EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000012309 (Gene tree)
Gene ID: -
Gene Symbol: chd6
Alias: si:dkey-6e2.3|zmp:0000000556
Full Name: chromodomain-helicase-DNA-binding protein 6
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 80848 bases
Position: chrAZJR03001011.1:11347-92194
Accession: 105006450
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000033878	ResIII	PF04851.15	1.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000020120	-	1503	-	ENSELUP00000011952	500 (aa)	-	-
ENSELUT00000020308	-	6192	XM_010864998	ENSELUP00000033878	2063 (aa)	XP_010863300	-

Gene Model

Click here to download ENSELUG00000012309's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000012309's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000012309	chd6	85	66.942	ENSELUG00000006031	chd9	71	66.942
ENSELUG00000012309	chd6	63	60.793	ENSELUG00000004302	chd8	60	56.686
ENSELUG00000012309	chd6	92	65.280	ENSELUG00000024442	chd7	75	65.507

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000012309	chd6	92	79.664	ENSG00000124177	CHD6	99	81.008	Homo_sapiens
ENSELUG00000012309	chd6	94	78.022	ENSAPOG00000013736	chd6	63	78.229	Acanthochromis_polyacanthus
ENSELUG00000012309	chd6	92	79.908	ENSAMEG00000009496	CHD6	65	79.908	Ailuropoda_melanoleuca
ENSELUG00000012309	chd6	94	77.143	ENSATEG00000005608	chd6	62	77.726	Anabas_testudineus
ENSELUG00000012309	chd6	91	79.176	ENSAPLG00000015592	CHD6	76	79.176	Anas_platyrhynchos
ENSELUG00000012309	chd6	90	75.249	ENSACAG00000006842	CHD6	65	75.249	Anolis_carolinensis
ENSELUG00000012309	chd6	92	79.939	ENSANAG00000037548	CHD6	94	85.243	Aotus_nancymaae
ENSELUG00000012309	chd6	94	79.958	ENSAMXG00000009576	chd6	71	80.905	Astyanax_mexicanus
ENSELUG00000012309	chd6	90	79.015	ENSBTAG00000005733	CHD6	65	79.015	Bos_taurus
ENSELUG00000012309	chd6	92	79.939	ENSCJAG00000017920	CHD6	94	85.243	Callithrix_jacchus
ENSELUG00000012309	chd6	92	80.108	ENSCAFG00000009236	CHD6	65	80.108	Canis_familiaris
ENSELUG00000012309	chd6	92	80.605	ENSCAFG00020012906	CHD6	94	84.990	Canis_lupus_dingo
ENSELUG00000012309	chd6	90	79.800	ENSCHIG00000017606	CHD6	70	79.800	Capra_hircus
ENSELUG00000012309	chd6	83	79.899	ENSTSYG00000014635	CHD6	78	79.899	Carlito_syrichta
ENSELUG00000012309	chd6	89	79.374	ENSCPOG00000015641	CHD6	65	79.374	Cavia_porcellus
ENSELUG00000012309	chd6	92	80.092	ENSCCAG00000036828	CHD6	94	85.243	Cebus_capucinus
ENSELUG00000012309	chd6	92	80.077	ENSCATG00000039248	CHD6	94	85.243	Cercocebus_atys
ENSELUG00000012309	chd6	89	79.908	ENSCLAG00000013743	CHD6	70	79.817	Chinchilla_lanigera
ENSELUG00000012309	chd6	92	79.740	ENSCSAG00000013997	CHD6	72	79.740	Chlorocebus_sabaeus
ENSELUG00000012309	chd6	75	76.789	ENSCHOG00000012647	CHD6	62	76.789	Choloepus_hoffmanni
ENSELUG00000012309	chd6	93	80.092	ENSCPBG00000019382	CHD6	73	80.092	Chrysemys_picta_bellii
ENSELUG00000012309	chd6	92	80.139	ENSCANG00000043435	CHD6	94	85.243	Colobus_angolensis_palliatus
