EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000012608 (Gene tree)
Gene ID: 105025587
Gene Symbol: gatc
Alias: GATCL
Full Name: glutamyl-tRNA amidotransferase subunit C
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 5705 bases
Position: chrLG13:17625872-17631576
Accession: 105025587
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000012325	Glu-tRNAGln	PF02686.15	1.6e-07	1	1
ENSELUP00000012341	Glu-tRNAGln	PF02686.15	3.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000020625	-	818	XM_010896363	ENSELUP00000012341	189 (aa)	XP_010894665	UPI000661ED2A
ENSELUT00000038048	-	414	-	ENSELUP00000012325	137 (aa)	-	-

Gene Model

Click here to download ENSELUG00000012608's gene model file

Pathways

Pathway ID	Pathway Name	Source
els00970	Aminoacyl-tRNA biosynthesis	KEGG
els01100	Metabolic pathways	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000012608's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000012608	gatc	74	60.396	ENSG00000257218	GATC	100	72.340	Homo_sapiens
ENSELUG00000012608	gatc	74	59.406	ENSAMEG00000013298	-	87	51.639	Ailuropoda_melanoleuca
ENSELUG00000012608	gatc	85	67.521	ENSACIG00000016853	gatc	76	70.000	Amphilophus_citrinellus
ENSELUG00000012608	gatc	75	79.612	ENSAOCG00000014641	gatc	92	74.790	Amphiprion_ocellaris
ENSELUG00000012608	gatc	75	79.612	ENSAPEG00000023411	gatc	65	71.756	Amphiprion_percula
ENSELUG00000012608	gatc	66	80.220	ENSATEG00000009237	gatc	75	80.220	Anabas_testudineus
ENSELUG00000012608	gatc	80	63.636	ENSACAG00000002868	-	81	63.636	Anolis_carolinensis
ENSELUG00000012608	gatc	74	61.386	ENSANAG00000034389	-	74	61.386	Aotus_nancymaae
ENSELUG00000012608	gatc	97	61.224	ENSACLG00000026251	gatc	66	73.846	Astatotilapia_calliptera
ENSELUG00000012608	gatc	75	81.553	ENSAMXG00000004252	gatc	62	66.667	Astyanax_mexicanus
ENSELUG00000012608	gatc	68	61.290	ENSBTAG00000012791	GATC	68	61.290	Bos_taurus
ENSELUG00000012608	gatc	74	35.644	WBGene00013433	Y66D12A.7	70	32.540	Caenorhabditis_elegans
ENSELUG00000012608	gatc	74	61.386	ENSCJAG00000001183	-	95	42.708	Callithrix_jacchus
ENSELUG00000012608	gatc	72	61.616	ENSCAFG00000010311	-	73	61.616	Canis_familiaris
ENSELUG00000012608	gatc	72	61.616	ENSCAFG00020020606	-	73	61.616	Canis_lupus_dingo
ENSELUG00000012608	gatc	72	58.586	ENSCHIG00000019423	-	73	58.586	Capra_hircus
ENSELUG00000012608	gatc	72	59.596	ENSTSYG00000006845	-	90	47.183	Carlito_syrichta
ENSELUG00000012608	gatc	65	61.798	ENSCPOG00000026436	-	61	61.798	Cavia_porcellus
ENSELUG00000012608	gatc	74	61.386	ENSCCAG00000022235	-	91	50.350	Cebus_capucinus
ENSELUG00000012608	gatc	74	60.396	ENSCATG00000038807	GATC	91	48.252	Cercocebus_atys
ENSELUG00000012608	gatc	69	60.000	ENSCLAG00000011015	-	60	60.000	Chinchilla_lanigera
ENSELUG00000012608	gatc	74	61.386	ENSCSAG00000002259	GATC	91	48.951	Chlorocebus_sabaeus
ENSELUG00000012608	gatc	72	61.616	ENSCHOG00000009235	-	73	61.616	Choloepus_hoffmanni
ENSELUG00000012608	gatc	95	49.677	ENSCPBG00000011342	-	83	49.677	Chrysemys_picta_bellii
ENSELUG00000012608	gatc	74	60.396	ENSCANG00000031071	GATC	74	60.396	Colobus_angolensis_palliatus
ENSELUG00000012608	gatc	71	57.732	ENSCGRG00001005508	-	60	50.781	Cricetulus_griseus_chok1gshd
