00000012271	cpsf1	100	44.563	FBgn0024698	Cpsf160	100	44.630	Drosophila_melanogaster
ENSELUG00000012271	cpsf1	81	87.248	ENSETEG00000006022	CPSF1	83	87.248	Echinops_telfairi
ENSELUG00000012271	cpsf1	100	78.796	ENSEASG00005010774	CPSF1	100	78.249	Equus_asinus_asinus
ENSELUG00000012271	cpsf1	100	78.659	ENSECAG00000022209	CPSF1	100	78.112	Equus_caballus
ENSELUG00000012271	cpsf1	100	78.174	ENSEEUG00000000471	CPSF1	100	77.922	Erinaceus_europaeus
ENSELUG00000012271	cpsf1	100	78.615	ENSFDAG00000016060	CPSF1	100	78.410	Fukomys_damarensis
ENSELUG00000012271	cpsf1	100	84.080	ENSFHEG00000016801	cpsf1	100	83.563	Fundulus_heteroclitus
ENSELUG00000012271	cpsf1	100	85.714	ENSGMOG00000000796	cpsf1	100	85.695	Gadus_morhua
ENSELUG00000012271	cpsf1	96	87.500	ENSGAFG00000018890	cpsf1	100	87.500	Gambusia_affinis
ENSELUG00000012271	cpsf1	100	86.254	ENSGACG00000008703	cpsf1	100	85.888	Gasterosteus_aculeatus
ENSELUG00000012271	cpsf1	100	77.413	ENSGAGG00000004276	CPSF1	98	79.604	Gopherus_agassizii
ENSELUG00000012271	cpsf1	100	78.753	ENSGGOG00000016185	CPSF1	100	79.630	Gorilla_gorilla
ENSELUG00000012271	cpsf1	100	86.948	ENSHBUG00000018900	cpsf1	100	86.740	Haplochromis_burtoni
ENSELUG00000012271	cpsf1	100	78.821	ENSHGLG00000016139	CPSF1	100	78.273	Heterocephalus_glaber_female
ENSELUG00000012271	cpsf1	100	78.753	ENSHGLG00100009750	CPSF1	100	78.204	Heterocephalus_glaber_male
ENSELUG00000012271	cpsf1	100	84.468	ENSHCOG00000018509	cpsf1	100	84.331	Hippocampus_comes
ENSELUG00000012271	cpsf1	100	82.917	ENSIPUG00000011259	cpsf1	100	82.917	Ictalurus_punctatus
ENSELUG00000012271	cpsf1	100	77.881	ENSSTOG00000009957	CPSF1	99	78.076	Ictidomys_tridecemlineatus
ENSELUG00000012271	cpsf1	100	78.478	ENSJJAG00000023002	Cpsf1	100	77.930	Jaculus_jaculus
ENSELUG00000012271	cpsf1	93	83.573	ENSKMAG00000001940	cpsf1	100	83.573	Kryptolebias_marmoratus
ENSELUG00000012271	cpsf1	100	86.022	ENSLBEG00000003601	cpsf1	100	86.079	Labrus_bergylta
ENSELUG00000012271	cpsf1	87	77.515	ENSLACG00000000233	CPSF1	92	77.396	Latimeria_chalumnae
ENSELUG00000012271	cpsf1	100	81.166	ENSLOCG00000008484	cpsf1	100	80.926	Lepisosteus_oculatus
ENSELUG00000012271	cpsf1	100	78.801	ENSLAFG00000022601	CPSF1	99	78.187	Loxodonta_africana
ENSELUG00000012271	cpsf1	100	78.562	ENSMFAG00000037013	CPSF1	100	79.630	Macaca_fascicularis
ENSELUG00000012271	cpsf1	100	78.562	ENSMMUG00000007380	CPSF1	100	79.630	Macaca_mulatta
ENSELUG00000012271	cpsf1	100	78.459	ENSMNEG00000043564	CPSF1	100	79.630	Macaca_nemestrina
ENSELUG00000012271	cpsf1	100	78.562	ENSMLEG00000043010	CPSF1	100	79.630	Mandrillus_leucophaeus
ENSELUG00000012271	cpsf1	100	86.280	ENSMAMG00000003803	cpsf1	100	86.425	Mastacembelus_armatus
