EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000012585 (Gene tree)
Gene ID: 105019277
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 22157 bases
Position: chrLG20:11440746-11462902
Accession: 105019277
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000012333	EST1	PF10374.9	3.5e-24	1	1
ENSELUP00000034091	EST1	PF10374.9	1.1e-23	1	1
ENSELUP00000012311	EST1	PF10374.9	2e-20	1	1
ENSELUP00000012333	EST1_DNA_bind	PF10373.9	3.3e-39	1	1
ENSELUP00000034091	EST1_DNA_bind	PF10373.9	7.2e-39	1	1
ENSELUP00000012311	EST1_DNA_bind	PF10373.9	8.2e-34	1	1
ENSELUP00000012311	PIN_4	PF13638.6	2.2e-05	1	1
ENSELUP00000034091	PIN_4	PF13638.6	2.2e-05	1	1
ENSELUP00000012333	PIN_4	PF13638.6	2.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000020522	-	3036	-	ENSELUP00000034091	1011 (aa)	-	-
ENSELUT00000020565	-	6213	XM_010885336	ENSELUP00000012311	1084 (aa)	XP_010883638	-
ENSELUT00000020599	-	6303	XM_010885334	ENSELUP00000012333	1114 (aa)	XP_010883636	UPI0005763BF0

Gene Model

Click here to download ENSELUG00000012585's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000012585's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000012585	smg5	99	65.159	ENSG00000198952	SMG5	99	65.255	Homo_sapiens
ENSELUG00000012585	smg5	100	81.521	ENSAPOG00000019690	smg5	100	82.643	Acanthochromis_polyacanthus
ENSELUG00000012585	smg5	98	64.596	ENSAMEG00000014458	SMG5	100	64.166	Ailuropoda_melanoleuca
ENSELUG00000012585	smg5	99	81.783	ENSACIG00000001353	smg5	99	81.625	Amphilophus_citrinellus
ENSELUG00000012585	smg5	100	81.915	ENSAOCG00000019483	smg5	100	83.024	Amphiprion_ocellaris
ENSELUG00000012585	smg5	100	82.004	ENSAPEG00000022949	smg5	100	82.817	Amphiprion_percula
ENSELUG00000012585	smg5	100	80.817	ENSATEG00000005348	smg5	100	81.738	Anabas_testudineus
ENSELUG00000012585	smg5	98	66.828	ENSAPLG00000010263	SMG5	100	66.537	Anas_platyrhynchos
ENSELUG00000012585	smg5	99	64.790	ENSANAG00000032899	SMG5	99	65.063	Aotus_nancymaae
ENSELUG00000012585	smg5	100	80.531	ENSACLG00000009311	smg5	99	81.924	Astatotilapia_calliptera
ENSELUG00000012585	smg5	100	80.610	ENSAMXG00000024616	smg5	100	81.071	Astyanax_mexicanus
ENSELUG00000012585	smg5	99	65.537	ENSBTAG00000009435	SMG5	99	65.537	Bos_taurus
ENSELUG00000012585	smg5	99	39.058	ENSBTAG00000021747	-	93	49.880	Bos_taurus
ENSELUG00000012585	smg5	99	64.790	ENSCJAG00000005684	SMG5	99	65.063	Callithrix_jacchus
ENSELUG00000012585	smg5	99	65.370	ENSCAFG00000016839	SMG5	99	65.370	Canis_familiaris
ENSELUG00000012585	smg5	99	65.370	ENSCAFG00020006061	SMG5	99	65.370	Canis_lupus_dingo
ENSELUG00000012585	smg5	99	65.507	ENSCHIG00000007709	SMG5	99	65.217	Capra_hircus
ENSELUG00000012585	smg5	99	38.988	ENSCHIG00000006323	-	94	50.245	Capra_hircus
ENSELUG00000012585	smg5	99	65.643	ENSTSYG00000004099	SMG5	99	65.734	Carlito_syrichta
ENSELUG00000012585	smg5	95	49.797	ENSCAPG00000003631	SMG5	100	50.918	Cavia_aperea
ENSELUG00000012585	smg5	99	65.024	ENSCPOG00000015696	SMG5	99	65.604	Cavia_porcellus
ENSELUG00000012585	smg5	99	65.072	ENSCCAG00000027409	SMG5	99	65.444	Cebus_capucinus