ENSELUG00000012608	gatc	79	56.140	ENSCGRG00001019220	-	90	46.405	Cricetulus_griseus_chok1gshd
ENSELUG00000012608	gatc	79	56.140	ENSCGRG00000004184	-	90	46.405	Cricetulus_griseus_crigri
ENSELUG00000012608	gatc	71	56.701	ENSCGRG00000019471	GATC	60	50.000	Cricetulus_griseus_crigri
ENSELUG00000012608	gatc	79	69.444	ENSCSEG00000016618	-	63	69.444	Cynoglossus_semilaevis
ENSELUG00000012608	gatc	77	78.095	ENSCSEG00000007798	gatc	66	67.407	Cynoglossus_semilaevis
ENSELUG00000012608	gatc	96	67.164	ENSCVAG00000004364	gatc	76	66.443	Cyprinodon_variegatus
ENSELUG00000012608	gatc	91	61.029	ENSDARG00000056855	gatc	66	69.600	Danio_rerio
ENSELUG00000012608	gatc	72	60.606	ENSDNOG00000012593	-	70	51.220	Dasypus_novemcinctus
ENSELUG00000012608	gatc	77	44.545	FBgn0064115	GatC	96	36.424	Drosophila_melanogaster
ENSELUG00000012608	gatc	66	54.945	ENSETEG00000002604	-	67	54.945	Echinops_telfairi
ENSELUG00000012608	gatc	65	47.191	ENSEBUG00000008772	gatc	51	47.191	Eptatretus_burgeri
ENSELUG00000012608	gatc	74	60.396	ENSECAG00000011118	-	74	60.396	Equus_caballus
ENSELUG00000012608	gatc	72	57.576	ENSEEUG00000011638	-	73	57.576	Erinaceus_europaeus
ENSELUG00000012608	gatc	74	60.396	ENSFCAG00000038718	-	74	60.396	Felis_catus
ENSELUG00000012608	gatc	91	53.906	ENSFALG00000007564	-	84	53.906	Ficedula_albicollis
ENSELUG00000012608	gatc	80	58.182	ENSFDAG00000018720	-	79	58.182	Fukomys_damarensis
ENSELUG00000012608	gatc	75	76.699	ENSFHEG00000014992	GATC	75	65.517	Fundulus_heteroclitus
ENSELUG00000012608	gatc	72	73.737	ENSGMOG00000008742	gatc	78	64.885	Gadus_morhua
ENSELUG00000012608	gatc	94	50.388	ENSGALG00000007195	-	91	51.163	Gallus_gallus
ENSELUG00000012608	gatc	73	74.000	ENSGAFG00000012801	gatc	74	69.421	Gambusia_affinis
ENSELUG00000012608	gatc	75	78.641	ENSGACG00000008973	gatc	65	70.000	Gasterosteus_aculeatus
ENSELUG00000012608	gatc	90	59.350	ENSGAGG00000016018	-	80	53.333	Gopherus_agassizii
ENSELUG00000012608	gatc	68	60.215	ENSGGOG00000026821	GATC	90	47.407	Gorilla_gorilla
ENSELUG00000012608	gatc	97	61.905	ENSHBUG00000006827	gatc	66	73.846	Haplochromis_burtoni
ENSELUG00000012608	gatc	80	58.182	ENSHGLG00000011394	GATC	79	58.182	Heterocephalus_glaber_female
ENSELUG00000012608	gatc	80	56.364	ENSHGLG00100018850	-	79	56.364	Heterocephalus_glaber_male
ENSELUG00000012608	gatc	75	74.757	ENSHCOG00000009209	gatc	92	70.492	Hippocampus_comes
ENSELUG00000012608	gatc	94	65.116	ENSIPUG00000023072	gatc	64	65.116	Ictalurus_punctatus
ENSELUG00000012608	gatc	71	62.887	ENSSTOG00000025740	-	63	62.887	Ictidomys_tridecemlineatus
ENSELUG00000012608	gatc	78	58.879	ENSJJAG00000000369	Gatc	66	58.879	Jaculus_jaculus
ENSELUG00000012608	gatc	71	75.258	ENSKMAG00000016476	gatc	91	69.106	Kryptolebias_marmoratus
ENSELUG00000012608	gatc	75	77.670	ENSLBEG00000007603	gatc	72	67.407	Labrus_bergylta
ENSELUG00000012608	gatc	89	56.557	ENSLACG00000018239	-	65	56.923	Latimeria_chalumnae
ENSELUG00000012608	gatc	75	75.728	ENSLOCG00000004056	gatc	64	69.919	Lepisosteus_oculatus
ENSELUG00000012608	gatc	66	64.444	ENSLAFG00000006384	-	59	64.444	Loxodonta_africana
ENSELUG00000012608	gatc	74	60.396	ENSMFAG00000034197	GATC	91	48.252	Macaca_fascicularis