ENSELUG00000012271	cpsf1	100	84.047	ENSMZEG00005001168	cpsf1	100	83.840	Maylandia_zebra
ENSELUG00000012271	cpsf1	100	77.930	ENSMAUG00000003601	Cpsf1	100	77.450	Mesocricetus_auratus
ENSELUG00000012271	cpsf1	100	78.958	ENSMICG00000015767	CPSF1	100	78.478	Microcebus_murinus
ENSELUG00000012271	cpsf1	100	78.204	ENSMOCG00000022758	Cpsf1	100	77.793	Microtus_ochrogaster
ENSELUG00000012271	cpsf1	100	86.929	ENSMMOG00000021245	cpsf1	100	86.445	Mola_mola
ENSELUG00000012271	cpsf1	100	78.801	ENSMODG00000010755	CPSF1	100	78.732	Monodelphis_domestica
ENSELUG00000012271	cpsf1	100	85.887	ENSMALG00000020545	cpsf1	100	86.089	Monopterus_albus
ENSELUG00000012271	cpsf1	100	78.204	MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.724	Mus_caroli
ENSELUG00000012271	cpsf1	100	78.204	ENSMUSG00000034022	Cpsf1	100	77.724	Mus_musculus
ENSELUG00000012271	cpsf1	100	78.067	MGP_PahariEiJ_G0019946	Cpsf1	100	77.724	Mus_pahari
ENSELUG00000012271	cpsf1	100	78.273	MGP_SPRETEiJ_G0020839	Cpsf1	100	77.793	Mus_spretus
ENSELUG00000012271	cpsf1	99	77.938	ENSMPUG00000006419	CPSF1	93	78.551	Mustela_putorius_furo
ENSELUG00000012271	cpsf1	100	78.478	ENSNGAG00000022460	Cpsf1	100	77.999	Nannospalax_galili
ENSELUG00000012271	cpsf1	100	81.392	ENSNBRG00000000813	cpsf1	100	80.645	Neolamprologus_brichardi
ENSELUG00000012271	cpsf1	86	68.468	ENSNLEG00000010633	-	100	79.630	Nomascus_leucogenys
ENSELUG00000012271	cpsf1	85	87.791	ENSMEUG00000014922	CPSF1	85	87.791	Notamacropus_eugenii
ENSELUG00000012271	cpsf1	64	88.889	ENSOPRG00000004693	-	70	88.889	Ochotona_princeps
ENSELUG00000012271	cpsf1	100	78.801	ENSODEG00000013995	CPSF1	100	78.341	Octodon_degus
ENSELUG00000012271	cpsf1	100	86.616	ENSONIG00000007676	cpsf1	100	86.479	Oreochromis_niloticus
ENSELUG00000012271	cpsf1	62	77.857	ENSOANG00000010716	CPSF1	88	77.857	Ornithorhynchus_anatinus
ENSELUG00000012271	cpsf1	100	84.362	ENSORLG00000013544	cpsf1	100	84.377	Oryzias_latipes
ENSELUG00000012271	cpsf1	100	84.362	ENSORLG00020021693	cpsf1	100	84.444	Oryzias_latipes_hni
ENSELUG00000012271	cpsf1	100	84.306	ENSORLG00015009979	cpsf1	100	84.522	Oryzias_latipes_hsok
ENSELUG00000012271	cpsf1	100	84.362	ENSOMEG00000011849	cpsf1	100	84.253	Oryzias_melastigma
ENSELUG00000012271	cpsf1	100	79.041	ENSOGAG00000000315	CPSF1	100	78.767	Otolemur_garnettii
ENSELUG00000012271	cpsf1	100	78.767	ENSPPAG00000019280	CPSF1	100	81.364	Pan_paniscus
ENSELUG00000012271	cpsf1	100	78.767	ENSPTRG00000049288	-	100	81.364	Pan_troglodytes
ENSELUG00000012271	cpsf1	100	77.441	ENSPTRG00000051253	-	100	81.364	Pan_troglodytes
ENSELUG00000012271	cpsf1	100	78.602	ENSPANG00000015005	CPSF1	100	79.630	Papio_anubis
ENSELUG00000012271	cpsf1	100	85.969	ENSPKIG00000002582	cpsf1	100	86.037	Paramormyrops_kingsleyae