ENSELUG00000012585	smg5	99	65.063	ENSCATG00000030539	SMG5	99	65.159	Cercocebus_atys
ENSELUG00000012585	smg5	99	64.870	ENSCLAG00000003983	SMG5	99	65.351	Chinchilla_lanigera
ENSELUG00000012585	smg5	99	65.063	ENSCSAG00000002120	SMG5	99	65.159	Chlorocebus_sabaeus
ENSELUG00000012585	smg5	54	75.812	ENSCHOG00000008741	-	57	75.812	Choloepus_hoffmanni
ENSELUG00000012585	smg5	93	65.086	ENSCPBG00000025848	SMG5	100	65.524	Chrysemys_picta_bellii
ENSELUG00000012585	smg5	93	32.819	ENSCING00000008706	-	93	38.847	Ciona_intestinalis
ENSELUG00000012585	smg5	99	62.860	ENSCANG00000029208	SMG5	99	62.668	Colobus_angolensis_palliatus
ENSELUG00000012585	smg5	99	64.638	ENSCGRG00001006336	Smg5	99	65.024	Cricetulus_griseus_chok1gshd
ENSELUG00000012585	smg5	98	64.503	ENSCGRG00000005111	Smg5	100	64.862	Cricetulus_griseus_crigri
ENSELUG00000012585	smg5	100	78.938	ENSCSEG00000014220	smg5	100	79.505	Cynoglossus_semilaevis
ENSELUG00000012585	smg5	99	73.977	ENSCVAG00000000529	smg5	99	74.074	Cyprinodon_variegatus
ENSELUG00000012585	smg5	100	77.956	ENSDARG00000041481	smg5	94	90.931	Danio_rerio
ENSELUG00000012585	smg5	92	31.316	ENSDNOG00000039862	-	99	38.624	Dasypus_novemcinctus
ENSELUG00000012585	smg5	99	61.813	ENSDNOG00000000051	SMG5	99	62.006	Dasypus_novemcinctus
ENSELUG00000012585	smg5	99	65.700	ENSDORG00000010382	Smg5	99	65.448	Dipodomys_ordii
ENSELUG00000012585	smg5	66	31.973	FBgn0019890	Smg5	63	33.544	Drosophila_melanogaster
ENSELUG00000012585	smg5	75	82.692	ENSETEG00000010336	SMG5	82	82.692	Echinops_telfairi
ENSELUG00000012585	smg5	91	44.596	ENSEBUG00000003739	smg5	99	45.073	Eptatretus_burgeri
ENSELUG00000012585	smg5	99	65.990	ENSEASG00005019122	SMG5	99	65.990	Equus_asinus_asinus
ENSELUG00000012585	smg5	99	66.087	ENSECAG00000001389	SMG5	99	65.990	Equus_caballus
ENSELUG00000012585	smg5	73	79.772	ENSEEUG00000012690	SMG5	75	79.487	Erinaceus_europaeus
ENSELUG00000012585	smg5	99	64.995	ENSFCAG00000011783	SMG5	99	65.403	Felis_catus
ENSELUG00000012585	smg5	56	70.628	ENSFALG00000001166	-	95	69.440	Ficedula_albicollis
ENSELUG00000012585	smg5	98	64.828	ENSFDAG00000017388	SMG5	100	64.637	Fukomys_damarensis
ENSELUG00000012585	smg5	86	86.076	ENSFHEG00000013939	smg5	95	86.076	Fundulus_heteroclitus
ENSELUG00000012585	smg5	100	77.111	ENSGMOG00000007310	smg5	100	77.836	Gadus_morhua
ENSELUG00000012585	smg5	99	66.731	ENSGALG00000029918	-	99	66.127	Gallus_gallus
ENSELUG00000012585	smg5	93	85.350	ENSGAFG00000021691	smg5	99	85.350	Gambusia_affinis
ENSELUG00000012585	smg5	100	78.742	ENSGACG00000013142	smg5	100	79.329	Gasterosteus_aculeatus
ENSELUG00000012585	smg5	99	66.572	ENSGAGG00000016131	SMG5	99	66.382	Gopherus_agassizii
ENSELUG00000012585	smg5	99	65.063	ENSGGOG00000010932	SMG5	99	65.159	Gorilla_gorilla
ENSELUG00000012585	smg5	99	81.123	ENSHBUG00000008654	smg5	99	82.091	Haplochromis_burtoni
ENSELUG00000012585	smg5	99	64.649	ENSHGLG00000019152	SMG5	99	64.774	Heterocephalus_glaber_female
ENSELUG00000012585	smg5	90	65.032	ENSHGLG00100015948	SMG5	99	65.171	Heterocephalus_glaber_male