ENSELUG00000012608	gatc	74	60.396	ENSMMUG00000046665	GATC	91	48.252	Macaca_mulatta
ENSELUG00000012608	gatc	74	60.396	ENSMNEG00000034653	GATC	91	48.252	Macaca_nemestrina
ENSELUG00000012608	gatc	74	61.386	ENSMLEG00000039862	GATC	91	48.951	Mandrillus_leucophaeus
ENSELUG00000012608	gatc	75	76.699	ENSMAMG00000015851	gatc	74	68.841	Mastacembelus_armatus
ENSELUG00000012608	gatc	75	80.583	ENSMZEG00005016072	gatc	66	73.846	Maylandia_zebra
ENSELUG00000012608	gatc	72	62.245	ENSMGAG00000008733	-	92	62.245	Meleagris_gallopavo
ENSELUG00000012608	gatc	79	57.018	ENSMAUG00000012756	Gatc	90	47.712	Mesocricetus_auratus
ENSELUG00000012608	gatc	74	61.386	ENSMICG00000008669	-	91	48.951	Microcebus_murinus
ENSELUG00000012608	gatc	87	57.851	ENSMOCG00000005051	Gatc	90	47.097	Microtus_ochrogaster
ENSELUG00000012608	gatc	74	72.549	ENSMMOG00000017695	gatc	84	72.277	Mola_mola
ENSELUG00000012608	gatc	74	62.745	ENSMODG00000003152	-	77	62.745	Monodelphis_domestica
ENSELUG00000012608	gatc	69	63.158	MGP_CAROLIEiJ_G0027623	Gatc	61	63.158	Mus_caroli
ENSELUG00000012608	gatc	69	63.158	ENSMUSG00000029536	Gatc	61	63.158	Mus_musculus
ENSELUG00000012608	gatc	74	61.538	MGP_PahariEiJ_G0024203	Gatc	67	61.538	Mus_pahari
ENSELUG00000012608	gatc	69	62.105	MGP_SPRETEiJ_G0028621	Gatc	61	62.105	Mus_spretus
ENSELUG00000012608	gatc	74	60.396	ENSMPUG00000003183	-	74	60.396	Mustela_putorius_furo
ENSELUG00000012608	gatc	69	58.511	ENSMLUG00000010341	-	93	58.511	Myotis_lucifugus
ENSELUG00000012608	gatc	68	63.441	ENSNGAG00000004734	Gatc	61	63.441	Nannospalax_galili
ENSELUG00000012608	gatc	75	81.553	ENSNBRG00000007810	gatc	66	73.846	Neolamprologus_brichardi
ENSELUG00000012608	gatc	90	55.285	ENSNLEG00000015651	GATC	83	55.285	Nomascus_leucogenys
ENSELUG00000012608	gatc	76	60.577	ENSMEUG00000004064	-	84	60.577	Notamacropus_eugenii
ENSELUG00000012608	gatc	72	62.626	ENSOPRG00000004226	-	73	62.626	Ochotona_princeps
ENSELUG00000012608	gatc	67	59.783	ENSODEG00000005919	-	67	59.783	Octodon_degus
ENSELUG00000012608	gatc	75	79.048	ENSONIG00000013444	gatc	83	75.610	Oreochromis_niloticus
ENSELUG00000012608	gatc	74	62.376	ENSOCUG00000009867	-	74	62.376	Oryctolagus_cuniculus
ENSELUG00000012608	gatc	82	68.696	ENSORLG00000007156	gatc	92	69.565	Oryzias_latipes
ENSELUG00000012608	gatc	75	73.786	ENSORLG00020014991	gatc	66	65.891	Oryzias_latipes_hni
ENSELUG00000012608	gatc	75	72.816	ENSORLG00015003450	gatc	66	65.116	Oryzias_latipes_hsok
ENSELUG00000012608	gatc	75	72.816	ENSOMEG00000002280	gatc	64	68.293	Oryzias_melastigma
ENSELUG00000012608	gatc	74	58.416	ENSOGAG00000003850	-	93	58.416	Otolemur_garnettii
ENSELUG00000012608	gatc	75	56.481	ENSOARG00000012338	-	84	56.481	Ovis_aries
ENSELUG00000012608	gatc	74	60.396	ENSPPAG00000029164	GATC	91	48.252	Pan_paniscus
ENSELUG00000012608	gatc	74	59.406	ENSPPRG00000000929	-	74	59.406	Panthera_pardus
ENSELUG00000012608	gatc	74	59.406	ENSPTIG00000009889	-	74	59.406	Panthera_tigris_altaica
ENSELUG00000012608	gatc	96	51.515	ENSPTRG00000049887	GATC	92	51.515	Pan_troglodytes
ENSELUG00000012608	gatc	74	59.406	ENSPANG00000033975	GATC	91	47.552	Papio_anubis
ENSELUG00000012608	gatc	75	68.932	ENSPKIG00000024856	gatc	63	63.492	Paramormyrops_kingsleyae