ENSELUG00000012271	cpsf1	100	78.872	ENSPCIG00000009035	CPSF1	100	78.800	Phascolarctos_cinereus
ENSELUG00000012271	cpsf1	100	83.946	ENSPFOG00000012870	cpsf1	100	84.140	Poecilia_formosa
ENSELUG00000012271	cpsf1	100	84.397	ENSPREG00000016307	cpsf1	100	84.341	Poecilia_reticulata
ENSELUG00000012271	cpsf1	100	71.233	ENSPPYG00000018973	CPSF1	100	71.096	Pongo_abelii
ENSELUG00000012271	cpsf1	94	85.227	ENSPCAG00000011541	CPSF1	94	85.227	Procavia_capensis
ENSELUG00000012271	cpsf1	100	75.565	ENSPCOG00000020001	CPSF1	100	79.630	Propithecus_coquereli
ENSELUG00000012271	cpsf1	91	88.000	ENSPVAG00000006761	CPSF1	91	88.000	Pteropus_vampyrus
ENSELUG00000012271	cpsf1	100	86.239	ENSPNYG00000004906	cpsf1	100	86.568	Pundamilia_nyererei
ENSELUG00000012271	cpsf1	100	81.943	ENSPNAG00000024395	cpsf1	100	81.172	Pygocentrus_nattereri
ENSELUG00000012271	cpsf1	100	78.204	ENSRNOG00000030705	Cpsf1	100	77.862	Rattus_norvegicus
ENSELUG00000012271	cpsf1	100	78.630	ENSRBIG00000044907	CPSF1	100	80.093	Rhinopithecus_bieti
ENSELUG00000012271	cpsf1	100	78.699	ENSRROG00000044861	CPSF1	100	80.093	Rhinopithecus_roxellana
ENSELUG00000012271	cpsf1	100	78.459	ENSSBOG00000027177	CPSF1	99	78.723	Saimiri_boliviensis_boliviensis
ENSELUG00000012271	cpsf1	100	78.944	ENSSHAG00000006500	CPSF1	100	78.596	Sarcophilus_harrisii
ENSELUG00000012271	cpsf1	100	86.519	ENSSFOG00015004606	cpsf1	100	86.003	Scleropages_formosus
ENSELUG00000012271	cpsf1	100	85.907	ENSSMAG00000020547	cpsf1	100	86.734	Scophthalmus_maximus
ENSELUG00000012271	cpsf1	100	86.929	ENSSDUG00000001100	cpsf1	100	86.791	Seriola_dumerili
ENSELUG00000012271	cpsf1	100	86.878	ENSSLDG00000003619	cpsf1	100	86.740	Seriola_lalandi_dorsalis
ENSELUG00000012271	cpsf1	91	74.510	ENSSARG00000003643	CPSF1	92	74.980	Sorex_araneus
ENSELUG00000012271	cpsf1	100	79.971	ENSSPUG00000014396	CPSF1	99	80.342	Sphenodon_punctatus
ENSELUG00000012271	cpsf1	100	86.870	ENSSPAG00000005349	cpsf1	100	87.088	Stegastes_partitus
ENSELUG00000012271	cpsf1	100	77.944	ENSSSCG00000005906	CPSF1	100	77.839	Sus_scrofa
ENSELUG00000012271	cpsf1	100	84.664	ENSTRUG00000013134	cpsf1	99	83.889	Takifugu_rubripes
ENSELUG00000012271	cpsf1	100	84.196	ENSTNIG00000014027	cpsf1	100	84.129	Tetraodon_nigroviridis
ENSELUG00000012271	cpsf1	77	76.604	ENSTBEG00000001756	CPSF1	91	73.057	Tupaia_belangeri
ENSELUG00000012271	cpsf1	89	83.705	ENSTTRG00000001937	CPSF1	90	83.705	Tursiops_truncatus
ENSELUG00000012271	cpsf1	100	78.729	ENSUAMG00000006476	CPSF1	98	78.966	Ursus_americanus
ENSELUG00000012271	cpsf1	100	84.080	ENSXCOG00000003608	cpsf1	100	84.011	Xiphophorus_couchianus
ENSELUG00000012271	cpsf1	100	83.702	ENSXMAG00000005798	cpsf1	100	83.702	Xiphophorus_maculatus