ENSELUG00000012585	smg5	91	83.212	ENSHCOG00000010229	smg5	97	83.212	Hippocampus_comes
ENSELUG00000012585	smg5	100	77.385	ENSIPUG00000006624	Smg5	100	78.122	Ictalurus_punctatus
ENSELUG00000012585	smg5	99	66.216	ENSSTOG00000001780	SMG5	99	66.120	Ictidomys_tridecemlineatus
ENSELUG00000012585	smg5	99	64.464	ENSJJAG00000022763	Smg5	99	64.655	Jaculus_jaculus
ENSELUG00000012585	smg5	100	81.134	ENSKMAG00000014586	smg5	100	81.770	Kryptolebias_marmoratus
ENSELUG00000012585	smg5	100	81.045	ENSLBEG00000002145	smg5	100	81.899	Labrus_bergylta
ENSELUG00000012585	smg5	99	59.411	ENSLACG00000010521	SMG5	99	60.494	Latimeria_chalumnae
ENSELUG00000012585	smg5	94	86.588	ENSLOCG00000008380	smg5	99	74.129	Lepisosteus_oculatus
ENSELUG00000012585	smg5	99	65.567	ENSLAFG00000006241	SMG5	99	65.664	Loxodonta_africana
ENSELUG00000012585	smg5	99	65.063	ENSMFAG00000045357	SMG5	99	65.159	Macaca_fascicularis
ENSELUG00000012585	smg5	93	79.335	ENSMMUG00000000090	SMG5	99	65.823	Macaca_mulatta
ENSELUG00000012585	smg5	99	64.966	ENSMNEG00000044425	SMG5	99	65.063	Macaca_nemestrina
ENSELUG00000012585	smg5	99	59.827	ENSMLEG00000041192	SMG5	99	59.923	Mandrillus_leucophaeus
ENSELUG00000012585	smg5	100	80.354	ENSMAMG00000010683	smg5	100	81.521	Mastacembelus_armatus
ENSELUG00000012585	smg5	68	68.385	ENSMZEG00005016543	smg5	100	73.692	Maylandia_zebra
ENSELUG00000012585	smg5	99	77.027	ENSMZEG00005015815	smg5	99	77.101	Maylandia_zebra
ENSELUG00000012585	smg5	55	41.289	ENSMAUG00000000043	-	96	42.446	Mesocricetus_auratus
ENSELUG00000012585	smg5	99	65.024	ENSMAUG00000010381	Smg5	99	65.507	Mesocricetus_auratus
ENSELUG00000012585	smg5	99	65.537	ENSMICG00000002257	SMG5	99	65.092	Microcebus_murinus
ENSELUG00000012585	smg5	99	64.706	ENSMOCG00000016590	Smg5	99	64.899	Microtus_ochrogaster
ENSELUG00000012585	smg5	51	44.186	ENSMOCG00000008423	-	88	42.407	Microtus_ochrogaster
ENSELUG00000012585	smg5	100	78.199	ENSMMOG00000017199	smg5	100	78.483	Mola_mola
ENSELUG00000012585	smg5	79	32.857	ENSMODG00000010675	-	89	34.223	Monodelphis_domestica
ENSELUG00000012585	smg5	97	30.739	ENSMODG00000004511	-	81	34.793	Monodelphis_domestica
ENSELUG00000012585	smg5	75	34.501	ENSMODG00000004735	-	86	34.501	Monodelphis_domestica
ENSELUG00000012585	smg5	87	65.347	ENSMODG00000016901	SMG5	98	65.897	Monodelphis_domestica
ENSELUG00000012585	smg5	73	44.242	ENSMODG00000004532	-	90	34.499	Monodelphis_domestica
ENSELUG00000012585	smg5	100	79.152	ENSMALG00000010375	smg5	100	79.453	Monopterus_albus
ENSELUG00000012585	smg5	99	65.024	MGP_CAROLIEiJ_G0025163	Smg5	100	87.709	Mus_caroli
ENSELUG00000012585	smg5	99	65.024	ENSMUSG00000001415	Smg5	99	87.709	Mus_musculus
ENSELUG00000012585	smg5	99	64.995	MGP_PahariEiJ_G0026606	Smg5	100	88.268	Mus_pahari
ENSELUG00000012585	smg5	99	64.928	MGP_SPRETEiJ_G0026104	Smg5	100	87.709	Mus_spretus
ENSELUG00000012585	smg5	93	64.663	ENSMPUG00000004546	SMG5	100	64.249	Mustela_putorius_furo
ENSELUG00000012585	smg5	99	64.286	ENSMLUG00000008518	SMG5	99	65.541	Myotis_lucifugus