ENSELUG00000012608	gatc	74	61.765	ENSPSIG00000011112	-	87	61.765	Pelodiscus_sinensis
ENSELUG00000012608	gatc	75	79.612	ENSPMGG00000018829	gatc	89	65.278	Periophthalmus_magnuspinnatus
ENSELUG00000012608	gatc	85	57.265	ENSPEMG00000000665	Gatc	71	57.265	Peromyscus_maniculatus_bairdii
ENSELUG00000012608	gatc	69	62.105	ENSPCIG00000025999	-	62	62.105	Phascolarctos_cinereus
ENSELUG00000012608	gatc	75	78.641	ENSPFOG00000011603	gatc	76	66.438	Poecilia_formosa
ENSELUG00000012608	gatc	75	77.670	ENSPLAG00000002471	gatc	76	66.438	Poecilia_latipinna
ENSELUG00000012608	gatc	75	77.670	ENSPMEG00000020958	gatc	76	65.753	Poecilia_mexicana
ENSELUG00000012608	gatc	80	73.636	ENSPREG00000022256	gatc	74	72.973	Poecilia_reticulata
ENSELUG00000012608	gatc	74	60.396	ENSPPYG00000005030	GATC	91	48.252	Pongo_abelii
ENSELUG00000012608	gatc	67	63.043	ENSPCAG00000013864	-	68	63.043	Procavia_capensis
ENSELUG00000012608	gatc	67	60.870	ENSPCOG00000009493	-	89	47.761	Propithecus_coquereli
ENSELUG00000012608	gatc	66	57.143	ENSPCOG00000015558	-	88	45.865	Propithecus_coquereli
ENSELUG00000012608	gatc	71	61.856	ENSPVAG00000002228	-	72	61.856	Pteropus_vampyrus
ENSELUG00000012608	gatc	75	81.553	ENSPNYG00000016015	gatc	95	57.368	Pundamilia_nyererei
ENSELUG00000012608	gatc	75	78.641	ENSPNAG00000001239	gatc	54	72.800	Pygocentrus_nattereri
ENSELUG00000012608	gatc	69	65.263	ENSRNOG00000001161	Gatc	61	65.263	Rattus_norvegicus
ENSELUG00000012608	gatc	68	62.366	ENSRNOG00000045621	Gatc	61	62.366	Rattus_norvegicus
ENSELUG00000012608	gatc	74	59.406	ENSRBIG00000033363	GATC	74	59.406	Rhinopithecus_bieti
ENSELUG00000012608	gatc	74	59.406	ENSRROG00000042802	GATC	74	59.406	Rhinopithecus_roxellana
ENSELUG00000012608	gatc	74	59.406	ENSSBOG00000033750	-	91	48.951	Saimiri_boliviensis_boliviensis
ENSELUG00000012608	gatc	72	63.636	ENSSHAG00000005745	-	93	63.636	Sarcophilus_harrisii
ENSELUG00000012608	gatc	82	71.429	ENSSFOG00015002508	gatc	77	65.600	Scleropages_formosus
ENSELUG00000012608	gatc	75	81.553	ENSSMAG00000014280	gatc	71	73.485	Scophthalmus_maximus
ENSELUG00000012608	gatc	75	81.553	ENSSDUG00000012206	gatc	69	70.290	Seriola_dumerili
ENSELUG00000012608	gatc	75	81.553	ENSSLDG00000025159	gatc	68	70.290	Seriola_lalandi_dorsalis
ENSELUG00000012608	gatc	91	53.968	ENSSPUG00000015693	-	90	53.968	Sphenodon_punctatus
ENSELUG00000012608	gatc	75	81.553	ENSSPAG00000011860	gatc	73	68.750	Stegastes_partitus
ENSELUG00000012608	gatc	80	58.182	ENSSSCG00000032747	-	74	58.182	Sus_scrofa
ENSELUG00000012608	gatc	73	63.000	ENSTGUG00000009561	-	93	63.000	Taeniopygia_guttata
ENSELUG00000012608	gatc	75	75.728	ENSTRUG00000021596	gatc	83	57.396	Takifugu_rubripes
ENSELUG00000012608	gatc	75	76.699	ENSTNIG00000015879	gatc	86	53.261	Tetraodon_nigroviridis
ENSELUG00000012608	gatc	74	61.386	ENSTTRG00000000144	GATC	74	61.386	Tursiops_truncatus
ENSELUG00000012608	gatc	74	60.396	ENSUAMG00000015523	-	87	52.459	Ursus_americanus
ENSELUG00000012608	gatc	72	61.616	ENSVVUG00000021055	-	73	61.616	Vulpes_vulpes
ENSELUG00000012608	gatc	72	79.798	ENSXCOG00000017087	gatc	72	79.798	Xiphophorus_couchianus
ENSELUG00000012608	gatc	75	77.670	ENSXMAG00000018267	gatc	68	69.231	Xiphophorus_maculatus