ENSELUG00000012309	chd6	88	79.511	ENSCGRG00001002694	Chd6	72	79.511	Cricetulus_griseus_chok1gshd
ENSELUG00000012309	chd6	96	83.123	ENSDARG00000017244	chd6	71	83.123	Danio_rerio
ENSELUG00000012309	chd6	89	79.985	ENSDNOG00000004176	CHD6	70	79.893	Dasypus_novemcinctus
ENSELUG00000012309	chd6	89	80.575	ENSEASG00005023433	CHD6	94	86.355	Equus_asinus_asinus
ENSELUG00000012309	chd6	89	79.664	ENSECAG00000011761	CHD6	70	79.664	Equus_caballus
ENSELUG00000012309	chd6	90	80.108	ENSFCAG00000003572	CHD6	71	80.108	Felis_catus
ENSELUG00000012309	chd6	91	79.416	ENSFALG00000012563	CHD6	71	79.416	Ficedula_albicollis
ENSELUG00000012309	chd6	89	79.817	ENSFDAG00000013791	CHD6	70	79.817	Fukomys_damarensis
ENSELUG00000012309	chd6	84	80.333	ENSGMOG00000011715	chd6	77	80.333	Gadus_morhua
ENSELUG00000012309	chd6	93	76.992	ENSGACG00000000037	chd6	80	77.200	Gasterosteus_aculeatus
ENSELUG00000012309	chd6	92	80.077	ENSGGOG00000013123	CHD6	94	85.243	Gorilla_gorilla
ENSELUG00000012309	chd6	91	81.147	ENSHBUG00000014701	chd6	64	77.918	Haplochromis_burtoni
ENSELUG00000012309	chd6	89	79.740	ENSHGLG00000004548	CHD6	72	79.740	Heterocephalus_glaber_female
ENSELUG00000012309	chd6	89	79.740	ENSHGLG00100006401	CHD6	72	79.740	Heterocephalus_glaber_male
ENSELUG00000012309	chd6	90	88.085	ENSIPUG00000003692	chd6	68	88.085	Ictalurus_punctatus
ENSELUG00000012309	chd6	88	79.893	ENSSTOG00000013382	CHD6	70	79.893	Ictidomys_tridecemlineatus
ENSELUG00000012309	chd6	92	79.520	ENSLACG00000010881	CHD6	72	79.520	Latimeria_chalumnae
ENSELUG00000012309	chd6	86	85.119	ENSLOCG00000007386	chd6	73	85.045	Lepisosteus_oculatus
ENSELUG00000012309	chd6	90	79.848	ENSLAFG00000012144	CHD6	71	79.848	Loxodonta_africana
ENSELUG00000012309	chd6	89	80.139	ENSMFAG00000032830	CHD6	94	85.243	Macaca_fascicularis
ENSELUG00000012309	chd6	89	79.740	ENSMMUG00000020458	CHD6	94	85.243	Macaca_mulatta
ENSELUG00000012309	chd6	89	80.139	ENSMNEG00000040847	CHD6	94	85.243	Macaca_nemestrina
ENSELUG00000012309	chd6	92	80.139	ENSMLEG00000031965	CHD6	94	85.243	Mandrillus_leucophaeus
ENSELUG00000012309	chd6	91	81.322	ENSMAMG00000013111	chd6	65	77.659	Mastacembelus_armatus
ENSELUG00000012309	chd6	91	77.080	ENSMGAG00000001121	CHD6	76	77.080	Meleagris_gallopavo
ENSELUG00000012309	chd6	88	79.740	ENSMICG00000016641	CHD6	94	85.243	Microcebus_murinus
ENSELUG00000012309	chd6	91	80.908	ENSMODG00000000720	-	80	80.908	Monodelphis_domestica
ENSELUG00000012309	chd6	89	79.587	MGP_CAROLIEiJ_G0024604	Chd6	73	87.442	Mus_caroli
ENSELUG00000012309	chd6	89	79.664	ENSMUSG00000057133	Chd6	73	87.558	Mus_musculus
ENSELUG00000012309	chd6	89	79.434	MGP_PahariEiJ_G0026048	Chd6	73	87.326	Mus_pahari
ENSELUG00000012309	chd6	89	79.664	MGP_SPRETEiJ_G0025526	Chd6	73	87.558	Mus_spretus
ENSELUG00000012309	chd6	89	79.740	ENSMPUG00000017695	CHD6	65	79.740	Mustela_putorius_furo
ENSELUG00000012309	chd6	90	78.368	ENSMLUG00000016247	CHD6	66	78.368	Myotis_lucifugus
ENSELUG00000012309	chd6	93	82.451	ENSNBRG00000013839	chd6	70	82.814	Neolamprologus_brichardi