ENSELUG00000012585	smg5	79	49.628	ENSNGAG00000012101	-	93	49.132	Nannospalax_galili
ENSELUG00000012585	smg5	99	64.928	ENSNGAG00000020706	Smg5	99	65.314	Nannospalax_galili
ENSELUG00000012585	smg5	97	76.100	ENSNBRG00000004332	smg5	98	76.700	Neolamprologus_brichardi
ENSELUG00000012585	smg5	99	65.159	ENSNLEG00000012439	SMG5	99	65.255	Nomascus_leucogenys
ENSELUG00000012585	smg5	99	64.451	ENSMEUG00000012834	SMG5	99	65.029	Notamacropus_eugenii
ENSELUG00000012585	smg5	99	65.604	ENSOPRG00000009152	SMG5	99	65.507	Ochotona_princeps
ENSELUG00000012585	smg5	99	65.990	ENSODEG00000012237	SMG5	99	66.087	Octodon_degus
ENSELUG00000012585	smg5	100	79.841	ENSONIG00000008632	smg5	100	80.902	Oreochromis_niloticus
ENSELUG00000012585	smg5	98	65.059	ENSOCUG00000012886	SMG5	100	65.157	Oryctolagus_cuniculus
ENSELUG00000012585	smg5	89	35.185	ENSOCUG00000023338	-	92	44.975	Oryctolagus_cuniculus
ENSELUG00000012585	smg5	100	78.616	ENSORLG00000016239	smg5	100	80.107	Oryzias_latipes
ENSELUG00000012585	smg5	100	79.059	ENSORLG00020013127	smg5	100	80.622	Oryzias_latipes_hni
ENSELUG00000012585	smg5	100	78.793	ENSORLG00015019014	smg5	100	80.267	Oryzias_latipes_hsok
ENSELUG00000012585	smg5	84	79.025	ENSOMEG00000021330	smg5	93	83.251	Oryzias_melastigma
ENSELUG00000012585	smg5	99	65.019	ENSOGAG00000004966	SMG5	99	65.116	Otolemur_garnettii
ENSELUG00000012585	smg5	99	39.293	ENSOARG00000011963	-	94	50.478	Ovis_aries
ENSELUG00000012585	smg5	99	65.507	ENSOARG00000005778	SMG5	99	65.217	Ovis_aries
ENSELUG00000012585	smg5	99	65.159	ENSPPAG00000011996	SMG5	99	65.255	Pan_paniscus
ENSELUG00000012585	smg5	98	64.538	ENSPPRG00000011901	SMG5	100	65.050	Panthera_pardus
ENSELUG00000012585	smg5	97	61.546	ENSPTIG00000007892	SMG5	98	61.345	Panthera_tigris_altaica
ENSELUG00000012585	smg5	87	79.261	ENSPTRG00000049282	-	88	78.977	Pan_troglodytes
ENSELUG00000012585	smg5	99	65.159	ENSPTRG00000023925	SMG5	99	65.255	Pan_troglodytes
ENSELUG00000012585	smg5	99	65.063	ENSPANG00000011201	SMG5	99	65.159	Papio_anubis
ENSELUG00000012585	smg5	100	79.501	ENSPKIG00000009402	smg5	100	79.661	Paramormyrops_kingsleyae
ENSELUG00000012585	smg5	98	66.113	ENSPSIG00000015198	SMG5	100	66.341	Pelodiscus_sinensis
ENSELUG00000012585	smg5	100	71.786	ENSPMGG00000010465	smg5	100	71.786	Periophthalmus_magnuspinnatus
ENSELUG00000012585	smg5	99	64.831	ENSPEMG00000001819	Smg5	99	65.411	Peromyscus_maniculatus_bairdii
ENSELUG00000012585	smg5	57	41.552	ENSPEMG00000010022	-	68	50.125	Peromyscus_maniculatus_bairdii
ENSELUG00000012585	smg5	85	63.119	ENSPMAG00000000410	smg5	99	49.238	Petromyzon_marinus
ENSELUG00000012585	smg5	99	64.860	ENSPCIG00000018938	SMG5	99	65.247	Phascolarctos_cinereus
ENSELUG00000012585	smg5	100	79.101	ENSPFOG00000010191	smg5	100	80.460	Poecilia_formosa
ENSELUG00000012585	smg5	100	78.426	ENSPLAG00000009332	smg5	100	80.548	Poecilia_latipinna
ENSELUG00000012585	smg5	99	80.424	ENSPMEG00000014105	smg5	100	80.371	Poecilia_mexicana
ENSELUG00000012585	smg5	100	78.919	ENSPREG00000017713	smg5	100	80.142	Poecilia_reticulata
ENSELUG00000012585	smg5	99	65.159	ENSPPYG00000000723	SMG5	99	65.255	Pongo_abelii