ENSELUG00000012309	chd6	92	78.846	ENSNLEG00000006496	CHD6	72	78.058	Nomascus_leucogenys
ENSELUG00000012309	chd6	88	77.513	ENSOPRG00000013376	-	69	77.513	Ochotona_princeps
ENSELUG00000012309	chd6	91	85.057	ENSONIG00000000393	chd6	74	85.057	Oreochromis_niloticus
ENSELUG00000012309	chd6	91	79.692	ENSOANG00000014347	CHD6	61	79.692	Ornithorhynchus_anatinus
ENSELUG00000012309	chd6	89	79.620	ENSOCUG00000012394	CHD6	72	79.620	Oryctolagus_cuniculus
ENSELUG00000012309	chd6	94	77.100	ENSORLG00020021891	chd6	95	88.200	Oryzias_latipes_hni
ENSELUG00000012309	chd6	89	79.740	ENSOGAG00000002427	CHD6	70	79.740	Otolemur_garnettii
ENSELUG00000012309	chd6	90	78.099	ENSOARG00000002597	CHD6	65	78.099	Ovis_aries
ENSELUG00000012309	chd6	90	80.108	ENSPPRG00000014756	CHD6	71	80.108	Panthera_pardus
ENSELUG00000012309	chd6	90	79.954	ENSPTIG00000011094	CHD6	70	79.954	Panthera_tigris_altaica
ENSELUG00000012309	chd6	92	80.139	ENSPTRG00000013504	CHD6	94	85.243	Pan_troglodytes
ENSELUG00000012309	chd6	92	80.154	ENSPANG00000025554	CHD6	94	85.243	Papio_anubis
ENSELUG00000012309	chd6	94	82.661	ENSPKIG00000005578	chd6	74	82.944	Paramormyrops_kingsleyae
ENSELUG00000012309	chd6	93	80.014	ENSPMGG00000014877	chd6	89	80.014	Periophthalmus_magnuspinnatus
ENSELUG00000012309	chd6	91	80.600	ENSPCIG00000028037	CHD6	71	80.600	Phascolarctos_cinereus
ENSELUG00000012309	chd6	93	89.495	ENSPLAG00000003128	chd6	64	89.495	Poecilia_latipinna
ENSELUG00000012309	chd6	93	89.395	ENSPREG00000022653	chd6	99	87.912	Poecilia_reticulata
ENSELUG00000012309	chd6	92	79.740	ENSPPYG00000011016	CHD6	72	79.740	Pongo_abelii
ENSELUG00000012309	chd6	88	79.587	ENSPCOG00000001089	CHD6	94	85.049	Propithecus_coquereli
ENSELUG00000012309	chd6	94	81.715	ENSPNYG00000022516	chd6	69	82.069	Pundamilia_nyererei
ENSELUG00000012309	chd6	93	83.392	ENSPNAG00000012825	chd6	73	83.392	Pygocentrus_nattereri
ENSELUG00000012309	chd6	88	79.692	ENSRNOG00000016744	Chd6	70	79.692	Rattus_norvegicus
ENSELUG00000012309	chd6	92	80.092	ENSSBOG00000022089	CHD6	94	85.243	Saimiri_boliviensis_boliviensis
ENSELUG00000012309	chd6	92	80.536	ENSSHAG00000017072	CHD6	72	80.352	Sarcophilus_harrisii
ENSELUG00000012309	chd6	94	84.516	ENSSFOG00015012920	chd6	74	84.516	Scleropages_formosus
ENSELUG00000012309	chd6	90	80.415	ENSSSCG00000007360	CHD6	69	80.415	Sus_scrofa
ENSELUG00000012309	chd6	92	79.240	ENSTGUG00000003179	CHD6	75	79.240	Taeniopygia_guttata
ENSELUG00000012309	chd6	93	76.892	ENSTNIG00000017487	chd6	79	77.133	Tetraodon_nigroviridis
ENSELUG00000012309	chd6	86	81.623	ENSTTRG00000013438	CHD6	69	81.623	Tursiops_truncatus
ENSELUG00000012309	chd6	92	78.615	ENSUAMG00000024036	CHD6	94	84.990	Ursus_americanus
ENSELUG00000012309	chd6	92	80.730	ENSUMAG00000002017	CHD6	94	84.990	Ursus_maritimus
ENSELUG00000012309	chd6	91	67.019	ENSVPAG00000007941	CHD6	71	67.019	Vicugna_pacos
ENSELUG00000012309	chd6	92	80.108	ENSVVUG00000029164	CHD6	65	80.108	Vulpes_vulpes
ENSELUG00000012309	chd6	92	70.808	ENSXETG00000021445	chd6	72	70.808	Xenopus_tropicalis