ENSELUG00000012585	smg5	77	78.453	ENSPCAG00000008412	SMG5	81	78.453	Procavia_capensis
ENSELUG00000012585	smg5	99	65.634	ENSPCOG00000004741	SMG5	99	65.284	Propithecus_coquereli
ENSELUG00000012585	smg5	99	59.016	ENSPVAG00000016748	SMG5	99	59.306	Pteropus_vampyrus
ENSELUG00000012585	smg5	100	80.159	ENSPNYG00000013397	smg5	100	81.003	Pundamilia_nyererei
ENSELUG00000012585	smg5	100	79.464	ENSPNAG00000028363	smg5	100	80.464	Pygocentrus_nattereri
ENSELUG00000012585	smg5	99	64.831	ENSRNOG00000019590	Smg5	99	64.966	Rattus_norvegicus
ENSELUG00000012585	smg5	99	65.063	ENSRBIG00000027428	SMG5	99	65.159	Rhinopithecus_bieti
ENSELUG00000012585	smg5	99	64.966	ENSRROG00000030035	SMG5	99	65.063	Rhinopithecus_roxellana
ENSELUG00000012585	smg5	99	65.230	ENSSBOG00000033339	SMG5	99	65.604	Saimiri_boliviensis_boliviensis
ENSELUG00000012585	smg5	98	64.579	ENSSHAG00000014163	SMG5	100	64.873	Sarcophilus_harrisii
ENSELUG00000012585	smg5	99	31.707	ENSSHAG00000009572	-	79	41.133	Sarcophilus_harrisii
ENSELUG00000012585	smg5	56	37.500	ENSSHAG00000000935	-	83	37.250	Sarcophilus_harrisii
ENSELUG00000012585	smg5	77	37.750	ENSSHAG00000000561	-	89	37.000	Sarcophilus_harrisii
ENSELUG00000012585	smg5	99	78.952	ENSSFOG00015024175	smg5	99	80.136	Scleropages_formosus
ENSELUG00000012585	smg5	100	81.399	ENSSMAG00000013059	smg5	100	82.935	Scophthalmus_maximus
ENSELUG00000012585	smg5	100	81.057	ENSSDUG00000007122	smg5	100	81.866	Seriola_dumerili
ENSELUG00000012585	smg5	100	80.936	ENSSLDG00000011418	smg5	100	82.509	Seriola_lalandi_dorsalis
ENSELUG00000012585	smg5	79	86.897	ENSSARG00000012484	SMG5	85	86.897	Sorex_araneus
ENSELUG00000012585	smg5	93	64.523	ENSSPUG00000002260	SMG5	100	64.523	Sphenodon_punctatus
ENSELUG00000012585	smg5	100	80.247	ENSSPAG00000014266	smg5	100	81.778	Stegastes_partitus
ENSELUG00000012585	smg5	99	51.265	ENSSSCG00000039308	-	99	51.556	Sus_scrofa
ENSELUG00000012585	smg5	99	65.797	ENSSSCG00000006490	-	100	65.021	Sus_scrofa
ENSELUG00000012585	smg5	99	67.604	ENSTGUG00000003748	-	99	67.085	Taeniopygia_guttata
ENSELUG00000012585	smg5	100	76.393	ENSTRUG00000012580	smg5	100	76.393	Takifugu_rubripes
ENSELUG00000012585	smg5	99	76.341	ENSTNIG00000010303	smg5	100	75.505	Tetraodon_nigroviridis
ENSELUG00000012585	smg5	58	84.236	ENSTBEG00000002777	SMG5	58	84.236	Tupaia_belangeri
ENSELUG00000012585	smg5	99	61.598	ENSTTRG00000001401	SMG5	99	61.175	Tursiops_truncatus
ENSELUG00000012585	smg5	99	64.844	ENSUAMG00000013721	SMG5	99	64.844	Ursus_americanus
ENSELUG00000012585	smg5	91	76.617	ENSUMAG00000018041	SMG5	99	61.243	Ursus_maritimus
ENSELUG00000012585	smg5	93	70.443	ENSVPAG00000009446	SMG5	99	57.325	Vicugna_pacos
ENSELUG00000012585	smg5	99	65.272	ENSVVUG00000005887	SMG5	99	65.370	Vulpes_vulpes
ENSELUG00000012585	smg5	81	53.950	ENSXETG00000033791	SMG5	99	56.597	Xenopus_tropicalis
ENSELUG00000012585	smg5	92	88.710	ENSXCOG00000004379	smg5	100	88.710	Xiphophorus_couchianus
ENSELUG00000012585	smg5	100	78.034	ENSXMAG00000013499	smg5	100	79.663	Xiphophorus_maculatus